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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 380, 393 |
| AfaI | GTAC | 2 cut(s) | 269, 340 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 89, 124, 299 |
| AgsI | TTSAA | 3 cut(s) | 280, 355, 410 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AluBI | AGCT | 5 cut(s) | 50, 194, 313, 382, 425 |
| AluI | AGCT | 5 cut(s) | 50, 194, 313, 382, 425 |
| AlwI | GGATC | 2 cut(s) | 380, 393 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 382 |
| Ama87I | CYCGRG | 1 cut(s) | 124 |
| AoxI | GGCC | 4 cut(s) | 80, 115, 127, 301 |
| ApeKI | GCWGC | 5 cut(s) | 47, 75, 326, 376, 379 |
| AspS9I | GGNCC | 2 cut(s) | 115, 127 |
| AsuC2I | CCSGG | 2 cut(s) | 125, 126 |
| AvaI | CYCGRG | 1 cut(s) | 124 |
| BamHI | GGATCC | 1 cut(s) | 385 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 260, 292 |
| BbvI | GCAGC | 5 cut(s) | 59, 62, 338, 388, 391 |
| BccI | CCATC | 2 cut(s) | 65, 92 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BcnI | CCSGG | 2 cut(s) | 125, 126 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfmI | CTRYAG | 2 cut(s) | 76, 189 |
| BisI | GCNGC | 5 cut(s) | 48, 76, 327, 377, 380 |
| BlsI | GCNGC | 5 cut(s) | 49, 77, 328, 378, 381 |
| Bme1390I | CCNGG | 3 cut(s) | 125, 126, 294 |
| BmeT110I | CYCGRG | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 127 |
| BmiI | GGNNCC | 1 cut(s) | 387 |
| BmrFI | CCNGG | 3 cut(s) | 125, 126, 294 |
| BmsI | GCATC | 4 cut(s) | 145, 298, 313, 363 |
| BpuMI | CCSGG | 2 cut(s) | 125, 126 |
| BsaBI | GATNNNNATC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 1 cut(s) | 124 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 89, 124, 299 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| Bse8I | GATNNNNATC | 1 cut(s) | 417 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseDI | CCNNGG | 1 cut(s) | 124 |
| BseGI | GGATG | 7 cut(s) | 16, 76, 103, 174, 289, 328, 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 417 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 89, 124, 299 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseRI | GAGGAG | 1 cut(s) | 31 |
| BseXI | GCAGC | 5 cut(s) | 59, 62, 338, 388, 391 |
| BshFI | GGCC | 4 cut(s) | 82, 117, 129, 303 |
| BsiHKCI | CYCGRG | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 89, 124, 299 |
| BsnI | GGCC | 4 cut(s) | 82, 117, 129, 303 |
| BsoBI | CYCGRG | 1 cut(s) | 124 |
| Bsp1407I | TGTACA | 1 cut(s) | 267 |
| Bsp143I | GATC | 2 cut(s) | 332, 385 |
| BspANI | GGCC | 4 cut(s) | 82, 117, 129, 303 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspLI | GGNNCC | 1 cut(s) | 387 |
| BspMAI | CTGCAG | 1 cut(s) | 80 |
| BspPI | GGATC | 2 cut(s) | 380, 393 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrGI | TGTACA | 1 cut(s) | 267 |
| BssECI | CCNNGG | 1 cut(s) | 124 |
| BssMI | GATC | 2 cut(s) | 332, 385 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 2 cut(s) | 135, 254 |
| BstAUI | TGTACA | 1 cut(s) | 267 |
| BstC8I | GCNNGC | 2 cut(s) | 52, 80 |
| BstDEI | CTNAG | 1 cut(s) | 195 |
| BstF5I | GGATG | 7 cut(s) | 16, 76, 103, 174, 289, 328, 373 |
| BstKTI | GATC | 2 cut(s) | 335, 388 |
| BstMBI | GATC | 2 cut(s) | 332, 385 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 60 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstSCI | CCNGG | 3 cut(s) | 123, 124, 292 |
| BstSFI | CTRYAG | 2 cut(s) | 76, 189 |
| BstV1I | GCAGC | 5 cut(s) | 59, 62, 338, 388, 391 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 396 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BsuRI | GGCC | 4 cut(s) | 82, 117, 129, 303 |
| BtsCI | GGATG | 7 cut(s) | 16, 76, 103, 174, 289, 328, 373 |
| BtsI | GCAGTG | 1 cut(s) | 407 |
| BtsIMutI | CAGTG | 2 cut(s) | 250, 407 |
| Cac8I | GCNNGC | 2 cut(s) | 52, 80 |
| CaiI | CAGNNNCTG | 1 cut(s) | 382 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 127 |
| Cfr9I | CCCGGG | 1 cut(s) | 124 |
| Csp6I | GTAC | 2 cut(s) | 268, 339 |
| CviAII | CATG | 1 cut(s) | 396 |
| CviQI | GTAC | 2 cut(s) | 268, 339 |
| DdeI | CTNAG | 1 cut(s) | 195 |
| DpnI | GATC | 2 cut(s) | 334, 387 |
| DpnII | GATC | 2 cut(s) | 332, 385 |
| Eco147I | AGGCCT | 2 cut(s) | 82, 303 |
| Eco88I | CYCGRG | 1 cut(s) | 124 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| FaeI | CATG | 1 cut(s) | 399 |
| FaiI | YATR | 9 cut(s) | 36, 139, 186, 191, 264, 266, 363, 365, 397 |
| FatI | CATG | 1 cut(s) | 395 |
| FauNDI | CATATG | 2 cut(s) | 264, 363 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 76, 327, 377, 380 |
| FokI | GGATG | 7 cut(s) | 23, 83, 110, 181, 276, 335, 380 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 76, 327, 377, 380 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GluI | GCNGC | 5 cut(s) | 48, 76, 327, 377, 380 |
| HaeIII | GGCC | 4 cut(s) | 82, 117, 129, 303 |
| HapII | CCGG | 1 cut(s) | 125 |
| Hin1II | CATG | 1 cut(s) | 399 |
| HinfI | GANTC | 1 cut(s) | 418 |
| HpaII | CCGG | 1 cut(s) | 125 |
| Hpy188III | TCNNGA | 1 cut(s) | 410 |
| HpyAV | CCTTC | 3 cut(s) | 52, 61, 293 |
| HpyCH4III | ACNGT | 2 cut(s) | 135, 254 |
| HpyCH4V | TGCA | 6 cut(s) | 54, 78, 158, 215, 326, 376 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 60 |
| HpyF3I | CTNAG | 1 cut(s) | 195 |
| Hsp92II | CATG | 1 cut(s) | 399 |
| Kzo9I | GATC | 2 cut(s) | 332, 385 |
| LpnPI | CCDG | 7 cut(s) | 49, 64, 138, 279, 306, 317, 368 |
| Lsp1109I | GCAGC | 5 cut(s) | 59, 62, 338, 388, 391 |
| LweI | GCATC | 4 cut(s) | 145, 298, 313, 363 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MalI | GATC | 2 cut(s) | 334, 387 |
| MboI | GATC | 2 cut(s) | 332, 385 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MluCI | AATT | 1 cut(s) | 87 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 2 cut(s) | 9, 12 |
| MseI | TTAA | 2 cut(s) | 86, 111 |
| MslI | CAYNNNNRTG | 3 cut(s) | 366, 394, 400 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MspI | CCGG | 1 cut(s) | 125 |
| MspR9I | CCNGG | 3 cut(s) | 125, 126, 294 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 60 |
| NciI | CCSGG | 2 cut(s) | 125, 126 |
| NdeI | CATATG | 2 cut(s) | 264, 363 |
| NdeII | GATC | 2 cut(s) | 332, 385 |
| NlaIII | CATG | 1 cut(s) | 399 |
| NlaIV | GGNNCC | 1 cut(s) | 387 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| PceI | AGGCCT | 2 cut(s) | 82, 303 |
| PfeI | GAWTC | 1 cut(s) | 418 |
| PfoI | TCCNGGA | 1 cut(s) | 292 |
| PkrI | GCNGC | 5 cut(s) | 49, 77, 328, 378, 381 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 1 cut(s) | 387 |
| PspPI | GGNCC | 2 cut(s) | 115, 127 |
| PstI | CTGCAG | 1 cut(s) | 80 |
| PstNI | CAGNNNCTG | 1 cut(s) | 382 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| PvuII | CAGCTG | 1 cut(s) | 382 |
| RsaI | GTAC | 2 cut(s) | 269, 340 |
| RsaNI | GTAC | 2 cut(s) | 268, 339 |
| RseI | CAYNNNNRTG | 3 cut(s) | 366, 394, 400 |
| SaqAI | TTAA | 2 cut(s) | 86, 111 |
| SatI | GCNGC | 5 cut(s) | 48, 76, 327, 377, 380 |
| Sau3AI | GATC | 2 cut(s) | 332, 385 |
| Sau96I | GGNCC | 2 cut(s) | 115, 127 |
| ScrFI | CCNGG | 3 cut(s) | 125, 126, 294 |
| SetI | ASST | 6 cut(s) | 23, 52, 196, 315, 384, 427 |
| SfaNI | GCATC | 4 cut(s) | 145, 298, 313, 363 |
| SfcI | CTRYAG | 2 cut(s) | 76, 189 |
| SmaI | CCCGGG | 1 cut(s) | 126 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 366, 394, 400 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SseBI | AGGCCT | 2 cut(s) | 82, 303 |
| SspMI | CTAG | 1 cut(s) | 314 |
| StuI | AGGCCT | 2 cut(s) | 82, 303 |
| StyD4I | CCNGG | 3 cut(s) | 123, 124, 292 |
| TaaI | ACNGT | 2 cut(s) | 135, 254 |
| TasI | AATT | 1 cut(s) | 87 |
| TatI | WGTACW | 2 cut(s) | 267, 338 |
| TfiI | GAWTC | 1 cut(s) | 418 |
| Tru1I | TTAA | 2 cut(s) | 86, 111 |
| Tru9I | TTAA | 2 cut(s) | 86, 111 |
| TscAI | CASTG | 2 cut(s) | 257, 407 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 5 cut(s) | 47, 75, 326, 376, 379 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspMI | CCCGGG | 1 cut(s) | 124 |
| TspRI | CASTG | 2 cut(s) | 257, 407 |
| XmaI | CCCGGG | 1 cut(s) | 124 |
| XspI | CTAG | 1 cut(s) | 314 |