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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2465 |
| Acc36I | ACCTGC | 3 cut(s) | 497, 1631, 2465 |
| Acc65I | GGTACC | 1 cut(s) | 42 |
| AccB1I | GGYRCC | 2 cut(s) | 42, 1203 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 527, 1357 |
| AccI | GTMKAC | 1 cut(s) | 2555 |
| AccIII | TCCGGA | 2 cut(s) | 733, 3086 |
| AciI | CCGC | 1 cut(s) | 1109 |
| AclWI | GGATC | 7 cut(s) | 231, 854, 937, 1552, 1565, 1727, 2130 |
| AcoI | YGGCCR | 2 cut(s) | 1957, 2491 |
| AcsI | RAATTY | 3 cut(s) | 2263, 2470, 3157 |
| AcuI | CTGAAG | 5 cut(s) | 570, 671, 1547, 1818, 2982 |
| AfaI | GTAC | 4 cut(s) | 44, 1278, 1742, 1926 |
| AflIII | ACRYGT | 1 cut(s) | 2765 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2446 |
| AjnI | CCWGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| AleI | CACNNNNGTG | 1 cut(s) | 1201 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 409, 441 |
| Alw21I | GWGCWC | 3 cut(s) | 566, 1692, 2353 |
| Alw26I | GTCTC | 4 cut(s) | 246, 661, 735, 2022 |
| Alw44I | GTGCAC | 1 cut(s) | 1688 |
| AlwI | GGATC | 7 cut(s) | 231, 854, 937, 1552, 1565, 1727, 2130 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 527, 2888 |
| Aor13HI | TCCGGA | 2 cut(s) | 733, 3086 |
| ApaLI | GTGCAC | 1 cut(s) | 1688 |
| ApeKI | GCWGC | 6 cut(s) | 524, 2270, 2434, 2504, 2879, 3007 |
| ApoI | RAATTY | 3 cut(s) | 2263, 2470, 3157 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1158, 1190, 2357, 2389 |
| AseI | ATTAAT | 1 cut(s) | 3045 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2970, 3112 |
| Asp718I | GGTACC | 1 cut(s) | 42 |
| AsuII | TTCGAA | 1 cut(s) | 1614 |
| AvaII | GGWCC | 7 cut(s) | 190, 259, 1191, 1348, 1788, 1816, 1891 |
| BaeGI | GKGCMC | 2 cut(s) | 1208, 1692 |
| BalI | TGGCCA | 2 cut(s) | 1959, 2493 |
| BamHI | GGATCC | 1 cut(s) | 1557 |
| BanI | GGYRCC | 2 cut(s) | 42, 1203 |
| BanII | GRGCYC | 1 cut(s) | 566 |
| BauI | CACGAG | 1 cut(s) | 2001 |
| Bbv12I | GWGCWC | 3 cut(s) | 566, 1692, 2353 |
| BbvCI | CCTCAGC | 1 cut(s) | 1145 |
| BbvI | GCAGC | 6 cut(s) | 511, 2257, 2446, 2491, 2866, 3019 |
| BciT130I | CCWGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| BciVI | GTATCC | 1 cut(s) | 102 |
| BclI | TGATCA | 2 cut(s) | 1257, 2929 |
| BcoDI | GTCTC | 4 cut(s) | 246, 661, 735, 2022 |
| BfaI | CTAG | 8 cut(s) | 105, 180, 450, 1295, 2106, 2298, 2361, 2724 |
| BfmI | CTRYAG | 3 cut(s) | 1710, 2458, 2880 |
| BfuAI | ACCTGC | 3 cut(s) | 497, 1631, 2465 |
| BfuI | GTATCC | 1 cut(s) | 102 |
| BisI | GCNGC | 6 cut(s) | 525, 2271, 2435, 2505, 2880, 3008 |
| BlsI | GCNGC | 6 cut(s) | 526, 2272, 2436, 2506, 2881, 3009 |
| Bme1390I | CCNGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| Bme18I | GGWCC | 7 cut(s) | 190, 259, 1191, 1348, 1788, 1816, 1891 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2446 |
