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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 235 |
| AclWI | GGATC | 2 cut(s) | 322, 331 |
| AcuI | CTGAAG | 2 cut(s) | 438, 472 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 733 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AflIII | ACRYGT | 1 cut(s) | 623 |
| AgsI | TTSAA | 5 cut(s) | 217, 437, 476, 541, 557 |
| AhlI | ACTAGT | 1 cut(s) | 773 |
| AluBI | AGCT | 4 cut(s) | 58, 529, 640, 836 |
| AluI | AGCT | 4 cut(s) | 58, 529, 640, 836 |
| AlwI | GGATC | 2 cut(s) | 322, 331 |
| AoxI | GGCC | 1 cut(s) | 65 |
| ApeKI | GCWGC | 2 cut(s) | 585, 637 |
| AspLEI | GCGC | 1 cut(s) | 212 |
| AsuHPI | GGTGA | 1 cut(s) | 122 |
| BanI | GGYRCC | 1 cut(s) | 235 |
| BanII | GRGCYC | 1 cut(s) | 362 |
| BbvI | GCAGC | 2 cut(s) | 597, 649 |
| BccI | CCATC | 6 cut(s) | 47, 134, 170, 257, 503, 683 |
| BcuI | ACTAGT | 1 cut(s) | 773 |
| BfaI | CTAG | 3 cut(s) | 90, 363, 774 |
| BfmI | CTRYAG | 1 cut(s) | 807 |
| BfoI | RGCGCY | 1 cut(s) | 213 |
| BisI | GCNGC | 2 cut(s) | 586, 638 |
| BlsI | GCNGC | 2 cut(s) | 587, 639 |
| BmcAI | AGTACT | 1 cut(s) | 733 |
| BmiI | GGNNCC | 3 cut(s) | 237, 359, 867 |
| BmrI | ACTGGG | 1 cut(s) | 750 |
| BmsI | GCATC | 1 cut(s) | 25 |
| BmuI | ACTGGG | 1 cut(s) | 750 |
| BpuEI | CTTGAG | 2 cut(s) | 551, 625 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 861 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| Bse1I | ACTGG | 2 cut(s) | 430, 756 |
| Bse3DI | GCAATG | 1 cut(s) | 603 |
| BseDI | CCNNGG | 1 cut(s) | 861 |
| BseGI | GGATG | 4 cut(s) | 181, 763, 787, 877 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMI | GCAATG | 1 cut(s) | 603 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseNI | ACTGG | 2 cut(s) | 430, 756 |
| BseRI | GAGGAG | 4 cut(s) | 203, 507, 588, 807 |
| BseXI | GCAGC | 2 cut(s) | 597, 649 |
| BshFI | GGCC | 1 cut(s) | 67 |
| BshNI | GGYRCC | 1 cut(s) | 235 |
| BsiSI | CCGG | 1 cut(s) | 869 |
| BslFI | GGGAC | 1 cut(s) | 532 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmFI | GGGAC | 1 cut(s) | 532 |
| BsnI | GGCC | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 1 cut(s) | 362 |
| Bsp143I | GATC | 3 cut(s) | 314, 323, 403 |
| BspANI | GGCC | 1 cut(s) | 67 |
| BspCNI | CTCAG | 1 cut(s) | 173 |
| BspLI | GGNNCC | 3 cut(s) | 237, 359, 867 |
| BspPI | GGATC | 2 cut(s) | 322, 331 |
| BspT107I | GGYRCC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 1 cut(s) | 603 |
| BsrI | ACTGG | 2 cut(s) | 430, 756 |
| BssECI | CCNNGG | 1 cut(s) | 861 |
| BssMI | GATC | 3 cut(s) | 314, 323, 403 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 1 cut(s) | 861 |
| Bst6I | CTCTTC | 2 cut(s) | 377, 462 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 698 |
| BstC8I | GCNNGC | 6 cut(s) | 122, 590, 594, 699, 834, 838 |
