No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPN2_C | PF18004 | 217 - 243 | 1.6e-06 | 26S proteasome regulatory subunit RPN2 C-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 450 |
| AccB1I | GGYRCC | 1 cut(s) | 350 |
| AccIII | TCCGGA | 1 cut(s) | 494 |
| AciI | CCGC | 2 cut(s) | 269, 424 |
| AclWI | GGATC | 1 cut(s) | 373 |
| AcsI | RAATTY | 1 cut(s) | 498 |
| AcyI | GRCGYC | 1 cut(s) | 272 |
| AfaI | GTAC | 2 cut(s) | 332, 605 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 347 |
| AflII | CTTAAG | 1 cut(s) | 628 |
| AgsI | TTSAA | 3 cut(s) | 311, 392, 728 |
| AluBI | AGCT | 5 cut(s) | 256, 314, 395, 633, 653 |
| AluI | AGCT | 5 cut(s) | 256, 314, 395, 633, 653 |
| Alw26I | GTCTC | 1 cut(s) | 253 |
| AlwI | GGATC | 1 cut(s) | 373 |
| Aor13HI | TCCGGA | 1 cut(s) | 494 |
| AoxI | GGCC | 2 cut(s) | 489, 577 |
| ApoI | RAATTY | 1 cut(s) | 498 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 441 |
| AsuHPI | GGTGA | 1 cut(s) | 636 |
| BaeGI | GKGCMC | 1 cut(s) | 355 |
| BanI | GGYRCC | 1 cut(s) | 350 |
| BauI | CACGAG | 1 cut(s) | 405 |
| BceAI | ACGGC | 1 cut(s) | 230 |
| BciVI | GTATCC | 1 cut(s) | 621 |
| BcoDI | GTCTC | 1 cut(s) | 253 |
| BfaI | CTAG | 2 cut(s) | 39, 396 |
| BfmI | CTRYAG | 1 cut(s) | 567 |
| BfrI | CTTAAG | 1 cut(s) | 628 |
| BfuI | GTATCC | 1 cut(s) | 621 |
| BisI | GCNGC | 2 cut(s) | 270, 425 |
| BlsI | GCNGC | 2 cut(s) | 271, 426 |
| BmiI | GGNNCC | 1 cut(s) | 352 |
| BmsI | GCATC | 2 cut(s) | 36, 496 |
| BsaBI | GATNNNNATC | 1 cut(s) | 174 |
| BsaHI | GRCGYC | 1 cut(s) | 272 |
| BsaWI | WCCGGW | 1 cut(s) | 494 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 347 |
| Bse1I | ACTGG | 1 cut(s) | 611 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 369 |
| Bse8I | GATNNNNATC | 1 cut(s) | 174 |
| BseAI | TCCGGA | 1 cut(s) | 494 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseJI | GATNNNNATC | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BseMI | GCAATG | 2 cut(s) | 357, 369 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 1 cut(s) | 611 |
| BseSI | GKGCMC | 1 cut(s) | 355 |
| BshFI | GGCC | 2 cut(s) | 491, 579 |
| BshNI | GGYRCC | 1 cut(s) | 350 |
| BsiSI | CCGG | 1 cut(s) | 495 |
| BslFI | GGGAC | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BsmAI | GTCTC | 1 cut(s) | 253 |
| BsmBI | CGTCTC | 1 cut(s) | 253 |
| BsmFI | GGGAC | 1 cut(s) | 241 |
| BsnI | GGCC | 2 cut(s) | 491, 579 |
| Bsp1286I | GDGCHC | 1 cut(s) | 355 |
| Bsp13I | TCCGGA | 1 cut(s) | 494 |
| Bsp143I | GATC | 4 cut(s) | 169, 175, 378, 673 |
| BspACI | CCGC | 2 cut(s) | 269, 424 |
| BspANI | GGCC | 2 cut(s) | 491, 579 |
| BspCNI | CTCAG | 1 cut(s) | 347 |
| BspEI | TCCGGA | 1 cut(s) | 494 |
| BspHI | TCATGA | 1 cut(s) | 375 |
| BspLI | GGNNCC | 1 cut(s) | 352 |
| BspMAI | CTGCAG | 1 cut(s) | 571 |
| BspPI | GGATC | 1 cut(s) | 373 |
| BspT107I | GGYRCC | 1 cut(s) | 350 |
| BspTI | CTTAAG | 1 cut(s) | 628 |
| BsrDI | GCAATG | 2 cut(s) | 357, 369 |
| BsrI | ACTGG | 1 cut(s) | 611 |