| BmrFI | CCNGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| BmrI | ACTGGG | 2 cut(s) | 90, 474 |
| BmsI | GCATC | 7 cut(s) | 58, 408, 493, 2063, 2176, 2932, 3005 |
| BmuI | ACTGGG | 2 cut(s) | 90, 474 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2838 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1803, 1835, 3133, 3165 |
| BpmI | CTGGAG | 6 cut(s) | 577, 1526, 1805, 1895, 2703, 2910 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1145 |
| Bpu14I | TTCGAA | 1 cut(s) | 1614 |
| BpuEI | CTTGAG | 5 cut(s) | 552, 1233, 1828, 2375, 2976 |
| Bsa29I | ATCGAT | 1 cut(s) | 1722 |
| BsaBI | GATNNNNATC | 2 cut(s) | 858, 2928 |
| BsaI | GGTCTC | 1 cut(s) | 661 |
| BsaJI | CCNNGG | 4 cut(s) | 20, 594, 1199, 2669 |
| BsaWI | WCCGGW | 2 cut(s) | 733, 3086 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1133, 1163, 1627, 1657, 2791, 2821 |
| Bse1I | ACTGG | 9 cut(s) | 96, 117, 469, 1274, 1351, 1376, 1699, 1878, 1969 |
| Bse3DI | GCAATG | 7 cut(s) | 78, 1329, 1467, 1918, 2040, 2601, 2903 |
| Bse8I | GATNNNNATC | 2 cut(s) | 858, 2928 |
| BseAI | TCCGGA | 2 cut(s) | 733, 3086 |
| BseBI | CCWGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| BseCI | ATCGAT | 1 cut(s) | 1722 |
| BseDI | CCNNGG | 4 cut(s) | 20, 594, 1199, 2669 |
| BseJI | GATNNNNATC | 2 cut(s) | 858, 2928 |
| BseMI | GCAATG | 7 cut(s) | 78, 1329, 1467, 1918, 2040, 2601, 2903 |
| BseMII | CTCAG | 7 cut(s) | 1136, 1557, 1899, 2033, 2771, 2847, 3164 |
| BseNI | ACTGG | 9 cut(s) | 96, 117, 469, 1274, 1351, 1376, 1699, 1878, 1969 |
| BseRI | GAGGAG | 1 cut(s) | 2706 |
| BseSI | GKGCMC | 2 cut(s) | 1208, 1692 |
| BseXI | GCAGC | 6 cut(s) | 511, 2257, 2446, 2491, 2866, 3019 |
| BseYI | CCCAGC | 3 cut(s) | 262, 364, 527 |
| BsgI | GTGCAG | 4 cut(s) | 104, 1207, 2453, 3026 |
| BshNI | GGYRCC | 2 cut(s) | 42, 1203 |
| BshVI | ATCGAT | 1 cut(s) | 1722 |
| BsiHKAI | GWGCWC | 3 cut(s) | 566, 1692, 2353 |
| BsiSI | CCGG | 2 cut(s) | 734, 3087 |
| BsiWI | CGTACG | 1 cut(s) | 1924 |
| BslFI | GGGAC | 2 cut(s) | 1492, 1884 |
| BsmAI | GTCTC | 4 cut(s) | 246, 661, 735, 2022 |
| BsmFI | GGGAC | 2 cut(s) | 1492, 1884 |
| BsmI | GAATGC | 3 cut(s) | 1111, 1847, 2425 |
| Bso31I | GGTCTC | 1 cut(s) | 661 |
| Bsp119I | TTCGAA | 1 cut(s) | 1614 |
| Bsp1286I | GDGCHC | 4 cut(s) | 566, 1208, 1692, 2353 |
| Bsp13I | TCCGGA | 2 cut(s) | 733, 3086 |
| Bsp143I | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| BspACI | CCGC | 1 cut(s) | 1109 |
| BspCNI | CTCAG | 7 cut(s) | 1137, 1558, 1900, 2032, 2770, 2848, 3163 |
| BspDI | ATCGAT | 1 cut(s) | 1722 |
| BspEI | TCCGGA | 2 cut(s) | 733, 3086 |
| BspHI | TCATGA | 1 cut(s) | 2920 |
| BspMAI | CTGCAG | 3 cut(s) | 1714, 2462, 2884 |
| BspMI | ACCTGC | 3 cut(s) | 497, 1631, 2465 |
