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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 8 |
| AccI | GTMKAC | 1 cut(s) | 685 |
| AccIII | TCCGGA | 1 cut(s) | 322 |
| AclWI | GGATC | 4 cut(s) | 407, 1066, 1085, 1098 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcsI | RAATTY | 1 cut(s) | 134 |
| AfaI | GTAC | 1 cut(s) | 1103 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 695 |
| AgsI | TTSAA | 9 cut(s) | 88, 149, 266, 279, 631, 673, 926, 998, 1012 |
| AjnI | CCWGG | 1 cut(s) | 571 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 918, 950 |
| AluBI | AGCT | 5 cut(s) | 164, 491, 556, 875, 991 |
| AluI | AGCT | 5 cut(s) | 164, 491, 556, 875, 991 |
| Alw21I | GWGCWC | 1 cut(s) | 370 |
| AlwI | GGATC | 4 cut(s) | 407, 1066, 1085, 1098 |
| Aor13HI | TCCGGA | 1 cut(s) | 322 |
| AoxI | GGCC | 3 cut(s) | 37, 246, 733 |
| ApeKI | GCWGC | 3 cut(s) | 161, 619, 875 |
| ApoI | RAATTY | 1 cut(s) | 134 |
| AspS9I | GGNCC | 3 cut(s) | 38, 882, 975 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| AvaII | GGWCC | 2 cut(s) | 882, 975 |
| AxyI | CCTNAGG | 1 cut(s) | 209 |
| BalI | TGGCCA | 1 cut(s) | 735 |
| BamHI | GGATCC | 1 cut(s) | 1090 |
| BanI | GGYRCC | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 317 |
| Bbv12I | GWGCWC | 1 cut(s) | 370 |
| BbvI | GCAGC | 3 cut(s) | 173, 631, 862 |
| BccI | CCATC | 5 cut(s) | 20, 50, 182, 671, 698 |
| BceAI | ACGGC | 1 cut(s) | 762 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1023, 1057 |
| BciT130I | CCWGG | 1 cut(s) | 573 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BfaI | CTAG | 4 cut(s) | 225, 339, 836, 1097 |
| BisI | GCNGC | 3 cut(s) | 162, 620, 876 |
| BlsI | GCNGC | 3 cut(s) | 163, 621, 877 |
| Bme1390I | CCNGG | 1 cut(s) | 573 |
| Bme18I | GGWCC | 2 cut(s) | 882, 975 |
| BmgT120I | GGNCC | 3 cut(s) | 38, 882, 975 |
| BmiI | GGNNCC | 4 cut(s) | 10, 40, 833, 1092 |
| BmrFI | CCNGG | 1 cut(s) | 573 |
| BmsI | GCATC | 3 cut(s) | 751, 808, 1049 |
| BpiI | GAAGAC | 1 cut(s) | 317 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 897, 929 |
| Bsa29I | ATCGAT | 2 cut(s) | 15, 585 |
| BsaJI | CCNNGG | 2 cut(s) | 571, 795 |
| BsaWI | WCCGGW | 1 cut(s) | 322 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 695 |
| Bse1I | ACTGG | 2 cut(s) | 623, 736 |
| Bse21I | CCTNAGG | 1 cut(s) | 209 |
| Bse3DI | GCAATG | 1 cut(s) | 783 |
| BseAI | TCCGGA | 1 cut(s) | 322 |
| BseBI | CCWGG | 1 cut(s) | 573 |
| BseCI | ATCGAT | 2 cut(s) | 15, 585 |
| BseDI | CCNNGG | 2 cut(s) | 571, 795 |
| BseGI | GGATG | 4 cut(s) | 135, 193, 766, 859 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BseMI | GCAATG | 1 cut(s) | 783 |
| BseNI | ACTGG | 2 cut(s) | 623, 736 |
| BseXI | GCAGC | 3 cut(s) | 173, 631, 862 |
| BshFI | GGCC | 3 cut(s) | 39, 248, 735 |
| BshNI | GGYRCC | 1 cut(s) | 8 |
| BshVI | ATCGAT | 2 cut(s) | 15, 585 |
| BsiHKAI | GWGCWC | 1 cut(s) | 370 |
| BsiSI | CCGG | 1 cut(s) | 323 |
| BsiWI | CGTACG | 1 cut(s) | 1101 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BsnI | GGCC | 3 cut(s) | 39, 248, 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 370 |
| Bsp13I | TCCGGA | 1 cut(s) | 322 |
| Bsp143I | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| Bsp19I | CCATGG | 1 cut(s) | 795 |
| BspANI | GGCC | 3 cut(s) | 39, 248, 735 |
| BspDI | ATCGAT | 2 cut(s) | 15, 585 |
| BspEI | TCCGGA | 1 cut(s) | 322 |
| BspHI | TCATGA | 1 cut(s) | 1077 |
| BspLI | GGNNCC | 4 cut(s) | 10, 40, 833, 1092 |
| BspPI | GGATC | 4 cut(s) | 407, 1066, 1085, 1098 |
| BspT107I | GGYRCC | 1 cut(s) | 8 |
| BsrDI | GCAATG | 1 cut(s) | 783 |
| BsrI | ACTGG | 2 cut(s) | 623, 736 |
