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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 3 cut(s) | 49, 67, 273 |
| AccI | GTMKAC | 2 cut(s) | 548, 720 |
| AciI | CCGC | 2 cut(s) | 47, 77 |
| AclWI | GGATC | 2 cut(s) | 869, 1304 |
| AcoI | YGGCCR | 1 cut(s) | 86 |
| AcsI | RAATTY | 1 cut(s) | 1265 |
| AcuI | CTGAAG | 2 cut(s) | 752, 1319 |
| AfaI | GTAC | 6 cut(s) | 275, 908, 985, 1127, 1227, 1382 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 46, 446, 859, 1015 |
| AhlI | ACTAGT | 1 cut(s) | 1001 |
| AjnI | CCWGG | 1 cut(s) | 804 |
| AluBI | AGCT | 9 cut(s) | 235, 415, 466, 491, 538, 827, 956, 1297, 1440 |
| AluI | AGCT | 9 cut(s) | 235, 415, 466, 491, 538, 827, 956, 1297, 1440 |
| Alw21I | GWGCWC | 1 cut(s) | 1453 |
| Alw26I | GTCTC | 1 cut(s) | 288 |
| Alw44I | GTGCAC | 1 cut(s) | 1449 |
| AlwI | GGATC | 2 cut(s) | 869, 1304 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 538 |
| AoxI | GGCC | 3 cut(s) | 10, 86, 1154 |
| ApaLI | GTGCAC | 1 cut(s) | 1449 |
| ApeKI | GCWGC | 5 cut(s) | 44, 232, 396, 538, 739 |
| ApoI | RAATTY | 1 cut(s) | 1265 |
| Asp718I | GGTACC | 1 cut(s) | 273 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| AsuHPI | GGTGA | 3 cut(s) | 238, 296, 797 |
| AsuNHI | GCTAGC | 1 cut(s) | 491 |
| BaeGI | GKGCMC | 1 cut(s) | 1453 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1308, 1341 |
| BanI | GGYRCC | 3 cut(s) | 49, 67, 273 |
| BanII | GRGCYC | 1 cut(s) | 1399 |
| BbsI | GAAGAC | 5 cut(s) | 375, 477, 900, 1047, 1360 |
| Bbv12I | GWGCWC | 1 cut(s) | 1453 |
| BbvI | GCAGC | 5 cut(s) | 56, 244, 408, 525, 726 |
| BccI | CCATC | 6 cut(s) | 97, 565, 812, 1094, 1213, 1439 |
| BciT130I | CCWGG | 1 cut(s) | 806 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BcoDI | GTCTC | 1 cut(s) | 288 |
| BcuI | ACTAGT | 1 cut(s) | 1001 |
| BfaI | CTAG | 9 cut(s) | 23, 335, 429, 435, 492, 594, 758, 828, 1002 |
| BfmI | CTRYAG | 2 cut(s) | 879, 1320 |
| BisI | GCNGC | 7 cut(s) | 45, 48, 78, 233, 397, 539, 740 |
| BlsI | GCNGC | 7 cut(s) | 46, 49, 79, 234, 398, 540, 741 |
| Bme1390I | CCNGG | 2 cut(s) | 41, 806 |
| BmiI | GGNNCC | 5 cut(s) | 51, 69, 275, 1020, 1396 |
| BmrFI | CCNGG | 2 cut(s) | 41, 806 |
| BmsI | GCATC | 1 cut(s) | 1195 |
| BmtI | GCTAGC | 1 cut(s) | 495 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1004 |
| BpiI | GAAGAC | 5 cut(s) | 375, 477, 900, 1047, 1360 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1192, 1224 |
| BpmI | CTGGAG | 1 cut(s) | 563 |
| BpuEI | CTTGAG | 1 cut(s) | 1385 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| BsaBI | GATNNNNATC | 1 cut(s) | 873 |
| BsaJI | CCNNGG | 1 cut(s) | 124 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 150, 180, 1106, 1136 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 46, 446, 859, 1015 |
| Bse118I | RCCGGY | 1 cut(s) | 70 |
| Bse3DI | GCAATG | 4 cut(s) | 502, 593, 614, 749 |
| Bse8I | GATNNNNATC | 1 cut(s) | 873 |