| BstDEI | CTNAG | 2 cut(s) | 160, 224 |
| BstF5I | GGATG | 4 cut(s) | 181, 763, 787, 877 |
| BstH2I | RGCGCY | 1 cut(s) | 213 |
| BstHHI | GCGC | 1 cut(s) | 212 |
| BstKTI | GATC | 3 cut(s) | 317, 326, 406 |
| BstMBI | GATC | 3 cut(s) | 314, 323, 403 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 17, 64, 671, 698 |
| BstNSI | RCATGY | 3 cut(s) | 596, 627, 701 |
| BstSFI | CTRYAG | 1 cut(s) | 807 |
| BstV1I | GCAGC | 2 cut(s) | 597, 649 |
| BstX2I | RGATCY | 1 cut(s) | 314 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 463 |
| BstYI | RGATCY | 1 cut(s) | 314 |
| BsuRI | GGCC | 1 cut(s) | 67 |
| BtsCI | GGATG | 4 cut(s) | 181, 763, 787, 877 |
| Cac8I | GCNNGC | 6 cut(s) | 122, 590, 594, 699, 834, 838 |
| CfoI | GCGC | 1 cut(s) | 212 |
| CseI | GACGC | 1 cut(s) | 133 |
| Csp6I | GTAC | 1 cut(s) | 732 |
| CviAII | CATG | 8 cut(s) | 257, 274, 374, 407, 593, 624, 662, 698 |
| CviQI | GTAC | 1 cut(s) | 732 |
| DdeI | CTNAG | 2 cut(s) | 160, 224 |
| DpnI | GATC | 3 cut(s) | 316, 325, 405 |
| DpnII | GATC | 3 cut(s) | 314, 323, 403 |
| Eam1104I | CTCTTC | 2 cut(s) | 377, 462 |
| EarI | CTCTTC | 2 cut(s) | 377, 462 |
| Eco130I | CCWWGG | 1 cut(s) | 861 |
| Eco24I | GRGCYC | 1 cut(s) | 362 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 861 |
| EcoT38I | GRGCYC | 1 cut(s) | 362 |
| ErhI | CCWWGG | 1 cut(s) | 861 |
| FaeI | CATG | 8 cut(s) | 260, 277, 377, 410, 596, 627, 665, 701 |
| FaqI | GGGAC | 1 cut(s) | 532 |
| FatI | CATG | 8 cut(s) | 256, 273, 373, 406, 592, 623, 661, 697 |
| FauNDI | CATATG | 1 cut(s) | 668 |
| Fnu4HI | GCNGC | 2 cut(s) | 586, 638 |
| FokI | GGATG | 3 cut(s) | 188, 750, 794 |
| FriOI | GRGCYC | 1 cut(s) | 362 |
| Fsp4HI | GCNGC | 2 cut(s) | 586, 638 |
| FspBI | CTAG | 3 cut(s) | 90, 363, 774 |
| GlaI | GCGC | 1 cut(s) | 211 |
| GluI | GCNGC | 2 cut(s) | 586, 638 |
| HaeII | RGCGCY | 1 cut(s) | 213 |
| HaeIII | GGCC | 1 cut(s) | 67 |
| HapII | CCGG | 1 cut(s) | 869 |
| HgaI | GACGC | 1 cut(s) | 133 |
| HhaI | GCGC | 1 cut(s) | 212 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin1II | CATG | 8 cut(s) | 260, 277, 377, 410, 596, 627, 665, 701 |
| Hin6I | GCGC | 1 cut(s) | 210 |
| HinP1I | GCGC | 1 cut(s) | 210 |
| HinfI | GANTC | 4 cut(s) | 158, 413, 545, 743 |
| HpaII | CCGG | 1 cut(s) | 869 |
| HphI | GGTGA | 1 cut(s) | 122 |
| Hpy166II | GTNNAC | 1 cut(s) | 799 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 418, 491, 680 |
| Hpy188III | TCNNGA | 1 cut(s) | 549 |
| Hpy8I | GTNNAC | 1 cut(s) | 799 |
| HpyAV | CCTTC | 5 cut(s) | 107, 125, 223, 563, 682 |
| HpyCH4V | TGCA | 2 cut(s) | 596, 621 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 17, 64, 671, 698 |
| HpyF3I | CTNAG | 2 cut(s) | 160, 224 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Hsp92II | CATG | 8 cut(s) | 260, 277, 377, 410, 596, 627, 665, 701 |