| BssMI | GATC | 4 cut(s) | 169, 175, 378, 673 |
| BssNI | GRCGYC | 1 cut(s) | 272 |
| BssSI | CACGAG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 118 |
| Bst6I | CTCTTC | 1 cut(s) | 121 |
| BstACI | GRCGYC | 1 cut(s) | 272 |
| BstAFI | CTTAAG | 1 cut(s) | 628 |
| BstC8I | GCNNGC | 3 cut(s) | 51, 235, 708 |
| BstDEI | CTNAG | 3 cut(s) | 334, 543, 677 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstKTI | GATC | 4 cut(s) | 172, 178, 381, 676 |
| BstMAI | GTCTC | 1 cut(s) | 253 |
| BstMBI | GATC | 4 cut(s) | 169, 175, 378, 673 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 311, 359, 488 |
| BstNSI | RCATGY | 1 cut(s) | 710 |
| BstSFI | CTRYAG | 1 cut(s) | 567 |
| BstSLI | GKGCMC | 1 cut(s) | 355 |
| BsuI | GTATCC | 1 cut(s) | 621 |
| BsuRI | GGCC | 2 cut(s) | 491, 579 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 3 cut(s) | 51, 235, 708 |
| CciI | TCATGA | 1 cut(s) | 375 |
| CseI | GACGC | 1 cut(s) | 261 |
| Csp6I | GTAC | 2 cut(s) | 331, 604 |
| CviAII | CATG | 6 cut(s) | 13, 62, 376, 466, 554, 707 |
| CviQI | GTAC | 2 cut(s) | 331, 604 |
| DdeI | CTNAG | 3 cut(s) | 334, 543, 677 |
| DpnI | GATC | 4 cut(s) | 171, 177, 380, 675 |
| DpnII | GATC | 4 cut(s) | 169, 175, 378, 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 121 |
| EarI | CTCTTC | 1 cut(s) | 121 |
| EcoRI | GAATTC | 1 cut(s) | 498 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| Esp3I | CGTCTC | 1 cut(s) | 253 |
| FaeI | CATG | 6 cut(s) | 16, 65, 379, 469, 557, 710 |
| FaqI | GGGAC | 1 cut(s) | 241 |
| FatI | CATG | 6 cut(s) | 12, 61, 375, 465, 553, 706 |
| Fnu4HI | GCNGC | 2 cut(s) | 270, 425 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 270, 425 |
| FspBI | CTAG | 2 cut(s) | 39, 396 |
| GluI | GCNGC | 2 cut(s) | 270, 425 |
| HaeIII | GGCC | 2 cut(s) | 491, 579 |
| HapII | CCGG | 1 cut(s) | 495 |
| HgaI | GACGC | 1 cut(s) | 261 |
| Hin1I | GRCGYC | 1 cut(s) | 272 |
| Hin1II | CATG | 6 cut(s) | 16, 65, 379, 469, 557, 710 |
| HindIII | AAGCTT | 1 cut(s) | 631 |
| HinfI | GANTC | 2 cut(s) | 143, 401 |
| HpaII | CCGG | 1 cut(s) | 495 |
| HphI | GGTGA | 1 cut(s) | 636 |
| Hpy166II | GTNNAC | 1 cut(s) | 8 |
| Hpy188I | TCNGA | 3 cut(s) | 277, 337, 687 |
| Hpy188III | TCNNGA | 5 cut(s) | 173, 376, 382, 495, 503 |
| Hpy8I | GTNNAC | 1 cut(s) | 8 |
| Hpy99I | CGWCG | 1 cut(s) | 277 |
| HpyAV | CCTTC | 2 cut(s) | 28, 726 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 118 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 206, 362, 569, 710 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 311, 359, 488 |
| HpyF3I | CTNAG | 3 cut(s) | 334, 543, 677 |
| Hsp92I | GRCGYC | 1 cut(s) | 272 |
| Hsp92II | CATG | 6 cut(s) | 16, 65, 379, 469, 557, 710 |
| Kpn2I | TCCGGA | 1 cut(s) | 494 |
| Kzo9I | GATC | 4 cut(s) | 169, 175, 378, 673 |
| LmnI | GCTCC | 1 cut(s) | 479 |
| LpnPI | CCDG | 8 cut(s) | 73, 150, 354, 395, 495, 508, 592, 713 |
| LweI | GCATC | 2 cut(s) | 36, 496 |
| MaeI | CTAG | 2 cut(s) | 39, 396 |