| BspPI | GGATC | 7 cut(s) | 231, 854, 937, 1552, 1565, 1727, 2130 |
| BspQI | GCTCTTC | 2 cut(s) | 1482, 2738 |
| BspT104I | TTCGAA | 1 cut(s) | 1614 |
| BspT107I | GGYRCC | 2 cut(s) | 42, 1203 |
| BspTNI | GGTCTC | 1 cut(s) | 661 |
| BsrDI | GCAATG | 7 cut(s) | 78, 1329, 1467, 1918, 2040, 2601, 2903 |
| BsrI | ACTGG | 9 cut(s) | 96, 117, 469, 1274, 1351, 1376, 1699, 1878, 1969 |
| BssECI | CCNNGG | 4 cut(s) | 20, 594, 1199, 2669 |
| BssMI | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| BssNAI | GTATAC | 1 cut(s) | 2556 |
| BssSI | CACGAG | 1 cut(s) | 2001 |
| Bst1107I | GTATAC | 1 cut(s) | 2556 |
| Bst2BI | CACGAG | 1 cut(s) | 2001 |
| Bst2UI | CCWGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| Bst4CI | ACNGT | 5 cut(s) | 412, 436, 2159, 2869, 3133 |
| Bst6I | CTCTTC | 4 cut(s) | 1001, 1482, 1837, 2738 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2431, 2504, 2612 |
| BstBI | TTCGAA | 1 cut(s) | 1614 |
| BstC8I | GCNNGC | 6 cut(s) | 522, 1122, 1881, 2091, 2095, 2401 |
| BstDEI | CTNAG | 9 cut(s) | 1145, 1566, 1908, 2019, 2182, 2274, 2757, 2856, 3150 |
| BstEII | GGTNACC | 1 cut(s) | 2840 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1656 |
| BstKTI | GATC | 9 cut(s) | 226, 862, 932, 1260, 1560, 1722, 2125, 2851, 2932 |
| BstMAI | GTCTC | 4 cut(s) | 246, 661, 735, 2022 |
| BstMBI | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 387, 1445, 1734, 2431, 2504, 2612 |
| BstNI | CCWGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| BstNSI | RCATGY | 3 cut(s) | 1124, 1741, 2769 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2838 |
| BstPI | GGTNACC | 1 cut(s) | 2840 |
| BstSCI | CCNGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| BstSFI | CTRYAG | 3 cut(s) | 1710, 2458, 2880 |
| BstSLI | GKGCMC | 2 cut(s) | 1208, 1692 |
| BstV1I | GCAGC | 6 cut(s) | 511, 2257, 2446, 2491, 2866, 3019 |
| BstX2I | RGATCY | 2 cut(s) | 223, 1557 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 353, 377 |
| BstYI | RGATCY | 2 cut(s) | 223, 1557 |
| BstZ17I | GTATAC | 1 cut(s) | 2556 |
| Bsu15I | ATCGAT | 1 cut(s) | 1722 |
| BsuI | GTATCC | 1 cut(s) | 102 |
| BsuTUI | ATCGAT | 1 cut(s) | 1722 |
| BtsI | GCAGTG | 2 cut(s) | 1312, 2001 |
| BtsIMutI | CAGTG | 8 cut(s) | 441, 647, 1312, 1842, 1962, 2001, 2164, 2234 |
| BveI | ACCTGC | 3 cut(s) | 497, 1631, 2465 |
| Cac8I | GCNNGC | 6 cut(s) | 522, 1122, 1881, 2091, 2095, 2401 |
| CaiI | CAGNNNCTG | 2 cut(s) | 527, 2888 |
| CciI | TCATGA | 1 cut(s) | 2920 |
| ClaI | ATCGAT | 1 cut(s) | 1722 |
| CsiI | ACCWGGT | 2 cut(s) | 1790, 2701 |
| Csp6I | GTAC | 4 cut(s) | 43, 1277, 1741, 1925 |
| CviQI | GTAC | 4 cut(s) | 43, 1277, 1741, 1925 |
| DdeI | CTNAG | 9 cut(s) | 1145, 1566, 1908, 2019, 2182, 2274, 2757, 2856, 3150 |
| DpnI | GATC | 9 cut(s) | 225, 861, 931, 1259, 1559, 1721, 2124, 2850, 2931 |
