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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 340 |
| Acc36I | ACCTGC | 1 cut(s) | 340 |
| Acc65I | GGTACC | 1 cut(s) | 215 |
| AccB1I | GGYRCC | 1 cut(s) | 215 |
| AfaI | GTAC | 1 cut(s) | 217 |
| AgsI | TTSAA | 1 cut(s) | 366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 346, 378 |
| AleI | CACNNNNGTG | 1 cut(s) | 185 |
| AluBI | AGCT | 6 cut(s) | 175, 247, 290, 314, 398, 407 |
| AluI | AGCT | 6 cut(s) | 175, 247, 290, 314, 398, 407 |
| Alw26I | GTCTC | 1 cut(s) | 340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 332 |
| ApeKI | GCWGC | 4 cut(s) | 4, 158, 308, 311 |
| Asp718I | GGTACC | 1 cut(s) | 215 |
| AspS9I | GGNCC | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BanI | GGYRCC | 1 cut(s) | 215 |
| BbvI | GCAGC | 4 cut(s) | 16, 170, 320, 323 |
| BccI | CCATC | 1 cut(s) | 5 |
| BcoDI | GTCTC | 1 cut(s) | 340 |
| BfaI | CTAG | 2 cut(s) | 291, 315 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfuAI | ACCTGC | 1 cut(s) | 340 |
| BisI | GCNGC | 4 cut(s) | 5, 159, 309, 312 |
| BlsI | GCNGC | 4 cut(s) | 6, 160, 310, 313 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 1 cut(s) | 61 |
| BmiI | GGNNCC | 2 cut(s) | 62, 217 |
| BmsI | GCATC | 1 cut(s) | 389 |
| BsaI | GGTCTC | 1 cut(s) | 340 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseXI | GCAGC | 4 cut(s) | 16, 170, 320, 323 |
| BsgI | GTGCAG | 1 cut(s) | 372 |
| BshNI | GGYRCC | 1 cut(s) | 215 |
| BsmAI | GTCTC | 1 cut(s) | 340 |
| BsmI | GAATGC | 1 cut(s) | 448 |
| Bso31I | GGTCTC | 1 cut(s) | 340 |
| Bsp143I | GATC | 1 cut(s) | 24 |
| BspLI | GGNNCC | 2 cut(s) | 62, 217 |
| BspMAI | CTGCAG | 1 cut(s) | 24 |
| BspMI | ACCTGC | 1 cut(s) | 340 |
| BspQI | GCTCTTC | 1 cut(s) | 262 |
| BspT107I | GGYRCC | 1 cut(s) | 215 |
| BspTNI | GGTCTC | 1 cut(s) | 340 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BssMI | GATC | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 3 cut(s) | 161, 262, 334 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstDEI | CTNAG | 3 cut(s) | 204, 210, 248 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstKTI | GATC | 1 cut(s) | 27 |
| BstMAI | GTCTC | 1 cut(s) | 340 |
| BstMBI | GATC | 1 cut(s) | 24 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 386, 395, 404 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 4 cut(s) | 16, 170, 320, 323 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| BtsI | GCAGTG | 1 cut(s) | 17 |
| BtsIMutI | CAGTG | 1 cut(s) | 17 |
| BveI | ACCTGC | 1 cut(s) | 340 |
| CaiI | CAGNNNCTG | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 61 |
| Csp6I | GTAC | 1 cut(s) | 216 |
| CviAII | CATG | 2 cut(s) | 8, 65 |
| CviJI | RGCY | 9 cut(s) | 124, 175, 208, 247, 272, 290, 314, 398, 407 |
| CviKI_1 | RGCY | 9 cut(s) | 124, 175, 208, 247, 272, 290, 314, 398, 407 |
| CviQI | GTAC | 1 cut(s) | 216 |
| DdeI | CTNAG | 3 cut(s) | 204, 210, 248 |
| DpnI | GATC | 1 cut(s) | 26 |
