No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PB1-like | PF26130 | 22 - 120 | 6.7e-16 | PB1-like domain |
| DBD_Tnp_Mut | PF03108 | 362 - 416 | 8.2e-10 | MuDR family transposase |
| MULE | PF10551 | 557 - 652 | 1.7e-19 | MULE transposase domain |
| Transposase_mut | PF00872 | 573 - 653 | 6.3e-06 | Transposase, Mutator family |
| SWIM | PF04434 | 787 - 816 | 2.6e-07 | SWIM zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2744 |
| Acc65I | GGTACC | 1 cut(s) | 216 |
| AccB1I | GGYRCC | 1 cut(s) | 216 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 12, 2654 |
| AciI | CCGC | 1 cut(s) | 2766 |
| AclWI | GGATC | 5 cut(s) | 50, 277, 1370, 1564, 1577 |
| AcoI | YGGCCR | 1 cut(s) | 2564 |
| AcsI | RAATTY | 5 cut(s) | 887, 998, 1070, 2362, 2622 |
| AcuI | CTGAAG | 4 cut(s) | 849, 942, 1122, 1496 |
| AdeI | CACNNNGTG | 3 cut(s) | 1183, 2359, 2657 |
| AfaI | GTAC | 6 cut(s) | 218, 356, 367, 1355, 1701, 2480 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 12, 172, 199, 1670, 2534, 2654, 2809 |
| AflII | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| AflIII | ACRYGT | 4 cut(s) | 351, 589, 856, 2384 |
| AhlI | ACTAGT | 3 cut(s) | 368, 431, 736 |
| AjnI | CCWGG | 3 cut(s) | 253, 2596, 2653 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1549, 1581 |
| AleI | CACNNNNGTG | 1 cut(s) | 1184 |
| Alw21I | GWGCWC | 4 cut(s) | 725, 767, 2069, 2475 |
| Alw26I | GTCTC | 7 cut(s) | 32, 331, 1787, 1933, 2287, 2449, 2596 |
| Alw44I | GTGCAC | 1 cut(s) | 2471 |
| AlwI | GGATC | 5 cut(s) | 50, 277, 1370, 1564, 1577 |
| AoxI | GGCC | 4 cut(s) | 2197, 2222, 2564, 2719 |
| ApaLI | GTGCAC | 1 cut(s) | 2471 |
| ApoI | RAATTY | 5 cut(s) | 887, 998, 1070, 2362, 2622 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 887, 919, 1792, 1824 |
| AseI | ATTAAT | 1 cut(s) | 882 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 383, 2033 |
| Asp718I | GGTACC | 1 cut(s) | 216 |
| AspA2I | CCTAGG | 2 cut(s) | 286, 332 |
| AspLEI | GCGC | 1 cut(s) | 2761 |
| AspS9I | GGNCC | 4 cut(s) | 868, 2198, 2222, 2733 |
| AsuC2I | CCSGG | 2 cut(s) | 167, 1554 |
| AsuHPI | GGTGA | 4 cut(s) | 74, 216, 938, 2371 |
| AvaII | GGWCC | 2 cut(s) | 868, 2733 |
| AvrII | CCTAGG | 2 cut(s) | 286, 332 |
| BaeGI | GKGCMC | 1 cut(s) | 2475 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 10, 43 |
| BamHI | GGATCC | 1 cut(s) | 1569 |
| BanI | GGYRCC | 1 cut(s) | 216 |
| BanII | GRGCYC | 2 cut(s) | 725, 2069 |
| BauI | CACGAG | 1 cut(s) | 2474 |
| BbsI | GAAGAC | 4 cut(s) | 423, 950, 1067, 1506 |
| Bbv12I | GWGCWC | 4 cut(s) | 725, 767, 2069, 2475 |
| BbvCI | CCTCAGC | 1 cut(s) | 1280 |
| BciT130I | CCWGG | 3 cut(s) | 255, 2598, 2655 |
| BciVI | GTATCC | 1 cut(s) | 2535 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcnI | CCSGG | 2 cut(s) | 167, 1554 |