| DpnII | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| DraI | TTTAAA | 3 cut(s) | 1594, 1680, 1977 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2446 |
| EaeI | YGGCCR | 2 cut(s) | 1957, 2491 |
| Eam1104I | CTCTTC | 4 cut(s) | 1001, 1482, 1837, 2738 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2446 |
| EarI | CTCTTC | 4 cut(s) | 1001, 1482, 1837, 2738 |
| Ecl136II | GAGCTC | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 1 cut(s) | 566 |
| Eco31I | GGTCTC | 1 cut(s) | 661 |
| Eco32I | GATATC | 1 cut(s) | 534 |
| Eco47I | GGWCC | 7 cut(s) | 190, 259, 1191, 1348, 1788, 1816, 1891 |
| Eco53kI | GAGCTC | 1 cut(s) | 564 |
| Eco57I | CTGAAG | 5 cut(s) | 570, 671, 1547, 1818, 2982 |
| Eco91I | GGTNACC | 1 cut(s) | 2840 |
| EcoICRI | GAGCTC | 1 cut(s) | 564 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1656 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1191, 1816, 1891, 2294, 3092 |
| EcoO65I | GGTNACC | 1 cut(s) | 2840 |
| EcoRI | GAATTC | 1 cut(s) | 2263 |
| EcoRII | CCWGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| EcoRV | GATATC | 1 cut(s) | 534 |
| EcoT22I | ATGCAT | 3 cut(s) | 423, 1849, 2986 |
| EcoT38I | GRGCYC | 1 cut(s) | 566 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1768, 1800, 1880, 1912, 2165, 2197 |
| FaqI | GGGAC | 2 cut(s) | 1492, 1884 |
| FauNDI | CATATG | 2 cut(s) | 1483, 2581 |
| FbaI | TGATCA | 2 cut(s) | 1257, 2929 |
| FblI | GTMKAC | 1 cut(s) | 2555 |
| Fnu4HI | GCNGC | 6 cut(s) | 525, 2271, 2435, 2505, 2880, 3008 |
| FriOI | GRGCYC | 1 cut(s) | 566 |
| Fsp4HI | GCNGC | 6 cut(s) | 525, 2271, 2435, 2505, 2880, 3008 |
| FspBI | CTAG | 8 cut(s) | 105, 180, 450, 1295, 2106, 2298, 2361, 2724 |
| GluI | GCNGC | 6 cut(s) | 525, 2271, 2435, 2505, 2880, 3008 |
| GsaI | CCCAGC | 3 cut(s) | 266, 368, 531 |
| GsuI | CTGGAG | 6 cut(s) | 577, 1526, 1805, 1895, 2703, 2910 |
| HapII | CCGG | 2 cut(s) | 734, 3087 |
| HincII | GTYRAC | 4 cut(s) | 405, 835, 2083, 3034 |
| HindII | GTYRAC | 4 cut(s) | 405, 835, 2083, 3034 |
| HindIII | AAGCTT | 1 cut(s) | 1617 |
| HpaI | GTTAAC | 1 cut(s) | 405 |
| HpaII | CCGG | 2 cut(s) | 734, 3087 |
| HpyCH4III | ACNGT | 5 cut(s) | 412, 436, 2159, 2869, 3133 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 387, 1445, 1734, 2431, 2504, 2612 |
| HpyF3I | CTNAG | 9 cut(s) | 1145, 1566, 1908, 2019, 2182, 2274, 2757, 2856, 3150 |
| Kpn2I | TCCGGA | 2 cut(s) | 733, 3086 |
| KpnI | GGTACC | 1 cut(s) | 46 |
| Ksp22I | TGATCA | 2 cut(s) | 1257, 2929 |
| KspAI | GTTAAC | 1 cut(s) | 405 |
| Kzo9I | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| LguI | GCTCTTC | 2 cut(s) | 1482, 2738 |
| LmnI | GCTCC | 5 cut(s) | 544, 1141, 1876, 2334, 2526 |
| Lsp1109I | GCAGC | 6 cut(s) | 511, 2257, 2446, 2491, 2866, 3019 |
| LweI | GCATC | 7 cut(s) | 58, 408, 493, 2063, 2176, 2932, 3005 |
| MabI | ACCWGGT | 2 cut(s) | 1790, 2701 |
| MaeI | CTAG | 8 cut(s) | 105, 180, 450, 1295, 2106, 2298, 2361, 2724 |
| MalI | GATC | 9 cut(s) | 225, 861, 931, 1259, 1559, 1721, 2124, 2850, 2931 |
| MboI | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| MfeI | CAATTG | 3 cut(s) | 240, 1758, 2499 |
| MflI | RGATCY | 2 cut(s) | 223, 1557 |
| MhlI | GDGCHC | 4 cut(s) | 566, 1208, 1692, 2353 |
| MlsI | TGGCCA | 2 cut(s) | 1959, 2493 |
| MluNI | TGGCCA | 2 cut(s) | 1959, 2493 |
| MlyI | GAGTC | 4 cut(s) | 764, 2171, 2366, 2428 |
| MmeI | TCCRAC | 4 cut(s) | 147, 630, 795, 3145 |
| Mox20I | TGGCCA | 2 cut(s) | 1959, 2493 |
| Mph1103I | ATGCAT | 3 cut(s) | 423, 1849, 2986 |
| MroI | TCCGGA | 2 cut(s) | 733, 3086 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2970, 3112 |
| MscI | TGGCCA | 2 cut(s) | 1959, 2493 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1201, 2925 |
| Msp20I | TGGCCA | 2 cut(s) | 1959, 2493 |
| MspA1I | CMGCKG | 2 cut(s) | 524, 2437 |
| MspI | CCGG | 2 cut(s) | 734, 3087 |
| MspR9I | CCNGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| MunI | CAATTG | 3 cut(s) | 240, 1758, 2499 |
| Mva1269I | GAATGC | 3 cut(s) | 1111, 1847, 2425 |
| MvaI | CCWGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 387, 1445, 1734, 2431, 2504, 2612 |
| NdeI | CATATG | 2 cut(s) | 1483, 2581 |
| NdeII | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| NsiI | ATGCAT | 3 cut(s) | 423, 1849, 2986 |
| NspI | RCATGY | 3 cut(s) | 1124, 1741, 2769 |
| NspV | TTCGAA | 1 cut(s) | 1614 |
| OliI | CACNNNNGTG | 1 cut(s) | 1201 |
| PaeI | GCATGC | 1 cut(s) | 1124 |
| PagI | TCATGA | 1 cut(s) | 2920 |
| PaqCI | CACCTGC | 1 cut(s) | 2465 |
| PciI | ACATGT | 1 cut(s) | 2765 |
| PciSI | GCTCTTC | 2 cut(s) | 1482, 2738 |
| PctI | GAATGC | 3 cut(s) | 1111, 1847, 2425 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2970, 3112 |
| PfeI | GAWTC | 7 cut(s) | 16, 764, 1386, 1781, 2629, 2966, 3083 |
| Pfl23II | CGTACG | 1 cut(s) | 1924 |
| PflFI | GACNNNGTC | 3 cut(s) | 436, 1172, 3029 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 527, 1357 |
| PfoI | TCCNGGA | 1 cut(s) | 1540 |
| PkrI | GCNGC | 6 cut(s) | 526, 2272, 2436, 2506, 2881, 3009 |
| PleI | GAGTC | 4 cut(s) | 763, 2170, 2365, 2427 |
| PpsI | GAGTC | 4 cut(s) | 763, 2170, 2365, 2427 |
| PpuMI | RGGWCCY | 3 cut(s) | 1191, 1816, 1891 |
| PscI | ACATGT | 1 cut(s) | 2765 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2838 |
| PshBI | ATTAAT | 1 cut(s) | 3045 |
| Psp124BI | GAGCTC | 1 cut(s) | 566 |
| Psp5II | RGGWCCY | 3 cut(s) | 1191, 1816, 1891 |
| Psp6I | CCWGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| PspEI | GGTNACC | 1 cut(s) | 2840 |
| PspFI | CCCAGC | 3 cut(s) | 262, 364, 527 |
| PspGI | CCWGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| PspLI | CGTACG | 1 cut(s) | 1924 |
| PspPPI | RGGWCCY | 3 cut(s) | 1191, 1816, 1891 |
| PstI | CTGCAG | 3 cut(s) | 1714, 2462, 2884 |
| PstNI | CAGNNNCTG | 2 cut(s) | 527, 2888 |
| PsuI | RGATCY | 2 cut(s) | 223, 1557 |
| PsyI | GACNNNGTC | 3 cut(s) | 436, 1172, 3029 |
| PvuII | CAGCTG | 2 cut(s) | 524, 2437 |
| RsaI | GTAC | 4 cut(s) | 44, 1278, 1742, 1926 |
| RsaNI | GTAC | 4 cut(s) | 43, 1277, 1741, 1925 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1201, 2925 |
| SacI | GAGCTC | 1 cut(s) | 566 |
| SapI | GCTCTTC | 2 cut(s) | 1482, 2738 |
| SatI | GCNGC | 6 cut(s) | 525, 2271, 2435, 2505, 2880, 3008 |
| Sau3AI | GATC | 9 cut(s) | 223, 859, 929, 1257, 1557, 1719, 2122, 2848, 2929 |
| SchI | GAGTC | 4 cut(s) | 764, 2171, 2366, 2428 |
| ScrFI | CCNGG | 9 cut(s) | 21, 595, 1200, 1542, 1792, 2531, 2670, 2703, 2889 |
| SduI | GDGCHC | 4 cut(s) | 566, 1208, 1692, 2353 |
| SexAI | ACCWGGT | 2 cut(s) | 1790, 2701 |
| SfaNI | GCATC | 7 cut(s) | 58, 408, 493, 2063, 2176, 2932, 3005 |
| SfcI | CTRYAG | 3 cut(s) | 1710, 2458, 2880 |
| SfuI | TTCGAA | 1 cut(s) | 1614 |
| SinI | GGWCC | 7 cut(s) | 190, 259, 1191, 1348, 1788, 1816, 1891 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1201, 2925 |
| SmlI | CTYRAG | 5 cut(s) | 567, 1248, 1807, 2354, 2991 |
| SmoI | CTYRAG | 5 cut(s) | 567, 1248, 1807, 2354, 2991 |
| SphI | GCATGC | 1 cut(s) | 1124 |
| SsiI | CCGC | 1 cut(s) | 1109 |
| SspI | AATATT | 2 cut(s) | 3043, 3079 |
| SspMI | CTAG | 8 cut(s) | 105, 180, 450, 1295, 2106, 2298, 2361, 2724 |
| SstI | GAGCTC | 1 cut(s) | 566 |
| StyD4I | CCNGG | 9 cut(s) | 19, 593, 1198, 1540, 1790, 2529, 2668, 2701, 2887 |
| TaaI | ACNGT | 5 cut(s) | 412, 436, 2159, 2869, 3133 |
| TaqI | TCGA | 4 cut(s) | 1091, 1614, 1722, 2741 |
| TatI | WGTACW | 1 cut(s) | 1276 |
| TfiI | GAWTC | 7 cut(s) | 16, 764, 1386, 1781, 2629, 2966, 3083 |
| TscAI | CASTG | 8 cut(s) | 441, 654, 1319, 1842, 1969, 2001, 2164, 2241 |
| TseI | GCWGC | 6 cut(s) | 524, 2270, 2434, 2504, 2879, 3007 |
| TspGWI | ACGGA | 1 cut(s) | 157 |
| TspRI | CASTG | 8 cut(s) | 441, 654, 1319, 1842, 1969, 2001, 2164, 2241 |
| Tth111I | GACNNNGTC | 3 cut(s) | 436, 1172, 3029 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 527, 1357 |
| VneI | GTGCAC | 1 cut(s) | 1688 |
| VpaK11BI | GGWCC | 7 cut(s) | 190, 259, 1191, 1348, 1788, 1816, 1891 |
| VspI | ATTAAT | 1 cut(s) | 3045 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1656 |
| XapI | RAATTY | 3 cut(s) | 2263, 2470, 3157 |
| XceI | RCATGY | 3 cut(s) | 1124, 1741, 2769 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2097 |
| XmiI | GTMKAC | 1 cut(s) | 2555 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2970, 3112 |
| XspI | CTAG | 8 cut(s) | 105, 180, 450, 1295, 2106, 2298, 2361, 2724 |
| Zsp2I | ATGCAT | 3 cut(s) | 423, 1849, 2986 |