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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 202 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AclWI | GGATC | 2 cut(s) | 597, 610 |
| AcuI | CTGAAG | 2 cut(s) | 579, 600 |
| AfaI | GTAC | 1 cut(s) | 654 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AflII | CTTAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 3 cut(s) | 23, 360, 530 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| AluBI | AGCT | 3 cut(s) | 167, 628, 724 |
| AluI | AGCT | 3 cut(s) | 167, 628, 724 |
| Alw26I | GTCTC | 1 cut(s) | 394 |
| AlwI | GGATC | 2 cut(s) | 597, 610 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 167 |
| AoxI | GGCC | 3 cut(s) | 38, 188, 364 |
| ApaI | GGGCCC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 2 cut(s) | 167, 625 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 3 cut(s) | 38, 39, 188 |
| AsuHPI | GGTGA | 3 cut(s) | 167, 362, 515 |
| AxyI | CCTNAGG | 1 cut(s) | 315 |
| BaeGI | GKGCMC | 1 cut(s) | 42 |
| BamHI | GGATCC | 1 cut(s) | 602 |
| BanII | GRGCYC | 2 cut(s) | 42, 150 |
| BbvI | GCAGC | 2 cut(s) | 154, 637 |
| BccI | CCATC | 4 cut(s) | 200, 425, 494, 529 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 394 |
| BfaI | CTAG | 1 cut(s) | 345 |
| BfrI | CTTAAG | 1 cut(s) | 242 |
| BisI | GCNGC | 2 cut(s) | 168, 626 |
| BlsI | GCNGC | 2 cut(s) | 169, 627 |
| BmgT120I | GGNCC | 3 cut(s) | 38, 39, 188 |
| BmiI | GGNNCC | 2 cut(s) | 40, 604 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BpuEI | CTTGAG | 1 cut(s) | 204 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 2 cut(s) | 704, 766 |
| Bse21I | CCTNAGG | 1 cut(s) | 315 |
| BseGI | GGATG | 5 cut(s) | 136, 211, 235, 262, 391 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMII | CTCAG | 1 cut(s) | 306 |
| BseNI | ACTGG | 2 cut(s) | 704, 766 |
| BseRI | GAGGAG | 4 cut(s) | 77, 382, 724, 727 |
| BseSI | GKGCMC | 1 cut(s) | 42 |
| BseXI | GCAGC | 2 cut(s) | 154, 637 |
| BsgI | GTGCAG | 1 cut(s) | 500 |
| BshFI | GGCC | 3 cut(s) | 40, 190, 366 |
| BslFI | GGGAC | 2 cut(s) | 583, 767 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 1 cut(s) | 394 |
| BsmFI | GGGAC | 2 cut(s) | 583, 767 |
| BsnI | GGCC | 3 cut(s) | 40, 190, 366 |
| Bsp120I | GGGCCC | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 150 |
| Bsp143I | GATC | 2 cut(s) | 301, 602 |
| BspANI | GGCC | 3 cut(s) | 40, 190, 366 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspLI | GGNNCC | 2 cut(s) | 40, 604 |
| BspPI | GGATC | 2 cut(s) | 597, 610 |
| BspTI | CTTAAG | 1 cut(s) | 242 |
| BsrI | ACTGG | 2 cut(s) | 704, 766 |
| BssMI | GATC | 2 cut(s) | 301, 602 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 298 |
| Bst6I | CTCTTC | 1 cut(s) | 525 |
| BstAFI | CTTAAG | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 1 cut(s) | 726 |
| BstDEI | CTNAG | 3 cut(s) | 315, 412, 607 |
| BstF5I | GGATG | 5 cut(s) | 136, 211, 235, 262, 391 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 2 cut(s) | 304, 605 |
| BstMAI | GTCTC | 1 cut(s) | 394 |
| BstMBI | GATC | 2 cut(s) | 301, 602 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 319, 487, 734 |
| BstNSI | RCATGY | 1 cut(s) | 290 |
| BstSLI | GKGCMC | 1 cut(s) | 42 |
| BstV1I | GCAGC | 2 cut(s) | 154, 637 |
| BstX2I | RGATCY | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 602 |
| Bsu36I | CCTNAGG | 1 cut(s) | 315 |
| BsuRI | GGCC | 3 cut(s) | 40, 190, 366 |
| BtsCI | GGATG | 5 cut(s) | 136, 211, 235, 262, 391 |
| Cac8I | GCNNGC | 1 cut(s) | 726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 167 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 3 cut(s) | 38, 39, 188 |
| Csp6I | GTAC | 1 cut(s) | 653 |
| CviAII | CATG | 4 cut(s) | 263, 287, 599, 757 |
| CviQI | GTAC | 1 cut(s) | 653 |
| DdeI | CTNAG | 3 cut(s) | 315, 412, 607 |
| DpnI | GATC | 2 cut(s) | 303, 604 |
| DpnII | GATC | 2 cut(s) | 301, 602 |
| Eam1104I | CTCTTC | 1 cut(s) | 525 |
| EarI | CTCTTC | 1 cut(s) | 525 |
| Eco24I | GRGCYC | 2 cut(s) | 42, 150 |
| Eco57I | CTGAAG | 2 cut(s) | 579, 600 |
| Eco81I | CCTNAGG | 1 cut(s) | 315 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| EcoT22I | ATGCAT | 1 cut(s) | 600 |
| EcoT38I | GRGCYC | 2 cut(s) | 42, 150 |
| FaeI | CATG | 4 cut(s) | 266, 290, 602, 760 |
| FaiI | YATR | 9 cut(s) | 102, 264, 288, 437, 453, 554, 596, 600, 758 |
| FaqI | GGGAC | 2 cut(s) | 583, 767 |
| FatI | CATG | 4 cut(s) | 262, 286, 598, 756 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 2 cut(s) | 168, 626 |
| FokI | GGATG | 5 cut(s) | 143, 218, 242, 269, 398 |
| FriOI | GRGCYC | 2 cut(s) | 42, 150 |
| Fsp4HI | GCNGC | 2 cut(s) | 168, 626 |
| FspBI | CTAG | 1 cut(s) | 345 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 2 cut(s) | 168, 626 |
| HaeIII | GGCC | 3 cut(s) | 40, 190, 366 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1II | CATG | 4 cut(s) | 266, 290, 602, 760 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HinfI | GANTC | 3 cut(s) | 419, 443, 575 |
| HphI | GGTGA | 3 cut(s) | 167, 362, 515 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 697 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 397, 424, 448, 559, 580, 632 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 272, 345, 360, 377 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 697 |
| Hpy99I | CGWCG | 1 cut(s) | 677 |
| HpyAV | CCTTC | 4 cut(s) | 29, 65, 557, 575 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 298 |
| HpyCH4V | TGCA | 5 cut(s) | 170, 233, 322, 481, 598 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 319, 487, 734 |
| HpyF3I | CTNAG | 3 cut(s) | 315, 412, 607 |
| Hsp92II | CATG | 4 cut(s) | 266, 290, 602, 760 |
| HspAI | GCGC | 1 cut(s) | 290 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 2 cut(s) | 301, 602 |
| LmnI | GCTCC | 1 cut(s) | 633 |
| LpnPI | CCDG | 8 cut(s) | 204, 212, 285, 327, 671, 685, 714, 747 |
| Lsp1109I | GCAGC | 2 cut(s) | 154, 637 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 1 cut(s) | 345 |
| MaeIII | GTNAC | 2 cut(s) | 46, 503 |
| MalI | GATC | 2 cut(s) | 303, 604 |
| MboI | GATC | 2 cut(s) | 301, 602 |
| MboII | GAAGA | 7 cut(s) | 35, 80, 287, 479, 542, 572, 658 |
| MflI | RGATCY | 1 cut(s) | 602 |
| MhlI | GDGCHC | 2 cut(s) | 42, 150 |
| MluCI | AATT | 3 cut(s) | 455, 739, 765 |
| MlyI | GAGTC | 1 cut(s) | 413 |
| Mph1103I | ATGCAT | 1 cut(s) | 600 |
| MseI | TTAA | 3 cut(s) | 137, 243, 778 |
| MspCI | CTTAAG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 319, 487, 734 |
| NdeII | GATC | 2 cut(s) | 301, 602 |
| NlaIII | CATG | 4 cut(s) | 266, 290, 602, 760 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 604 |
| NmuCI | GTSAC | 1 cut(s) | 503 |
| NsiI | ATGCAT | 1 cut(s) | 600 |
| NspI | RCATGY | 1 cut(s) | 290 |
| PfeI | GAWTC | 2 cut(s) | 443, 575 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 202 |
| PkrI | GCNGC | 2 cut(s) | 169, 627 |
| PleI | GAGTC | 1 cut(s) | 413 |
| PpsI | GAGTC | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 604 |
| PspOMI | GGGCCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 3 cut(s) | 38, 39, 188 |
| PstNI | CAGNNNCTG | 1 cut(s) | 167 |
| PsuI | RGATCY | 1 cut(s) | 602 |
| RsaI | GTAC | 1 cut(s) | 654 |
| RsaNI | GTAC | 1 cut(s) | 653 |
| SaqAI | TTAA | 3 cut(s) | 137, 243, 778 |
| SatI | GCNGC | 2 cut(s) | 168, 626 |
| Sau3AI | GATC | 2 cut(s) | 301, 602 |
| Sau96I | GGNCC | 3 cut(s) | 38, 39, 188 |
| SchI | GAGTC | 1 cut(s) | 413 |
| SduI | GDGCHC | 2 cut(s) | 42, 150 |
| SetI | ASST | 7 cut(s) | 169, 321, 344, 352, 568, 630, 726 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SmlI | CTYRAG | 2 cut(s) | 219, 242 |
| SmoI | CTYRAG | 2 cut(s) | 219, 242 |
| Sse9I | AATT | 3 cut(s) | 455, 739, 765 |
| SspMI | CTAG | 1 cut(s) | 345 |
| TaaI | ACNGT | 2 cut(s) | 163, 298 |
| TaqI | TCGA | 2 cut(s) | 441, 543 |
| TasI | AATT | 3 cut(s) | 455, 739, 765 |
| TatI | WGTACW | 1 cut(s) | 652 |
| TfiI | GAWTC | 2 cut(s) | 443, 575 |
| Tru1I | TTAA | 3 cut(s) | 137, 243, 778 |
| Tru9I | TTAA | 3 cut(s) | 137, 243, 778 |
| TseFI | GTSAC | 1 cut(s) | 503 |
| TseI | GCWGC | 2 cut(s) | 167, 625 |
| Tsp45I | GTSAC | 1 cut(s) | 503 |
| TspDTI | ATGAA | 3 cut(s) | 273, 468, 637 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 202 |
| Vha464I | CTTAAG | 1 cut(s) | 242 |
| XbaI | TCTAGA | 1 cut(s) | 344 |
| XceI | RCATGY | 1 cut(s) | 290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 203 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XspI | CTAG | 1 cut(s) | 345 |
| Zsp2I | ATGCAT | 1 cut(s) | 600 |