| BcoDI | GTCTC | 7 cut(s) | 32, 331, 1787, 1933, 2287, 2449, 2596 |
| BcuI | ACTAGT | 3 cut(s) | 368, 431, 736 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| BfrI | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| BfuAI | ACCTGC | 1 cut(s) | 2744 |
| BfuI | GTATCC | 1 cut(s) | 2535 |
| BlnI | CCTAGG | 2 cut(s) | 286, 332 |
| BmcAI | AGTACT | 1 cut(s) | 2480 |
| Bme1390I | CCNGG | 5 cut(s) | 167, 255, 1554, 2598, 2655 |
| Bme18I | GGWCC | 2 cut(s) | 868, 2733 |
| BmgT120I | GGNCC | 4 cut(s) | 868, 2198, 2222, 2733 |
| BmiI | GGNNCC | 5 cut(s) | 39, 218, 869, 870, 1571 |
| BmrFI | CCNGG | 5 cut(s) | 167, 255, 1554, 2598, 2655 |
| BmrI | ACTGGG | 1 cut(s) | 208 |
| BmsI | GCATC | 5 cut(s) | 761, 1241, 1646, 1673, 1981 |
| BmuI | ACTGGG | 1 cut(s) | 208 |
| BpiI | GAAGAC | 4 cut(s) | 423, 950, 1067, 1506 |
| BpmI | CTGGAG | 1 cut(s) | 1538 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1280 |
| BpuEI | CTTGAG | 3 cut(s) | 709, 1907, 2272 |
| BpuMI | CCSGG | 2 cut(s) | 167, 1554 |
| Bsa29I | ATCGAT | 1 cut(s) | 2969 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1839, 1971 |
| BsaI | GGTCTC | 2 cut(s) | 2449, 2596 |
| BsaJI | CCNNGG | 7 cut(s) | 85, 254, 286, 332, 1217, 2134, 2597 |
| BsaWI | WCCGGW | 1 cut(s) | 1756 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 126, 156, 2905, 2935 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 12, 172, 199, 1670, 2534, 2654, 2809 |
| Bse1I | ACTGG | 4 cut(s) | 203, 1004, 1388, 2032 |
| Bse3DI | GCAATG | 1 cut(s) | 1341 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1839, 1971 |
| BseBI | CCWGG | 3 cut(s) | 255, 2598, 2655 |
| BseCI | ATCGAT | 1 cut(s) | 2969 |
| BseDI | CCNNGG | 7 cut(s) | 85, 254, 286, 332, 1217, 2134, 2597 |
| BseJI | GATNNNNATC | 2 cut(s) | 1839, 1971 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 12, 172, 199, 1670, 2534, 2654, 2809 |
| BseMI | GCAATG | 1 cut(s) | 1341 |
| BseMII | CTCAG | 6 cut(s) | 66, 750, 789, 933, 1271, 1569 |
| BseNI | ACTGG | 4 cut(s) | 203, 1004, 1388, 2032 |
| BseRI | GAGGAG | 6 cut(s) | 147, 2275, 2807, 2874, 2923, 2971 |
| BseSI | GKGCMC | 1 cut(s) | 2475 |
| BseYI | CCCAGC | 1 cut(s) | 2802 |
| BsgI | GTGCAG | 4 cut(s) | 1614, 2334, 2365, 2679 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2973 |
| BshFI | GGCC | 4 cut(s) | 2199, 2224, 2566, 2721 |
| BshNI | GGYRCC | 1 cut(s) | 216 |
| BshVI | ATCGAT | 1 cut(s) | 2969 |
| BsiEI | CGRYCG | 1 cut(s) | 2973 |
| BsiHKAI | GWGCWC | 4 cut(s) | 725, 767, 2069, 2475 |
| BsiSI | CCGG | 4 cut(s) | 166, 1553, 1757, 2535 |
| BslFI | GGGAC | 2 cut(s) | 881, 2564 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 12, 172, 199, 1670, 2534, 2654, 2809 |
| BsmAI | GTCTC | 7 cut(s) | 32, 331, 1787, 1933, 2287, 2449, 2596 |
| BsmBI | CGTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 2 cut(s) | 881, 2564 |
| BsmI | GAATGC | 2 cut(s) | 1410, 2803 |
| BsnI | GGCC | 4 cut(s) | 2199, 2224, 2566, 2721 |
| Bso31I | GGTCTC | 2 cut(s) | 2449, 2596 |
| Bsp1286I | GDGCHC | 4 cut(s) | 725, 767, 2069, 2475 |
| Bsp1407I | TGTACA | 1 cut(s) | 354 |
| Bsp143I | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| Bsp19I | CCATGG | 1 cut(s) | 85 |
| BspACI | CCGC | 1 cut(s) | 2766 |
| BspANI | GGCC | 4 cut(s) | 2199, 2224, 2566, 2721 |
| BspCNI | CTCAG | 6 cut(s) | 65, 751, 788, 934, 1272, 1570 |
| BspDI | ATCGAT | 1 cut(s) | 2969 |
| BspHI | TCATGA | 3 cut(s) | 481, 1368, 1863 |
| BspLI | GGNNCC | 5 cut(s) | 39, 218, 869, 870, 1571 |
| BspMAI | CTGCAG | 1 cut(s) | 715 |
| BspMI | ACCTGC | 1 cut(s) | 2744 |
| BspPI | GGATC | 5 cut(s) | 50, 277, 1370, 1564, 1577 |
| BspQI | GCTCTTC | 1 cut(s) | 2057 |
| BspT107I | GGYRCC | 1 cut(s) | 216 |
| BspTI | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| BspTNI | GGTCTC | 2 cut(s) | 2449, 2596 |
| BsrDI | GCAATG | 1 cut(s) | 1341 |
| BsrGI | TGTACA | 1 cut(s) | 354 |
| BsrI | ACTGG | 4 cut(s) | 203, 1004, 1388, 2032 |
| BssECI | CCNNGG | 7 cut(s) | 85, 254, 286, 332, 1217, 2134, 2597 |
| BssMI | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| BssSI | CACGAG | 1 cut(s) | 2474 |
| BssT1I | CCWWGG | 5 cut(s) | 85, 286, 332, 1217, 2134 |
| Bst2BI | CACGAG | 1 cut(s) | 2474 |
| Bst2UI | CCWGG | 3 cut(s) | 255, 2598, 2655 |
| Bst4CI | ACNGT | 4 cut(s) | 64, 73, 1183, 2729 |
| Bst6I | CTCTTC | 3 cut(s) | 258, 825, 2057 |
| BstAFI | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2432 |
| BstAUI | TGTACA | 1 cut(s) | 354 |
| BstC8I | GCNNGC | 7 cut(s) | 620, 1116, 1332, 1400, 1893, 2424, 2763 |
| BstDSI | CCRYGG | 1 cut(s) | 85 |
| BstHHI | GCGC | 1 cut(s) | 2761 |
| BstKTI | GATC | 7 cut(s) | 58, 272, 322, 427, 1378, 1572, 2973 |
| BstMAI | GTCTC | 7 cut(s) | 32, 331, 1787, 1933, 2287, 2449, 2596 |
| BstMBI | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| BstMCI | CGRYCG | 1 cut(s) | 2973 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1882, 2432, 2762, 2765, 2842 |
| BstNI | CCWGG | 3 cut(s) | 255, 2598, 2655 |
| BstNSI | RCATGY | 8 cut(s) | 355, 593, 860, 1118, 1334, 1402, 2388, 2426 |
| BstSCI | CCNGG | 5 cut(s) | 165, 253, 1552, 2596, 2653 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstSLI | GKGCMC | 1 cut(s) | 2475 |
| BstV2I | GAAGAC | 4 cut(s) | 423, 950, 1067, 1506 |
| BstX2I | RGATCY | 2 cut(s) | 55, 1569 |
| BstYI | RGATCY | 2 cut(s) | 55, 1569 |
| Bsu15I | ATCGAT | 1 cut(s) | 2969 |
| BsuI | GTATCC | 1 cut(s) | 2535 |
| BsuRI | GGCC | 4 cut(s) | 2199, 2224, 2566, 2721 |
| BsuTUI | ATCGAT | 1 cut(s) | 2969 |
| BtgI | CCRYGG | 1 cut(s) | 85 |
| BtsIMutI | CAGTG | 2 cut(s) | 1472, 1575 |
| BveI | ACCTGC | 1 cut(s) | 2744 |
| Cac8I | GCNNGC | 7 cut(s) | 620, 1116, 1332, 1400, 1893, 2424, 2763 |
| CciI | TCATGA | 3 cut(s) | 481, 1368, 1863 |
| CfoI | GCGC | 1 cut(s) | 2761 |
| Cfr13I | GGNCC | 4 cut(s) | 868, 2198, 2222, 2733 |
| ClaI | ATCGAT | 1 cut(s) | 2969 |
| CseI | GACGC | 1 cut(s) | 1285 |
| CsiI | ACCWGGT | 1 cut(s) | 2653 |
| Csp6I | GTAC | 6 cut(s) | 217, 355, 366, 1354, 1700, 2479 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2322, 2357 |
| CviQI | GTAC | 6 cut(s) | 217, 355, 366, 1354, 1700, 2479 |
| DpnI | GATC | 7 cut(s) | 57, 271, 321, 426, 1377, 1571, 2972 |
| DpnII | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| DraI | TTTAAA | 2 cut(s) | 679, 1606 |
| DraIII | CACNNNGTG | 3 cut(s) | 1183, 2359, 2657 |
| EaeI | YGGCCR | 1 cut(s) | 2564 |
| Eam1104I | CTCTTC | 3 cut(s) | 258, 825, 2057 |
| EarI | CTCTTC | 3 cut(s) | 258, 825, 2057 |
| Ecl136II | GAGCTC | 2 cut(s) | 723, 2067 |
| Eco130I | CCWWGG | 5 cut(s) | 85, 286, 332, 1217, 2134 |
| Eco24I | GRGCYC | 2 cut(s) | 725, 2069 |
| Eco31I | GGTCTC | 2 cut(s) | 2449, 2596 |
| Eco32I | GATATC | 1 cut(s) | 1837 |
| Eco47I | GGWCC | 2 cut(s) | 868, 2733 |
| Eco53kI | GAGCTC | 2 cut(s) | 723, 2067 |
| Eco57I | CTGAAG | 4 cut(s) | 849, 942, 1122, 1496 |
| EcoICRI | GAGCTC | 2 cut(s) | 723, 2067 |
| EcoO109I | RGGNCCY | 3 cut(s) | 868, 2198, 2733 |
| EcoRI | GAATTC | 1 cut(s) | 2622 |
| EcoRII | CCWGG | 3 cut(s) | 253, 2596, 2653 |
| EcoRV | GATATC | 1 cut(s) | 1837 |
| EcoT14I | CCWWGG | 5 cut(s) | 85, 286, 332, 1217, 2134 |
| EcoT22I | ATGCAT | 4 cut(s) | 754, 1199, 1234, 1332 |
| EcoT38I | GRGCYC | 2 cut(s) | 725, 2069 |
| ErhI | CCWWGG | 5 cut(s) | 85, 286, 332, 1217, 2134 |
| Esp3I | CGTCTC | 1 cut(s) | 32 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 384, 416 |
| FaqI | GGGAC | 2 cut(s) | 881, 2564 |
| FauNDI | CATATG | 2 cut(s) | 1326, 2509 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FriOI | GRGCYC | 2 cut(s) | 725, 2069 |
| GlaI | GCGC | 1 cut(s) | 2760 |
| GsaI | CCCAGC | 1 cut(s) | 2806 |
| GsuI | CTGGAG | 1 cut(s) | 1538 |
| HaeIII | GGCC | 4 cut(s) | 2199, 2224, 2566, 2721 |
| HapII | CCGG | 4 cut(s) | 166, 1553, 1757, 2535 |
| HgaI | GACGC | 1 cut(s) | 1285 |
| HhaI | GCGC | 1 cut(s) | 2761 |
| Hin6I | GCGC | 1 cut(s) | 2759 |
| HinP1I | GCGC | 1 cut(s) | 2759 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HindIII | AAGCTT | 2 cut(s) | 341, 570 |
| HinfI | GANTC | 9 cut(s) | 184, 250, 806, 1255, 1549, 1749, 2072, 2308, 2873 |
| HpaII | CCGG | 4 cut(s) | 166, 1553, 1757, 2535 |
| HphI | GGTGA | 4 cut(s) | 74, 216, 938, 2371 |
| Hpy166II | GTNNAC | 6 cut(s) | 82, 163, 366, 1438, 2473, 2827 |