| BseBI | CCWGG | 1 cut(s) | 806 |
| BseDI | CCNNGG | 1 cut(s) | 124 |
| BseJI | GATNNNNATC | 1 cut(s) | 873 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 46, 446, 859, 1015 |
| BseMI | GCAATG | 4 cut(s) | 502, 593, 614, 749 |
| BseRI | GAGGAG | 2 cut(s) | 846, 1127 |
| BseSI | GKGCMC | 1 cut(s) | 1453 |
| BseXI | GCAGC | 5 cut(s) | 56, 244, 408, 525, 726 |
| BseYI | CCCAGC | 1 cut(s) | 1236 |
| BsgI | GTGCAG | 1 cut(s) | 644 |
| BshFI | GGCC | 3 cut(s) | 12, 88, 1156 |
| BshNI | GGYRCC | 3 cut(s) | 49, 67, 273 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1453 |
| BsiSI | CCGG | 3 cut(s) | 41, 71, 85 |
| BslFI | GGGAC | 4 cut(s) | 187, 345, 835, 1295 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 46, 446, 859, 1015 |
| BsmAI | GTCTC | 1 cut(s) | 288 |
| BsmBI | CGTCTC | 1 cut(s) | 288 |
| BsmFI | GGGAC | 4 cut(s) | 187, 345, 835, 1295 |
| BsnI | GGCC | 3 cut(s) | 12, 88, 1156 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1399, 1453 |
| Bsp1407I | TGTACA | 2 cut(s) | 1225, 1380 |
| Bsp143I | GATC | 2 cut(s) | 874, 1309 |
| Bsp19I | CCATGG | 1 cut(s) | 124 |
| BspACI | CCGC | 2 cut(s) | 47, 77 |
| BspANI | GGCC | 3 cut(s) | 12, 88, 1156 |
| BspLI | GGNNCC | 5 cut(s) | 51, 69, 275, 1020, 1396 |
| BspOI | GCTAGC | 1 cut(s) | 495 |
| BspPI | GGATC | 2 cut(s) | 869, 1304 |
| BspQI | GCTCTTC | 1 cut(s) | 405 |
| BspT107I | GGYRCC | 3 cut(s) | 49, 67, 273 |
| BsrDI | GCAATG | 4 cut(s) | 502, 593, 614, 749 |
| BsrFI | RCCGGY | 1 cut(s) | 70 |
| BsrGI | TGTACA | 2 cut(s) | 1225, 1380 |
| BssAI | RCCGGY | 1 cut(s) | 70 |
| BssECI | CCNNGG | 1 cut(s) | 124 |
| BssMI | GATC | 2 cut(s) | 874, 1309 |
| BssNAI | GTATAC | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 1 cut(s) | 124 |
| Bst1107I | GTATAC | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 1 cut(s) | 806 |
| Bst4CI | ACNGT | 4 cut(s) | 112, 988, 1189, 1324 |
| Bst6I | CTCTTC | 2 cut(s) | 405, 1295 |
| BstAUI | TGTACA | 2 cut(s) | 1225, 1380 |
| BstC8I | GCNNGC | 1 cut(s) | 493 |
| BstDEI | CTNAG | 1 cut(s) | 1211 |
| BstDSI | CCRYGG | 1 cut(s) | 124 |
| BstKTI | GATC | 2 cut(s) | 877, 1312 |
| BstMAI | GTCTC | 1 cut(s) | 288 |
| BstMBI | GATC | 2 cut(s) | 874, 1309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 497 |
| BstNI | CCWGG | 1 cut(s) | 806 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1004 |
| BstSCI | CCNGG | 2 cut(s) | 39, 804 |
| BstSFI | CTRYAG | 2 cut(s) | 879, 1320 |
| BstSLI | GKGCMC | 1 cut(s) | 1453 |
| BstV1I | GCAGC | 5 cut(s) | 56, 244, 408, 525, 726 |
| BstV2I | GAAGAC | 5 cut(s) | 375, 477, 900, 1047, 1360 |
| BstZ17I | GTATAC | 1 cut(s) | 549 |
| BsuRI | GGCC | 3 cut(s) | 12, 88, 1156 |
| BtgI | CCRYGG | 1 cut(s) | 124 |
| BtsI | GCAGTG | 2 cut(s) | 53, 799 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 799 |
| Cac8I | GCNNGC | 1 cut(s) | 493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 538 |
| Cfr10I | RCCGGY | 1 cut(s) | 70 |
| Csp6I | GTAC | 6 cut(s) | 274, 907, 984, 1126, 1226, 1381 |
| CviAII | CATG | 5 cut(s) | 125, 476, 947, 1013, 1165 |
| CviQI | GTAC | 6 cut(s) | 274, 907, 984, 1126, 1226, 1381 |
| DdeI | CTNAG | 1 cut(s) | 1211 |
| DpnI | GATC | 2 cut(s) | 876, 1311 |
| DpnII | GATC | 2 cut(s) | 874, 1309 |
| EaeI | YGGCCR | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 2 cut(s) | 405, 1295 |
| EarI | CTCTTC | 2 cut(s) | 405, 1295 |
| Eco130I | CCWWGG | 1 cut(s) | 124 |
| Eco147I | AGGCCT | 1 cut(s) | 1156 |
| Eco24I | GRGCYC | 1 cut(s) | 1399 |
| Eco57I | CTGAAG | 2 cut(s) | 752, 1319 |
| EcoRII | CCWGG | 1 cut(s) | 804 |
| EcoT14I | CCWWGG | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 1 cut(s) | 1399 |
| ErhI | CCWWGG | 1 cut(s) | 124 |
| Esp3I | CGTCTC | 1 cut(s) | 288 |
| FaeI | CATG | 5 cut(s) | 128, 479, 950, 1016, 1168 |
| FaqI | GGGAC | 4 cut(s) | 187, 345, 835, 1295 |
| FatI | CATG | 5 cut(s) | 124, 475, 946, 1012, 1164 |
| FauNDI | CATATG | 1 cut(s) | 775 |
| FblI | GTMKAC | 2 cut(s) | 548, 720 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 48, 78, 233, 397, 539, 740 |
| FriOI | GRGCYC | 1 cut(s) | 1399 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 48, 78, 233, 397, 539, 740 |
| FspBI | CTAG | 9 cut(s) | 23, 335, 429, 435, 492, 594, 758, 828, 1002 |
| GluI | GCNGC | 7 cut(s) | 45, 48, 78, 233, 397, 539, 740 |
| GsaI | CCCAGC | 1 cut(s) | 1240 |
| GsuI | CTGGAG | 1 cut(s) | 563 |
| HaeIII | GGCC | 3 cut(s) | 12, 88, 1156 |
| HapII | CCGG | 3 cut(s) | 41, 71, 85 |
| Hin1II | CATG | 5 cut(s) | 128, 479, 950, 1016, 1168 |
| HincII | GTYRAC | 3 cut(s) | 751, 802, 1093 |
| HindII | GTYRAC | 3 cut(s) | 751, 802, 1093 |
| HindIII | AAGCTT | 1 cut(s) | 954 |
| HinfI | GANTC | 3 cut(s) | 457, 1360, 1410 |
| HpaII | CCGG | 3 cut(s) | 41, 71, 85 |
| HphI | GGTGA | 3 cut(s) | 238, 296, 797 |
| Hpy166II | GTNNAC | 7 cut(s) | 187, 549, 721, 751, 802, 1093, 1451 |
| Hpy188I | TCNGA | 4 cut(s) | 562, 850, 1099, 1194 |
| Hpy188III | TCNNGA | 7 cut(s) | 98, 115, 461, 633, 758, 1313, 1402 |
| Hpy8I | GTNNAC | 7 cut(s) | 187, 549, 721, 751, 802, 1093, 1451 |
| HpyAV | CCTTC | 4 cut(s) | 284, 722, 764, 1146 |
| HpyCH4III | ACNGT | 4 cut(s) | 112, 988, 1189, 1324 |
| HpyCH4V | TGCA | 5 cut(s) | 251, 586, 625, 742, 1451 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 497 |
| HpyF3I | CTNAG | 1 cut(s) | 1211 |
| Hsp92II | CATG | 5 cut(s) | 128, 479, 950, 1016, 1168 |
| KpnI | GGTACC | 1 cut(s) | 277 |
| Kzo9I | GATC | 2 cut(s) | 874, 1309 |
| LguI | GCTCTTC | 1 cut(s) | 405 |
| LmnI | GCTCC | 2 cut(s) | 463, 1394 |
| Lsp1109I | GCAGC | 5 cut(s) | 56, 244, 408, 525, 726 |
| LweI | GCATC | 1 cut(s) | 1195 |
| MaeI | CTAG | 9 cut(s) | 23, 335, 429, 435, 492, 594, 758, 828, 1002 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 2 cut(s) | 876, 1311 |
| MboI | GATC | 2 cut(s) | 874, 1309 |
| MhlI | GDGCHC | 2 cut(s) | 1399, 1453 |
| MluCI | AATT | 3 cut(s) | 511, 1081, 1265 |
| MmeI | TCCRAC | 4 cut(s) | 136, 912, 970, 1033 |
| MseI | TTAA | 5 cut(s) | 137, 510, 1131, 1277, 1332 |
| MspA1I | CMGCKG | 1 cut(s) | 47 |
| MspI | CCGG | 3 cut(s) | 41, 71, 85 |
| MspR9I | CCNGG | 2 cut(s) | 41, 806 |
| MvaI | CCWGG | 1 cut(s) | 806 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 497 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NcoI | CCATGG | 1 cut(s) | 124 |
| NdeI | CATATG | 1 cut(s) | 775 |
| NdeII | GATC | 2 cut(s) | 874, 1309 |
| NheI | GCTAGC | 1 cut(s) | 491 |
| NlaIII | CATG | 5 cut(s) | 128, 479, 950, 1016, 1168 |
| NlaIV | GGNNCC | 5 cut(s) | 51, 69, 275, 1020, 1396 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| PceI | AGGCCT | 1 cut(s) | 1156 |
| PciSI | GCTCTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 457, 1360, 1410 |
| PflFI | GACNNNGTC | 1 cut(s) | 899 |
| PkrI | GCNGC | 7 cut(s) | 46, 49, 79, 234, 398, 540, 741 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1004 |
| Psp6I | CCWGG | 1 cut(s) | 804 |
| PspFI | CCCAGC | 1 cut(s) | 1236 |
| PspGI | CCWGG | 1 cut(s) | 804 |
| PspN4I | GGNNCC | 5 cut(s) | 51, 69, 275, 1020, 1396 |
| PstNI | CAGNNNCTG | 1 cut(s) | 538 |
| PsyI | GACNNNGTC | 1 cut(s) | 899 |
| RsaI | GTAC | 6 cut(s) | 275, 908, 985, 1127, 1227, 1382 |
| RsaNI | GTAC | 6 cut(s) | 274, 907, 984, 1126, 1226, 1381 |
| SapI | GCTCTTC | 1 cut(s) | 405 |
| SaqAI | TTAA | 5 cut(s) | 137, 510, 1131, 1277, 1332 |
| SatI | GCNGC | 7 cut(s) | 45, 48, 78, 233, 397, 539, 740 |
| Sau3AI | GATC | 2 cut(s) | 874, 1309 |
| ScrFI | CCNGG | 2 cut(s) | 41, 806 |
| SduI | GDGCHC | 2 cut(s) | 1399, 1453 |
| SfaNI | GCATC | 1 cut(s) | 1195 |
| SfcI | CTRYAG | 2 cut(s) | 879, 1320 |
| SmlI | CTYRAG | 1 cut(s) | 1400 |
| SmoI | CTYRAG | 1 cut(s) | 1400 |
| SpeI | ACTAGT | 1 cut(s) | 1001 |
| Sse9I | AATT | 3 cut(s) | 511, 1081, 1265 |
| SseBI | AGGCCT | 1 cut(s) | 1156 |
| SsiI | CCGC | 2 cut(s) | 47, 77 |
| SspMI | CTAG | 9 cut(s) | 23, 335, 429, 435, 492, 594, 758, 828, 1002 |
| StuI | AGGCCT | 1 cut(s) | 1156 |
| StyD4I | CCNGG | 2 cut(s) | 39, 804 |
| StyI | CCWWGG | 1 cut(s) | 124 |
| TaaI | ACNGT | 4 cut(s) | 112, 988, 1189, 1324 |
| TaqI | TCGA | 3 cut(s) | 30, 168, 1326 |
| TasI | AATT | 3 cut(s) | 511, 1081, 1265 |
| TatI | WGTACW | 3 cut(s) | 1125, 1225, 1380 |
| TauI | GCSGC | 2 cut(s) | 50, 80 |
| TfiI | GAWTC | 3 cut(s) | 457, 1360, 1410 |
| Tru1I | TTAA | 5 cut(s) | 137, 510, 1131, 1277, 1332 |
| Tru9I | TTAA | 5 cut(s) | 137, 510, 1131, 1277, 1332 |
| TscAI | CASTG | 2 cut(s) | 60, 799 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 5 cut(s) | 44, 232, 396, 538, 739 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspRI | CASTG | 2 cut(s) | 60, 799 |
| Tth111I | GACNNNGTC | 1 cut(s) | 899 |
| VneI | GTGCAC | 1 cut(s) | 1449 |
| XapI | RAATTY | 1 cut(s) | 1265 |
| XbaI | TCTAGA | 1 cut(s) | 757 |
| XmiI | GTMKAC | 2 cut(s) | 548, 720 |
| XspI | CTAG | 9 cut(s) | 23, 335, 429, 435, 492, 594, 758, 828, 1002 |