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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 215 |
| AccB1I | GGYRCC | 1 cut(s) | 82 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 594 |
| AccBSI | CCGCTC | 1 cut(s) | 117 |
| AccII | CGCG | 1 cut(s) | 69 |
| AccIII | TCCGGA | 1 cut(s) | 991 |
| AciI | CCGC | 5 cut(s) | 44, 115, 280, 314, 863 |
| AcoI | YGGCCR | 1 cut(s) | 1004 |
| AcsI | RAATTY | 4 cut(s) | 137, 503, 839, 977 |
| AcuI | CTGAAG | 1 cut(s) | 915 |
| AfaI | GTAC | 6 cut(s) | 101, 230, 372, 575, 784, 891 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 594 |
| AgeI | ACCGGT | 1 cut(s) | 848 |
| AgsI | TTSAA | 6 cut(s) | 424, 584, 692, 839, 944, 1073 |
| AhlI | ACTAGT | 1 cut(s) | 245 |
| AjnI | CCWGG | 2 cut(s) | 78, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 858, 890 |
| Alw21I | GWGCWC | 1 cut(s) | 951 |
| Aor13HI | TCCGGA | 1 cut(s) | 991 |
| AoxI | GGCC | 2 cut(s) | 930, 1004 |
| ApeKI | GCWGC | 6 cut(s) | 143, 186, 199, 275, 397, 919 |
| ApoI | RAATTY | 4 cut(s) | 137, 503, 839, 977 |
| AsiGI | ACCGGT | 1 cut(s) | 848 |
| AspA2I | CCTAGG | 2 cut(s) | 407, 565 |
| AspLEI | GCGC | 2 cut(s) | 71, 556 |
| AspS9I | GGNCC | 3 cut(s) | 562, 706, 994 |
| AsuHPI | GGTGA | 2 cut(s) | 341, 395 |
| AvaII | GGWCC | 3 cut(s) | 562, 706, 994 |
| AvrII | CCTAGG | 2 cut(s) | 407, 565 |
| BalI | TGGCCA | 1 cut(s) | 1006 |
| BanI | GGYRCC | 1 cut(s) | 82 |
| BanII | GRGCYC | 1 cut(s) | 951 |
| Bbv12I | GWGCWC | 1 cut(s) | 951 |
| BbvI | GCAGC | 6 cut(s) | 155, 186, 198, 262, 384, 906 |
| BccI | CCATC | 2 cut(s) | 128, 931 |
| BceAI | ACGGC | 1 cut(s) | 199 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 72, 106 |
| BciT130I | CCWGG | 2 cut(s) | 80, 492 |
| BclI | TGATCA | 2 cut(s) | 193, 337 |
| BcuI | ACTAGT | 1 cut(s) | 245 |
| BfaI | CTAG | 4 cut(s) | 54, 246, 408, 566 |
| BfmI | CTRYAG | 1 cut(s) | 657 |
| BisI | GCNGC | 8 cut(s) | 115, 144, 187, 200, 276, 315, 398, 920 |
| BlnI | CCTAGG | 2 cut(s) | 407, 565 |
| BlsI | GCNGC | 8 cut(s) | 116, 145, 188, 201, 277, 316, 399, 921 |
| Bme1390I | CCNGG | 2 cut(s) | 80, 492 |
| Bme18I | GGWCC | 3 cut(s) | 562, 706, 994 |
| BmgT120I | GGNCC | 3 cut(s) | 562, 706, 994 |
| BmiI | GGNNCC | 5 cut(s) | 84, 496, 563, 699, 708 |
| BmrFI | CCNGG | 2 cut(s) | 80, 492 |
| BmrI | ACTGGG | 1 cut(s) | 271 |
| BmsI | GCATC | 6 cut(s) | 211, 409, 532, 692, 978, 1030 |
| BmuI | ACTGGG | 1 cut(s) | 271 |
| Bpu10I | CCTNAGC | 1 cut(s) | 600 |
| BpuEI | CTTGAG | 2 cut(s) | 909, 937 |
| BsaJI | CCNNGG | 5 cut(s) | 407, 498, 565, 753, 963 |
| BsaWI | WCCGGW | 2 cut(s) | 848, 991 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 594 |
| Bse118I | RCCGGY | 1 cut(s) | 848 |
| Bse1I | ACTGG | 2 cut(s) | 266, 708 |
| Bse3DI | GCAATG | 3 cut(s) | 105, 790, 802 |
| BseAI | TCCGGA | 1 cut(s) | 991 |
| BseBI | CCWGG | 2 cut(s) | 80, 492 |
| BseDI | CCNNGG | 5 cut(s) | 407, 498, 565, 753, 963 |
| BseGI | GGATG | 3 cut(s) | 44, 749, 1045 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BseMI | GCAATG | 3 cut(s) | 105, 790, 802 |
| BseMII | CTCAG | 3 cut(s) | 179, 810, 929 |
| BseNI | ACTGG | 2 cut(s) | 266, 708 |
| BseXI | GCAGC | 6 cut(s) | 155, 186, 198, 262, 384, 906 |
| Bsh1236I | CGCG | 1 cut(s) | 69 |
| BshFI | GGCC | 2 cut(s) | 932, 1006 |
| BshNI | GGYRCC | 1 cut(s) | 82 |
| BshTI | ACCGGT | 1 cut(s) | 848 |
| BsiHKAI | GWGCWC | 1 cut(s) | 951 |
| BsiSI | CCGG | 2 cut(s) | 849, 992 |
| BslFI | GGGAC | 1 cut(s) | 575 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BsmFI | GGGAC | 1 cut(s) | 575 |
| BsnI | GGCC | 2 cut(s) | 932, 1006 |
| Bsp1286I | GDGCHC | 1 cut(s) | 951 |
| Bsp13I | TCCGGA | 1 cut(s) | 991 |
| Bsp1407I | TGTACA | 2 cut(s) | 228, 370 |
| Bsp143I | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| Bsp19I | CCATGG | 1 cut(s) | 753 |
| BspACI | CCGC | 5 cut(s) | 44, 115, 280, 314, 863 |
| BspANI | GGCC | 2 cut(s) | 932, 1006 |
| BspCNI | CTCAG | 3 cut(s) | 178, 811, 928 |
| BspEI | TCCGGA | 1 cut(s) | 991 |
| BspFNI | CGCG | 1 cut(s) | 69 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspLI | GGNNCC | 5 cut(s) | 84, 496, 563, 699, 708 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspT107I | GGYRCC | 1 cut(s) | 82 |
| BsrBI | CCGCTC | 1 cut(s) | 117 |
| BsrDI | GCAATG | 3 cut(s) | 105, 790, 802 |
| BsrFI | RCCGGY | 1 cut(s) | 848 |
| BsrGI | TGTACA | 2 cut(s) | 228, 370 |
| BsrI | ACTGG | 2 cut(s) | 266, 708 |
| BssAI | RCCGGY | 1 cut(s) | 848 |
| BssECI | CCNNGG | 5 cut(s) | 407, 498, 565, 753, 963 |
| BssMI | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| BssT1I | CCWWGG | 4 cut(s) | 407, 498, 565, 753 |
| Bst2UI | CCWGG | 2 cut(s) | 80, 492 |
| Bst4CI | ACNGT | 6 cut(s) | 159, 368, 375, 715, 731, 787 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 860 |
| BstAUI | TGTACA | 2 cut(s) | 228, 370 |
| BstC8I | GCNNGC | 4 cut(s) | 67, 112, 280, 355 |
| BstDEI | CTNAG | 4 cut(s) | 165, 600, 819, 915 |
| BstDSI | CCRYGG | 1 cut(s) | 753 |
| BstF5I | GGATG | 3 cut(s) | 44, 749, 1045 |
| BstFNI | CGCG | 1 cut(s) | 69 |
| BstHHI | GCGC | 2 cut(s) | 71, 556 |
| BstKTI | GATC | 4 cut(s) | 196, 340, 435, 1063 |
| BstMBI | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 50, 272, 551, 576, 770, 860 |
| BstNI | CCWGG | 2 cut(s) | 80, 492 |
| BstNSI | RCATGY | 1 cut(s) | 235 |
| BstSCI | CCNGG | 2 cut(s) | 78, 490 |
| BstSFI | CTRYAG | 1 cut(s) | 657 |
| BstUI | CGCG | 1 cut(s) | 69 |
| BstV1I | GCAGC | 6 cut(s) | 155, 186, 198, 262, 384, 906 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 79, 760 |
| BsuRI | GGCC | 2 cut(s) | 932, 1006 |
| BtgI | CCRYGG | 1 cut(s) | 753 |
| BtsCI | GGATG | 3 cut(s) | 44, 749, 1045 |
| BtsI | GCAGTG | 3 cut(s) | 627, 678, 1050 |
| BtsIMutI | CAGTG | 7 cut(s) | 259, 627, 678, 701, 727, 792, 1050 |
| Cac8I | GCNNGC | 4 cut(s) | 67, 112, 280, 355 |
| CciI | TCATGA | 1 cut(s) | 378 |
| CfoI | GCGC | 2 cut(s) | 71, 556 |
| Cfr10I | RCCGGY | 1 cut(s) | 848 |
| Cfr13I | GGNCC | 3 cut(s) | 562, 706, 994 |
| Csp6I | GTAC | 6 cut(s) | 100, 229, 371, 574, 783, 890 |
| CspAI | ACCGGT | 1 cut(s) | 848 |
| CviAII | CATG | 4 cut(s) | 213, 232, 379, 754 |
| CviQI | GTAC | 6 cut(s) | 100, 229, 371, 574, 783, 890 |
| DdeI | CTNAG | 4 cut(s) | 165, 600, 819, 915 |
| DpnI | GATC | 4 cut(s) | 195, 339, 434, 1062 |
| DpnII | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 215 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 215 |
| EaeI | YGGCCR | 1 cut(s) | 1004 |
| Ecl136II | GAGCTC | 1 cut(s) | 949 |
| Eco130I | CCWWGG | 4 cut(s) | 407, 498, 565, 753 |
| Eco147I | AGGCCT | 1 cut(s) | 932 |
| Eco24I | GRGCYC | 1 cut(s) | 951 |
| Eco47I | GGWCC | 3 cut(s) | 562, 706, 994 |
| Eco53kI | GAGCTC | 1 cut(s) | 949 |
| Eco57I | CTGAAG | 1 cut(s) | 915 |
| EcoICRI | GAGCTC | 1 cut(s) | 949 |
| EcoO109I | RGGNCCY | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 839 |
| EcoRII | CCWGG | 2 cut(s) | 78, 490 |
| EcoT14I | CCWWGG | 4 cut(s) | 407, 498, 565, 753 |
| EcoT38I | GRGCYC | 1 cut(s) | 951 |
| ErhI | CCWWGG | 4 cut(s) | 407, 498, 565, 753 |
| FaeI | CATG | 4 cut(s) | 216, 235, 382, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| FaqI | GGGAC | 1 cut(s) | 575 |
| FatI | CATG | 4 cut(s) | 212, 231, 378, 753 |
| FauI | CCCGC | 1 cut(s) | 287 |
| FauNDI | CATATG | 1 cut(s) | 814 |
| FbaI | TGATCA | 2 cut(s) | 193, 337 |
| Fnu4HI | GCNGC | 8 cut(s) | 115, 144, 187, 200, 276, 315, 398, 920 |
| FokI | GGATG | 3 cut(s) | 51, 736, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 951 |
| Fsp4HI | GCNGC | 8 cut(s) | 115, 144, 187, 200, 276, 315, 398, 920 |
| FspBI | CTAG | 4 cut(s) | 54, 246, 408, 566 |
| GlaI | GCGC | 2 cut(s) | 70, 555 |
| GluI | GCNGC | 8 cut(s) | 115, 144, 187, 200, 276, 315, 398, 920 |
| HaeIII | GGCC | 2 cut(s) | 932, 1006 |
| HapII | CCGG | 2 cut(s) | 849, 992 |
| HhaI | GCGC | 2 cut(s) | 71, 556 |
| Hin1II | CATG | 4 cut(s) | 216, 235, 382, 757 |
| Hin6I | GCGC | 2 cut(s) | 69, 554 |
| HinP1I | GCGC | 2 cut(s) | 69, 554 |
| HindIII | AAGCTT | 1 cut(s) | 351 |
| HinfI | GANTC | 1 cut(s) | 440 |
| HpaII | CCGG | 2 cut(s) | 849, 992 |
| HphI | GGTGA | 2 cut(s) | 341, 395 |
| Hpy166II | GTNNAC | 3 cut(s) | 162, 229, 371 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 168, 342, 439 |
| Hpy188III | TCNNGA | 7 cut(s) | 124, 320, 379, 926, 944, 954, 992 |
| Hpy8I | GTNNAC | 3 cut(s) | 162, 229, 371 |
| HpyAV | CCTTC | 1 cut(s) | 418 |
| HpyCH4III | ACNGT | 6 cut(s) | 159, 368, 375, 715, 731, 787 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 9 cut(s) | 400, 579, 659, 683, 719, 790, 795, 854, 1043 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 50, 272, 551, 576, 770, 860 |
| HpyF3I | CTNAG | 4 cut(s) | 165, 600, 819, 915 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| Hsp92II | CATG | 4 cut(s) | 216, 235, 382, 757 |
| HspAI | GCGC | 2 cut(s) | 69, 554 |
| Kpn2I | TCCGGA | 1 cut(s) | 991 |
| Ksp22I | TGATCA | 2 cut(s) | 193, 337 |
| Kzo9I | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| LmnI | GCTCC | 1 cut(s) | 122 |
| Lsp1109I | GCAGC | 6 cut(s) | 155, 186, 198, 262, 384, 906 |
| LweI | GCATC | 6 cut(s) | 211, 409, 532, 692, 978, 1030 |
| MaeI | CTAG | 4 cut(s) | 54, 246, 408, 566 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MaeIII | GTNAC | 2 cut(s) | 625, 643 |
| MalI | GATC | 4 cut(s) | 195, 339, 434, 1062 |
| MbiI | CCGCTC | 1 cut(s) | 117 |
| MboI | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| MboII | GAAGA | 5 cut(s) | 248, 298, 822, 908, 1060 |
| MhlI | GDGCHC | 1 cut(s) | 951 |
| MlsI | TGGCCA | 1 cut(s) | 1006 |
| MluCI | AATT | 9 cut(s) | 88, 137, 419, 503, 687, 723, 839, 977, 1028 |
| MluNI | TGGCCA | 1 cut(s) | 1006 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| MnlI | CCTC | 6 cut(s) | 182, 246, 749, 922, 933, 958 |
| Mox20I | TGGCCA | 1 cut(s) | 1006 |
| MroI | TCCGGA | 1 cut(s) | 991 |
| MscI | TGGCCA | 1 cut(s) | 1006 |
| MslI | CAYNNNNRTG | 3 cut(s) | 524, 752, 795 |
| Msp20I | TGGCCA | 1 cut(s) | 1006 |
| MspA1I | CMGCKG | 3 cut(s) | 199, 314, 919 |
| MspI | CCGG | 2 cut(s) | 849, 992 |
| MspR9I | CCNGG | 2 cut(s) | 80, 492 |
| MvaI | CCWGG | 2 cut(s) | 80, 492 |
| MvnI | CGCG | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 50, 272, 551, 576, 770, 860 |
| NcoI | CCATGG | 1 cut(s) | 753 |
| NdeI | CATATG | 1 cut(s) | 814 |
| NdeII | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| NlaIII | CATG | 4 cut(s) | 216, 235, 382, 757 |
| NlaIV | GGNNCC | 5 cut(s) | 84, 496, 563, 699, 708 |
| NmeAIII | GCCGAG | 1 cut(s) | 988 |
| NmuCI | GTSAC | 2 cut(s) | 625, 643 |
| NspI | RCATGY | 1 cut(s) | 235 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PceI | AGGCCT | 1 cut(s) | 932 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 594 |
| PfoI | TCCNGGA | 1 cut(s) | 490 |