| DpnII | GATC | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 3 cut(s) | 161, 262, 334 |
| EarI | CTCTTC | 3 cut(s) | 161, 262, 334 |
| Eco31I | GGTCTC | 1 cut(s) | 340 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| FaeI | CATG | 2 cut(s) | 11, 68 |
| FaiI | YATR | 2 cut(s) | 9, 66 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 20, 52, 231, 263 |
| FatI | CATG | 2 cut(s) | 7, 64 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 159, 309, 312 |
| FokI | GGATG | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 159, 309, 312 |
| FspBI | CTAG | 2 cut(s) | 291, 315 |
| GluI | GCNGC | 4 cut(s) | 5, 159, 309, 312 |
| Hin1II | CATG | 2 cut(s) | 11, 68 |
| HindIII | AAGCTT | 2 cut(s) | 396, 405 |
| HinfI | GANTC | 2 cut(s) | 70, 429 |
| Hpy188I | TCNGA | 1 cut(s) | 83 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 22, 56, 158, 335, 374, 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 386, 395, 404 |
| HpyF3I | CTNAG | 3 cut(s) | 204, 210, 248 |
| Hsp92II | CATG | 2 cut(s) | 11, 68 |
| KpnI | GGTACC | 1 cut(s) | 219 |
| Kzo9I | GATC | 1 cut(s) | 24 |
| LguI | GCTCTTC | 1 cut(s) | 262 |
| LpnPI | CCDG | 4 cut(s) | 87, 183, 345, 432 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 170, 320, 323 |
| LweI | GCATC | 1 cut(s) | 389 |
| MaeI | CTAG | 2 cut(s) | 291, 315 |
| MaeIII | GTNAC | 1 cut(s) | 136 |
| MalI | GATC | 1 cut(s) | 26 |
| MboI | GATC | 1 cut(s) | 24 |
| MboII | GAAGA | 4 cut(s) | 178, 279, 351, 375 |
| MnlI | CCTC | 1 cut(s) | 335 |
| MslI | CAYNNNNRTG | 2 cut(s) | 51, 185 |
| Mva1269I | GAATGC | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 386, 395, 404 |
| NdeII | GATC | 1 cut(s) | 24 |
| NlaIII | CATG | 2 cut(s) | 11, 68 |
| NlaIV | GGNNCC | 2 cut(s) | 62, 217 |
| OliI | CACNNNNGTG | 1 cut(s) | 185 |
| PaqCI | CACCTGC | 1 cut(s) | 340 |
| PciSI | GCTCTTC | 1 cut(s) | 262 |
| PctI | GAATGC | 1 cut(s) | 448 |
| PfeI | GAWTC | 2 cut(s) | 70, 429 |
| PkrI | GCNGC | 4 cut(s) | 6, 160, 310, 313 |
| PspN4I | GGNNCC | 2 cut(s) | 62, 217 |
| PspPI | GGNCC | 1 cut(s) | 61 |
| PstI | CTGCAG | 1 cut(s) | 24 |
| PstNI | CAGNNNCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 217 |
| RsaNI | GTAC | 1 cut(s) | 216 |
| RseI | CAYNNNNRTG | 2 cut(s) | 51, 185 |
| SapI | GCTCTTC | 1 cut(s) | 262 |
| SatI | GCNGC | 4 cut(s) | 5, 159, 309, 312 |
| Sau3AI | GATC | 1 cut(s) | 24 |
| Sau96I | GGNCC | 1 cut(s) | 61 |
| SetI | ASST | 9 cut(s) | 96, 177, 249, 292, 316, 334, 361, 400, 409 |
| SfaNI | GCATC | 1 cut(s) | 389 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SinI | GGWCC | 1 cut(s) | 61 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 51, 185 |
| SspMI | CTAG | 2 cut(s) | 291, 315 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TfiI | GAWTC | 2 cut(s) | 70, 429 |
| TscAI | CASTG | 1 cut(s) | 24 |
| TseI | GCWGC | 4 cut(s) | 4, 158, 308, 311 |
| TspDTI | ATGAA | 2 cut(s) | 183, 399 |
| TspRI | CASTG | 1 cut(s) | 24 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| XspI | CTAG | 2 cut(s) | 291, 315 |