| MaeIII | GTNAC | 2 cut(s) | 523, 562 |
| MalI | GATC | 4 cut(s) | 171, 177, 380, 675 |
| MboI | GATC | 4 cut(s) | 169, 175, 378, 673 |
| MboII | GAAGA | 4 cut(s) | 138, 143, 446, 528 |
| MfeI | CAATTG | 1 cut(s) | 428 |
| MhlI | GDGCHC | 1 cut(s) | 355 |
| MluCI | AATT | 6 cut(s) | 150, 428, 441, 498, 573, 596 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MmeI | TCCRAC | 1 cut(s) | 255 |
| MnlI | CCTC | 5 cut(s) | 67, 218, 365, 502, 626 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MroI | TCCGGA | 1 cut(s) | 494 |
| MroXI | GAANNNNTTC | 1 cut(s) | 441 |
| MseI | TTAA | 2 cut(s) | 153, 629 |
| MslI | CAYNNNNRTG | 1 cut(s) | 362 |
| MspCI | CTTAAG | 1 cut(s) | 628 |
| MspI | CCGG | 1 cut(s) | 495 |
| MunI | CAATTG | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 311, 359, 488 |
| NdeII | GATC | 4 cut(s) | 169, 175, 378, 673 |
| NlaIII | CATG | 6 cut(s) | 16, 65, 379, 469, 557, 710 |
| NlaIV | GGNNCC | 1 cut(s) | 352 |
| NmuCI | GTSAC | 2 cut(s) | 523, 562 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| NspI | RCATGY | 1 cut(s) | 710 |
| PaeI | GCATGC | 1 cut(s) | 710 |
| PagI | TCATGA | 1 cut(s) | 375 |
| PdmI | GAANNNNTTC | 1 cut(s) | 441 |
| PfeI | GAWTC | 1 cut(s) | 401 |
| PkrI | GCNGC | 2 cut(s) | 271, 426 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PsiI | TTATAA | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 1 cut(s) | 352 |
| PstI | CTGCAG | 1 cut(s) | 571 |
| RsaI | GTAC | 2 cut(s) | 332, 605 |
| RsaNI | GTAC | 2 cut(s) | 331, 604 |
| RseI | CAYNNNNRTG | 1 cut(s) | 362 |
| SaqAI | TTAA | 2 cut(s) | 153, 629 |
| SatI | GCNGC | 2 cut(s) | 270, 425 |
| Sau3AI | GATC | 4 cut(s) | 169, 175, 378, 673 |
| SchI | GAGTC | 1 cut(s) | 137 |
| SduI | GDGCHC | 1 cut(s) | 355 |
| SetI | ASST | 6 cut(s) | 258, 316, 397, 635, 655, 718 |
| SfaNI | GCATC | 2 cut(s) | 36, 496 |
| SfcI | CTRYAG | 1 cut(s) | 567 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 362 |
| SmlI | CTYRAG | 1 cut(s) | 628 |
| SmoI | CTYRAG | 1 cut(s) | 628 |
| SphI | GCATGC | 1 cut(s) | 710 |
| Sse9I | AATT | 6 cut(s) | 150, 428, 441, 498, 573, 596 |
| SsiI | CCGC | 2 cut(s) | 269, 424 |
| SspMI | CTAG | 2 cut(s) | 39, 396 |
| TaaI | ACNGT | 2 cut(s) | 25, 118 |
| TaqI | TCGA | 1 cut(s) | 172 |
| TasI | AATT | 6 cut(s) | 150, 428, 441, 498, 573, 596 |
| TatI | WGTACW | 1 cut(s) | 330 |
| TauI | GCSGC | 2 cut(s) | 272, 427 |
| TfiI | GAWTC | 1 cut(s) | 401 |
| Tru1I | TTAA | 2 cut(s) | 153, 629 |
| Tru9I | TTAA | 2 cut(s) | 153, 629 |
| TscAI | CASTG | 1 cut(s) | 571 |
| TseFI | GTSAC | 2 cut(s) | 523, 562 |
| Tsp45I | GTSAC | 2 cut(s) | 523, 562 |
| TspDTI | ATGAA | 1 cut(s) | 78 |
| TspRI | CASTG | 1 cut(s) | 571 |
| Vha464I | CTTAAG | 1 cut(s) | 628 |
| XapI | RAATTY | 1 cut(s) | 498 |
| XceI | RCATGY | 1 cut(s) | 710 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 472 |
| XmnI | GAANNNNTTC | 1 cut(s) | 441 |
| XspI | CTAG | 2 cut(s) | 39, 396 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |