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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 209 |
| AcuI | CTGAAG | 2 cut(s) | 77, 340 |
| AgsI | TTSAA | 5 cut(s) | 26, 529, 580, 733, 823 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 307, 366 |
| AhlI | ACTAGT | 1 cut(s) | 533 |
| AjnI | CCWGG | 3 cut(s) | 76, 175, 364 |
| AluBI | AGCT | 4 cut(s) | 20, 170, 476, 599 |
| AluI | AGCT | 4 cut(s) | 20, 170, 476, 599 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| Alw26I | GTCTC | 2 cut(s) | 382, 597 |
| AlwI | GGATC | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 497 |
| ApeKI | GCWGC | 1 cut(s) | 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 1 cut(s) | 268 |
| BanII | GRGCYC | 2 cut(s) | 87, 172 |
| BauI | CACGAG | 1 cut(s) | 838 |
| BbsI | GAAGAC | 1 cut(s) | 775 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 391 |
| BccI | CCATC | 2 cut(s) | 143, 439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 482, 516 |
| BciT130I | CCWGG | 3 cut(s) | 78, 177, 366 |
| BclI | TGATCA | 1 cut(s) | 258 |
| BcoDI | GTCTC | 2 cut(s) | 382, 597 |
| BcuI | ACTAGT | 1 cut(s) | 533 |
| BfaI | CTAG | 7 cut(s) | 216, 411, 468, 534, 600, 626, 701 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 405 |
| BlpI | GCTNAGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 406 |
| Bme1390I | CCNGG | 3 cut(s) | 78, 177, 366 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 307, 366 |
| BmrFI | CCNGG | 3 cut(s) | 78, 177, 366 |
| BmsI | GCATC | 3 cut(s) | 196, 349, 759 |
| BpiI | GAAGAC | 1 cut(s) | 775 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 318 |
| Bsa29I | ATCGAT | 1 cut(s) | 204 |
| BsaJI | CCNNGG | 2 cut(s) | 127, 428 |
| Bse3DI | GCAATG | 2 cut(s) | 106, 121 |
| BseBI | CCWGG | 3 cut(s) | 78, 177, 366 |
| BseCI | ATCGAT | 1 cut(s) | 204 |
| BseDI | CCNNGG | 2 cut(s) | 127, 428 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMI | GCAATG | 2 cut(s) | 106, 121 |
| BseMII | CTCAG | 2 cut(s) | 100, 701 |
| BseXI | GCAGC | 1 cut(s) | 391 |
| BseYI | CCCAGC | 1 cut(s) | 197 |
| BshFI | GGCC | 1 cut(s) | 499 |
| BshVI | ATCGAT | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BsmAI | GTCTC | 2 cut(s) | 382, 597 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsnI | GGCC | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 172 |
| Bsp143I | GATC | 2 cut(s) | 201, 258 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 318 |
| Bsp19I | CCATGG | 1 cut(s) | 428 |
| BspANI | GGCC | 1 cut(s) | 499 |
| BspCNI | CTCAG | 2 cut(s) | 99, 700 |
| BspDI | ATCGAT | 1 cut(s) | 204 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BsrDI | GCAATG | 2 cut(s) | 106, 121 |
| BssECI | CCNNGG | 2 cut(s) | 127, 428 |
| BssMI | GATC | 2 cut(s) | 201, 258 |
| BssSI | CACGAG | 1 cut(s) | 838 |
| BssT1I | CCWWGG | 2 cut(s) | 127, 428 |
| Bst2BI | CACGAG | 1 cut(s) | 838 |
| Bst2UI | CCWGG | 3 cut(s) | 78, 177, 366 |
| Bst4CI | ACNGT | 2 cut(s) | 193, 374 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 501 |
| BstDEI | CTNAG | 4 cut(s) | 86, 304, 318, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstKTI | GATC | 2 cut(s) | 204, 261 |
| BstMAI | GTCTC | 2 cut(s) | 382, 597 |
| BstMBI | GATC | 2 cut(s) | 201, 258 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 239, 413, 761 |
| BstNI | CCWGG | 3 cut(s) | 78, 177, 366 |
| BstNSI | RCATGY | 2 cut(s) | 223, 764 |
| BstSCI | CCNGG | 3 cut(s) | 76, 175, 364 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstV1I | GCAGC | 1 cut(s) | 391 |
| BstV2I | GAAGAC | 1 cut(s) | 775 |
| Bsu15I | ATCGAT | 1 cut(s) | 204 |
| BsuRI | GGCC | 1 cut(s) | 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 204 |
| BtgI | CCRYGG | 1 cut(s) | 428 |
| BtgZI | GCGATG | 2 cut(s) | 326, 736 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsI | GCAGTG | 1 cut(s) | 686 |
| BtsIMutI | CAGTG | 2 cut(s) | 370, 686 |
| Cac8I | GCNNGC | 1 cut(s) | 501 |
| ClaI | ATCGAT | 1 cut(s) | 204 |
| CseI | GACGC | 1 cut(s) | 107 |
| CsiI | ACCWGGT | 1 cut(s) | 364 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 380, 415 |
| CviAII | CATG | 5 cut(s) | 220, 347, 429, 747, 761 |
| DdeI | CTNAG | 4 cut(s) | 86, 304, 318, 687 |
| DpnI | GATC | 2 cut(s) | 203, 260 |
| DpnII | GATC | 2 cut(s) | 201, 258 |
| DriI | GACNNNNNGTC | 2 cut(s) | 307, 366 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 307, 366 |
| Ecl136II | GAGCTC | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 2 cut(s) | 127, 428 |
| Eco147I | AGGCCT | 1 cut(s) | 499 |
| Eco24I | GRGCYC | 2 cut(s) | 87, 172 |
| Eco53kI | GAGCTC | 1 cut(s) | 170 |
| Eco57I | CTGAAG | 2 cut(s) | 77, 340 |
| EcoICRI | GAGCTC | 1 cut(s) | 170 |
| EcoRII | CCWGG | 3 cut(s) | 76, 175, 364 |
| EcoT14I | CCWWGG | 2 cut(s) | 127, 428 |
| EcoT22I | ATGCAT | 2 cut(s) | 752, 792 |
| EcoT38I | GRGCYC | 2 cut(s) | 87, 172 |
| ErhI | CCWWGG | 2 cut(s) | 127, 428 |
| FaeI | CATG | 5 cut(s) | 223, 350, 432, 750, 764 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 5 cut(s) | 219, 346, 428, 746, 760 |
| FbaI | TGATCA | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 1 cut(s) | 405 |
| FokI | GGATG | 1 cut(s) | 159 |
| FriOI | GRGCYC | 2 cut(s) | 87, 172 |
| Fsp4HI | GCNGC | 1 cut(s) | 405 |
| FspBI | CTAG | 7 cut(s) | 216, 411, 468, 534, 600, 626, 701 |
| GluI | GCNGC | 1 cut(s) | 405 |
| GsaI | CCCAGC | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 499 |
| HgaI | GACGC | 1 cut(s) | 107 |
| Hin1II | CATG | 5 cut(s) | 223, 350, 432, 750, 764 |
| HincII | GTYRAC | 1 cut(s) | 182 |
| HindII | GTYRAC | 1 cut(s) | 182 |
| HindIII | AAGCTT | 1 cut(s) | 474 |
| HinfI | GANTC | 1 cut(s) | 685 |
| HphI | GGTGA | 1 cut(s) | 268 |
| Hpy166II | GTNNAC | 2 cut(s) | 182, 684 |
| Hpy188I | TCNGA | 3 cut(s) | 89, 595, 690 |
| Hpy188III | TCNNGA | 2 cut(s) | 358, 468 |
| Hpy8I | GTNNAC | 2 cut(s) | 182, 684 |
| HpyAV | CCTTC | 1 cut(s) | 685 |
| HpyCH4III | ACNGT | 2 cut(s) | 193, 374 |
| HpyCH4V | TGCA | 8 cut(s) | 12, 99, 350, 407, 679, 750, 790, 843 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 239, 413, 761 |
| HpyF3I | CTNAG | 4 cut(s) | 86, 304, 318, 687 |
| Hsp92II | CATG | 5 cut(s) | 223, 350, 432, 750, 764 |
| Ksp22I | TGATCA | 1 cut(s) | 258 |
| Kzo9I | GATC | 2 cut(s) | 201, 258 |
| LmnI | GCTCC | 2 cut(s) | 167, 513 |
| Lsp1109I | GCAGC | 1 cut(s) | 391 |
| LweI | GCATC | 3 cut(s) | 196, 349, 759 |
| MabI | ACCWGGT | 1 cut(s) | 364 |
| MaeI | CTAG | 7 cut(s) | 216, 411, 468, 534, 600, 626, 701 |
| MaeIII | GTNAC | 2 cut(s) | 51, 368 |
| MalI | GATC | 2 cut(s) | 203, 260 |
| MboI | GATC | 2 cut(s) | 201, 258 |
| MboII | GAAGA | 2 cut(s) | 79, 780 |
| MhlI | GDGCHC | 2 cut(s) | 87, 172 |
| MluCI | AATT | 3 cut(s) | 376, 562, 580 |
| MlyI | GAGTC | 1 cut(s) | 679 |
| MnlI | CCTC | 1 cut(s) | 292 |
| Mph1103I | ATGCAT | 2 cut(s) | 752, 792 |
| MroXI | GAANNNNTTC | 1 cut(s) | 21 |
| MseI | TTAA | 2 cut(s) | 93, 635 |
| MslI | CAYNNNNRTG | 2 cut(s) | 218, 345 |
| MspR9I | CCNGG | 3 cut(s) | 78, 177, 366 |
| MvaI | CCWGG | 3 cut(s) | 78, 177, 366 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 239, 413, 761 |
| NcoI | CCATGG | 1 cut(s) | 428 |
| NdeII | GATC | 2 cut(s) | 201, 258 |
| NlaIII | CATG | 5 cut(s) | 223, 350, 432, 750, 764 |
| NmuCI | GTSAC | 1 cut(s) | 368 |
| NsiI | ATGCAT | 2 cut(s) | 752, 792 |
| NspI | RCATGY | 2 cut(s) | 223, 764 |
| PceI | AGGCCT | 1 cut(s) | 499 |
| PdmI | GAANNNNTTC | 1 cut(s) | 21 |
| PkrI | GCNGC | 1 cut(s) | 406 |
| PleI | GAGTC | 1 cut(s) | 679 |
| PpsI | GAGTC | 1 cut(s) | 679 |
| Psp124BI | GAGCTC | 1 cut(s) | 172 |
| Psp6I | CCWGG | 3 cut(s) | 76, 175, 364 |
| PspFI | CCCAGC | 1 cut(s) | 197 |
| PspGI | CCWGG | 3 cut(s) | 76, 175, 364 |
| RseI | CAYNNNNRTG | 2 cut(s) | 218, 345 |
| SacI | GAGCTC | 1 cut(s) | 172 |
| SaqAI | TTAA | 2 cut(s) | 93, 635 |
| SatI | GCNGC | 1 cut(s) | 405 |
| Sau3AI | GATC | 2 cut(s) | 201, 258 |
| SchI | GAGTC | 1 cut(s) | 679 |
| ScrFI | CCNGG | 3 cut(s) | 78, 177, 366 |
| SduI | GDGCHC | 2 cut(s) | 87, 172 |
| SetI | ASST | 8 cut(s) | 22, 53, 172, 181, 367, 478, 601, 696 |
| SexAI | ACCWGGT | 1 cut(s) | 364 |
| SfaNI | GCATC | 3 cut(s) | 196, 349, 759 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 218, 345 |
| SpeI | ACTAGT | 1 cut(s) | 533 |
| Sse9I | AATT | 3 cut(s) | 376, 562, 580 |
| SseBI | AGGCCT | 1 cut(s) | 499 |
| SspI | AATATT | 2 cut(s) | 396, 615 |
| SspMI | CTAG | 7 cut(s) | 216, 411, 468, 534, 600, 626, 701 |
| SstI | GAGCTC | 1 cut(s) | 172 |
| StuI | AGGCCT | 1 cut(s) | 499 |
| StyD4I | CCNGG | 3 cut(s) | 76, 175, 364 |
| StyI | CCWWGG | 2 cut(s) | 127, 428 |
| TaaI | ACNGT | 2 cut(s) | 193, 374 |
| TaqI | TCGA | 1 cut(s) | 204 |
| TasI | AATT | 3 cut(s) | 376, 562, 580 |
| Tru1I | TTAA | 2 cut(s) | 93, 635 |
| Tru9I | TTAA | 2 cut(s) | 93, 635 |
| TscAI | CASTG | 2 cut(s) | 377, 686 |
| TseFI | GTSAC | 1 cut(s) | 368 |
| TseI | GCWGC | 1 cut(s) | 404 |
| Tsp45I | GTSAC | 1 cut(s) | 368 |
| TspDTI | ATGAA | 2 cut(s) | 148, 795 |
| TspRI | CASTG | 2 cut(s) | 377, 686 |
| XbaI | TCTAGA | 1 cut(s) | 467 |
| XceI | RCATGY | 2 cut(s) | 223, 764 |
| XmnI | GAANNNNTTC | 1 cut(s) | 21 |
| XspI | CTAG | 7 cut(s) | 216, 411, 468, 534, 600, 626, 701 |
| Zsp2I | ATGCAT | 2 cut(s) | 752, 792 |