| Hpy8I | GTNNAC | 6 cut(s) | 82, 163, 366, 1438, 2473, 2827 |
| HpyCH4III | ACNGT | 4 cut(s) | 64, 73, 1183, 2729 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1882, 2432, 2762, 2765, 2842 |
| HspAI | GCGC | 1 cut(s) | 2759 |
| KflI | GGGWCCC | 1 cut(s) | 868 |
| KpnI | GGTACC | 1 cut(s) | 220 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| LguI | GCTCTTC | 1 cut(s) | 2057 |
| LmnI | GCTCC | 3 cut(s) | 37, 1339, 2936 |
| LweI | GCATC | 5 cut(s) | 761, 1241, 1646, 1673, 1981 |
| MabI | ACCWGGT | 1 cut(s) | 2653 |
| MaeIII | GTNAC | 3 cut(s) | 1451, 1594, 1868 |
| MalI | GATC | 7 cut(s) | 57, 271, 321, 426, 1377, 1571, 2972 |
| MboI | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| MfeI | CAATTG | 3 cut(s) | 2240, 2529, 2568 |
| MflI | RGATCY | 2 cut(s) | 55, 1569 |
| MhlI | GDGCHC | 4 cut(s) | 725, 767, 2069, 2475 |
| MlyI | GAGTC | 2 cut(s) | 178, 1264 |
| MmeI | TCCRAC | 5 cut(s) | 83, 930, 1187, 1962, 2075 |
| Mph1103I | ATGCAT | 4 cut(s) | 754, 1199, 1234, 1332 |
| MroXI | GAANNNNTTC | 2 cut(s) | 383, 2033 |
| MslI | CAYNNNNRTG | 5 cut(s) | 861, 1184, 1296, 1329, 1862 |
| MspCI | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| MspI | CCGG | 4 cut(s) | 166, 1553, 1757, 2535 |
| MspR9I | CCNGG | 5 cut(s) | 167, 255, 1554, 2598, 2655 |
| MunI | CAATTG | 3 cut(s) | 2240, 2529, 2568 |
| Mva1269I | GAATGC | 2 cut(s) | 1410, 2803 |
| MvaI | CCWGG | 3 cut(s) | 255, 2598, 2655 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1882, 2432, 2762, 2765, 2842 |
| NciI | CCSGG | 2 cut(s) | 167, 1554 |
| NcoI | CCATGG | 1 cut(s) | 85 |
| NdeI | CATATG | 2 cut(s) | 1326, 2509 |
| NdeII | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| NlaIV | GGNNCC | 5 cut(s) | 39, 218, 869, 870, 1571 |
| NmuCI | GTSAC | 2 cut(s) | 1594, 1868 |
| NsiI | ATGCAT | 4 cut(s) | 754, 1199, 1234, 1332 |
| NspI | RCATGY | 8 cut(s) | 355, 593, 860, 1118, 1334, 1402, 2388, 2426 |
| OliI | CACNNNNGTG | 1 cut(s) | 1184 |
| PaeI | GCATGC | 4 cut(s) | 1118, 1334, 1402, 2426 |
| PagI | TCATGA | 3 cut(s) | 481, 1368, 1863 |
| PciI | ACATGT | 4 cut(s) | 351, 589, 856, 2384 |
| PciSI | GCTCTTC | 1 cut(s) | 2057 |
| PctI | GAATGC | 2 cut(s) | 1410, 2803 |
| PdmI | GAANNNNTTC | 2 cut(s) | 383, 2033 |
| PfeI | GAWTC | 7 cut(s) | 250, 806, 1549, 1749, 2072, 2308, 2873 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 12, 2654 |
| PfoI | TCCNGGA | 1 cut(s) | 1552 |
| Ple19I | CGATCG | 1 cut(s) | 2973 |
| PleI | GAGTC | 2 cut(s) | 178, 1263 |
| PpsI | GAGTC | 2 cut(s) | 178, 1263 |
| PpuMI | RGGWCCY | 2 cut(s) | 868, 2733 |
| PscI | ACATGT | 4 cut(s) | 351, 589, 856, 2384 |
| PshBI | ATTAAT | 1 cut(s) | 882 |
| Psp124BI | GAGCTC | 2 cut(s) | 725, 2069 |
| Psp5II | RGGWCCY | 2 cut(s) | 868, 2733 |
| Psp6I | CCWGG | 3 cut(s) | 253, 2596, 2653 |
| PspFI | CCCAGC | 1 cut(s) | 2802 |
| PspGI | CCWGG | 3 cut(s) | 253, 2596, 2653 |
| PspN4I | GGNNCC | 5 cut(s) | 39, 218, 869, 870, 1571 |
| PspPI | GGNCC | 4 cut(s) | 868, 2198, 2222, 2733 |
| PspPPI | RGGWCCY | 2 cut(s) | 868, 2733 |
| PstI | CTGCAG | 1 cut(s) | 715 |
| PsuI | RGATCY | 2 cut(s) | 55, 1569 |
| PvuI | CGATCG | 1 cut(s) | 2973 |
| RsaI | GTAC | 6 cut(s) | 218, 356, 367, 1355, 1701, 2480 |
| RsaNI | GTAC | 6 cut(s) | 217, 355, 366, 1354, 1700, 2479 |
| RseI | CAYNNNNRTG | 5 cut(s) | 861, 1184, 1296, 1329, 1862 |
| SacI | GAGCTC | 2 cut(s) | 725, 2069 |
| SapI | GCTCTTC | 1 cut(s) | 2057 |
| Sau3AI | GATC | 7 cut(s) | 55, 269, 319, 424, 1375, 1569, 2970 |
| Sau96I | GGNCC | 4 cut(s) | 868, 2198, 2222, 2733 |
| ScaI | AGTACT | 1 cut(s) | 2480 |
| SchI | GAGTC | 2 cut(s) | 178, 1264 |
| ScrFI | CCNGG | 5 cut(s) | 167, 255, 1554, 2598, 2655 |
| SduI | GDGCHC | 4 cut(s) | 725, 767, 2069, 2475 |
| SexAI | ACCWGGT | 1 cut(s) | 2653 |
| SfaNI | GCATC | 5 cut(s) | 761, 1241, 1646, 1673, 1981 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| SinI | GGWCC | 2 cut(s) | 868, 2733 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 861, 1184, 1296, 1329, 1862 |
| SmlI | CTYRAG | 6 cut(s) | 724, 1109, 1820, 1886, 2287, 2740 |
| SmoI | CTYRAG | 6 cut(s) | 724, 1109, 1820, 1886, 2287, 2740 |
| SpeI | ACTAGT | 3 cut(s) | 368, 431, 736 |
| SphI | GCATGC | 4 cut(s) | 1118, 1334, 1402, 2426 |
| SsiI | CCGC | 1 cut(s) | 2766 |
| SstI | GAGCTC | 2 cut(s) | 725, 2069 |
| StyD4I | CCNGG | 5 cut(s) | 165, 253, 1552, 2596, 2653 |
| StyI | CCWWGG | 5 cut(s) | 85, 286, 332, 1217, 2134 |
| TaaI | ACNGT | 4 cut(s) | 64, 73, 1183, 2729 |
| TaqI | TCGA | 3 cut(s) | 559, 2444, 2969 |
| TaqII | GACCGA | 1 cut(s) | 2620 |
| TatI | WGTACW | 3 cut(s) | 354, 365, 2478 |
| TauI | GCSGC | 1 cut(s) | 2768 |
| TfiI | GAWTC | 7 cut(s) | 250, 806, 1549, 1749, 2072, 2308, 2873 |
| TscAI | CASTG | 2 cut(s) | 1479, 1582 |
| TseFI | GTSAC | 2 cut(s) | 1594, 1868 |
| Tsp45I | GTSAC | 2 cut(s) | 1594, 1868 |
| TspRI | CASTG | 2 cut(s) | 1479, 1582 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 12, 2654 |
| Vha464I | CTTAAG | 3 cut(s) | 1109, 1820, 2740 |
| VneI | GTGCAC | 1 cut(s) | 2471 |
| VpaK11BI | GGWCC | 2 cut(s) | 868, 2733 |
| VspI | ATTAAT | 1 cut(s) | 882 |
| XapI | RAATTY | 5 cut(s) | 887, 998, 1070, 2362, 2622 |
| XbaI | TCTAGA | 1 cut(s) | 1388 |
| XceI | RCATGY | 8 cut(s) | 355, 593, 860, 1118, 1334, 1402, 2388, 2426 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 237 |
| XmaJI | CCTAGG | 2 cut(s) | 286, 332 |
| XmnI | GAANNNNTTC | 2 cut(s) | 383, 2033 |
| ZrmI | AGTACT | 1 cut(s) | 2480 |
| Zsp2I | ATGCAT | 4 cut(s) | 754, 1199, 1234, 1332 |