| HspAI | GCGC | 1 cut(s) | 210 |
| Kzo9I | GATC | 3 cut(s) | 314, 323, 403 |
| LmnI | GCTCC | 3 cut(s) | 190, 357, 865 |
| LpnPI | CCDG | 7 cut(s) | 69, 106, 252, 443, 534, 769, 822 |
| Lsp1109I | GCAGC | 2 cut(s) | 597, 649 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 3 cut(s) | 90, 363, 774 |
| MaeIII | GTNAC | 3 cut(s) | 227, 269, 293 |
| MalI | GATC | 3 cut(s) | 316, 325, 405 |
| MboI | GATC | 3 cut(s) | 314, 323, 403 |
| MflI | RGATCY | 1 cut(s) | 314 |
| MhlI | GDGCHC | 1 cut(s) | 362 |
| MluCI | AATT | 2 cut(s) | 151, 552 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MseI | TTAA | 1 cut(s) | 99 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| MspI | CCGG | 1 cut(s) | 869 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 17, 64, 671, 698 |
| NdeI | CATATG | 1 cut(s) | 668 |
| NdeII | GATC | 3 cut(s) | 314, 323, 403 |
| NlaIII | CATG | 8 cut(s) | 260, 277, 377, 410, 596, 627, 665, 701 |
| NlaIV | GGNNCC | 3 cut(s) | 237, 359, 867 |
| NmuCI | GTSAC | 2 cut(s) | 227, 269 |
| NspI | RCATGY | 3 cut(s) | 596, 627, 701 |
| PaeI | GCATGC | 2 cut(s) | 596, 701 |
| PciI | ACATGT | 1 cut(s) | 623 |
| PfeI | GAWTC | 3 cut(s) | 413, 545, 743 |
| PkrI | GCNGC | 2 cut(s) | 587, 639 |
| PleI | GAGTC | 1 cut(s) | 152 |
| PpsI | GAGTC | 1 cut(s) | 152 |
| PscI | ACATGT | 1 cut(s) | 623 |
| PspN4I | GGNNCC | 3 cut(s) | 237, 359, 867 |
| PsuI | RGATCY | 1 cut(s) | 314 |
| RsaI | GTAC | 1 cut(s) | 733 |
| RsaNI | GTAC | 1 cut(s) | 732 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SaqAI | TTAA | 1 cut(s) | 99 |
| SatI | GCNGC | 2 cut(s) | 586, 638 |
| Sau3AI | GATC | 3 cut(s) | 314, 323, 403 |
| ScaI | AGTACT | 1 cut(s) | 733 |
| SchI | GAGTC | 1 cut(s) | 152 |
| SduI | GDGCHC | 1 cut(s) | 362 |
| SetI | ASST | 7 cut(s) | 60, 531, 635, 642, 655, 817, 838 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| SfcI | CTRYAG | 1 cut(s) | 807 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 2 cut(s) | 530, 604 |
| SmoI | CTYRAG | 2 cut(s) | 530, 604 |
| SpeI | ACTAGT | 1 cut(s) | 773 |
| SphI | GCATGC | 2 cut(s) | 596, 701 |
| Sse9I | AATT | 2 cut(s) | 151, 552 |
| SspMI | CTAG | 3 cut(s) | 90, 363, 774 |
| StyI | CCWWGG | 1 cut(s) | 861 |
| TaqI | TCGA | 1 cut(s) | 514 |
| TasI | AATT | 2 cut(s) | 151, 552 |
| TatI | WGTACW | 1 cut(s) | 731 |
| TfiI | GAWTC | 3 cut(s) | 413, 545, 743 |
| Tru1I | TTAA | 1 cut(s) | 99 |
| Tru9I | TTAA | 1 cut(s) | 99 |
| TseFI | GTSAC | 2 cut(s) | 227, 269 |
| TseI | GCWGC | 2 cut(s) | 585, 637 |
| Tsp45I | GTSAC | 2 cut(s) | 227, 269 |
| TspDTI | ATGAA | 5 cut(s) | 558, 579, 650, 752, 866 |
| XceI | RCATGY | 3 cut(s) | 596, 627, 701 |
| XspI | CTAG | 3 cut(s) | 90, 363, 774 |
| ZrmI | AGTACT | 1 cut(s) | 733 |