| PinAI | ACCGGT | 1 cut(s) | 848 |
| PkrI | GCNGC | 8 cut(s) | 116, 145, 188, 201, 277, 316, 399, 921 |
| PpuMI | RGGWCCY | 1 cut(s) | 562 |
| Psp124BI | GAGCTC | 1 cut(s) | 951 |
| Psp5II | RGGWCCY | 1 cut(s) | 562 |
| Psp6I | CCWGG | 2 cut(s) | 78, 490 |
| PspGI | CCWGG | 2 cut(s) | 78, 490 |
| PspN4I | GGNNCC | 5 cut(s) | 84, 496, 563, 699, 708 |
| PspPI | GGNCC | 3 cut(s) | 562, 706, 994 |
| PspPPI | RGGWCCY | 1 cut(s) | 562 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| PvuII | CAGCTG | 2 cut(s) | 199, 919 |
| RsaI | GTAC | 6 cut(s) | 101, 230, 372, 575, 784, 891 |
| RsaNI | GTAC | 6 cut(s) | 100, 229, 371, 574, 783, 890 |
| RseI | CAYNNNNRTG | 3 cut(s) | 524, 752, 795 |
| SacI | GAGCTC | 1 cut(s) | 951 |
| SatI | GCNGC | 8 cut(s) | 115, 144, 187, 200, 276, 315, 398, 920 |
| Sau3AI | GATC | 4 cut(s) | 193, 337, 432, 1060 |
| Sau96I | GGNCC | 3 cut(s) | 562, 706, 994 |
| ScrFI | CCNGG | 2 cut(s) | 80, 492 |
| SduI | GDGCHC | 1 cut(s) | 951 |
| SfaNI | GCATC | 6 cut(s) | 211, 409, 532, 692, 978, 1030 |
| SfcI | CTRYAG | 1 cut(s) | 657 |
| SinI | GGWCC | 3 cut(s) | 562, 706, 994 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 524, 752, 795 |
| SmlI | CTYRAG | 2 cut(s) | 924, 952 |
| SmoI | CTYRAG | 2 cut(s) | 924, 952 |
| SpeI | ACTAGT | 1 cut(s) | 245 |
| Sse9I | AATT | 9 cut(s) | 88, 137, 419, 503, 687, 723, 839, 977, 1028 |
| SseBI | AGGCCT | 1 cut(s) | 932 |
| SsiI | CCGC | 5 cut(s) | 44, 115, 280, 314, 863 |
| SspMI | CTAG | 4 cut(s) | 54, 246, 408, 566 |
| SstI | GAGCTC | 1 cut(s) | 951 |
| StuI | AGGCCT | 1 cut(s) | 932 |
| StyD4I | CCNGG | 2 cut(s) | 78, 490 |
| StyI | CCWWGG | 4 cut(s) | 407, 498, 565, 753 |
| TaaI | ACNGT | 6 cut(s) | 159, 368, 375, 715, 731, 787 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TaqI | TCGA | 4 cut(s) | 92, 123, 204, 219 |
| TasI | AATT | 9 cut(s) | 88, 137, 419, 503, 687, 723, 839, 977, 1028 |
| TatI | WGTACW | 2 cut(s) | 228, 370 |
| TauI | GCSGC | 2 cut(s) | 117, 317 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| TscAI | CASTG | 7 cut(s) | 266, 634, 685, 708, 734, 792, 1050 |
| TseFI | GTSAC | 2 cut(s) | 625, 643 |
| TseI | GCWGC | 6 cut(s) | 143, 186, 199, 275, 397, 919 |
| Tsp45I | GTSAC | 2 cut(s) | 625, 643 |
| TspDTI | ATGAA | 4 cut(s) | 242, 367, 461, 822 |
| TspRI | CASTG | 7 cut(s) | 266, 634, 685, 708, 734, 792, 1050 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 594 |
| VpaK11BI | GGWCC | 3 cut(s) | 562, 706, 994 |
| XapI | RAATTY | 4 cut(s) | 137, 503, 839, 977 |
| XceI | RCATGY | 1 cut(s) | 235 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 505 |
| XmaJI | CCTAGG | 2 cut(s) | 407, 565 |
| XspI | CTAG | 4 cut(s) | 54, 246, 408, 566 |