| BssECI | CCNNGG | 2 cut(s) | 571, 795 |
| BssMI | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| BssT1I | CCWWGG | 1 cut(s) | 795 |
| Bst2UI | CCWGG | 1 cut(s) | 573 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 257 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 2 cut(s) | 658, 1123 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstDSI | CCRYGG | 1 cut(s) | 795 |
| BstF5I | GGATG | 4 cut(s) | 135, 193, 766, 859 |
| BstKTI | GATC | 8 cut(s) | 220, 402, 508, 566, 949, 1018, 1074, 1093 |
| BstMBI | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 476 |
| BstNI | CCWGG | 1 cut(s) | 573 |
| BstNSI | RCATGY | 2 cut(s) | 660, 1032 |
| BstSCI | CCNGG | 1 cut(s) | 571 |
| BstV1I | GCAGC | 3 cut(s) | 173, 631, 862 |
| BstV2I | GAAGAC | 1 cut(s) | 317 |
| BstX2I | RGATCY | 1 cut(s) | 1090 |
| BstYI | RGATCY | 1 cut(s) | 1090 |
| Bsu15I | ATCGAT | 2 cut(s) | 15, 585 |
| Bsu36I | CCTNAGG | 1 cut(s) | 209 |
| BsuRI | GGCC | 3 cut(s) | 39, 248, 735 |
| BsuTUI | ATCGAT | 2 cut(s) | 15, 585 |
| BtgI | CCRYGG | 1 cut(s) | 795 |
| BtsCI | GGATG | 4 cut(s) | 135, 193, 766, 859 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| Cac8I | GCNNGC | 2 cut(s) | 658, 1123 |
| CciI | TCATGA | 1 cut(s) | 1077 |
| Cfr13I | GGNCC | 3 cut(s) | 38, 882, 975 |
| ClaI | ATCGAT | 2 cut(s) | 15, 585 |
| Csp6I | GTAC | 1 cut(s) | 1102 |
| CviAII | CATG | 9 cut(s) | 290, 333, 358, 657, 796, 879, 1029, 1078, 1087 |
| CviQI | GTAC | 1 cut(s) | 1102 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 8 cut(s) | 219, 401, 507, 565, 948, 1017, 1073, 1092 |
| DpnII | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 1 cut(s) | 795 |
| Eco47I | GGWCC | 2 cut(s) | 882, 975 |
| Eco81I | CCTNAGG | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 1 cut(s) | 795 |
| ErhI | CCWWGG | 1 cut(s) | 795 |
| FaeI | CATG | 9 cut(s) | 293, 336, 361, 660, 799, 882, 1032, 1081, 1090 |
| FatI | CATG | 9 cut(s) | 289, 332, 357, 656, 795, 878, 1028, 1077, 1086 |
| FauNDI | CATATG | 1 cut(s) | 790 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| FblI | GTMKAC | 1 cut(s) | 685 |
| Fnu4HI | GCNGC | 3 cut(s) | 162, 620, 876 |
| FokI | GGATG | 4 cut(s) | 142, 200, 773, 866 |
| Fsp4HI | GCNGC | 3 cut(s) | 162, 620, 876 |
| FspBI | CTAG | 4 cut(s) | 225, 339, 836, 1097 |
| GluI | GCNGC | 3 cut(s) | 162, 620, 876 |
| HaeIII | GGCC | 3 cut(s) | 39, 248, 735 |
| HapII | CCGG | 1 cut(s) | 323 |
| Hin1II | CATG | 9 cut(s) | 293, 336, 361, 660, 799, 882, 1032, 1081, 1090 |
| HinfI | GANTC | 3 cut(s) | 17, 109, 180 |
| HpaII | CCGG | 1 cut(s) | 323 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 2 cut(s) | 686, 859 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 55 |
| Hpy188III | TCNNGA | 4 cut(s) | 323, 611, 631, 1078 |
| Hpy8I | GTNNAC | 2 cut(s) | 686, 859 |
| HpyAV | CCTTC | 3 cut(s) | 191, 439, 895 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 257 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 476 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| Hsp92II | CATG | 9 cut(s) | 293, 336, 361, 660, 799, 882, 1032, 1081, 1090 |
| Kpn2I | TCCGGA | 1 cut(s) | 322 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| Kzo9I | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| LmnI | GCTCC | 2 cut(s) | 653, 918 |
| Lsp1109I | GCAGC | 3 cut(s) | 173, 631, 862 |
| LweI | GCATC | 3 cut(s) | 751, 808, 1049 |
| MaeI | CTAG | 4 cut(s) | 225, 339, 836, 1097 |
| MaeIII | GTNAC | 2 cut(s) | 596, 893 |
| MalI | GATC | 8 cut(s) | 219, 401, 507, 565, 948, 1017, 1073, 1092 |
| MboI | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| MboII | GAAGA | 4 cut(s) | 77, 118, 322, 1093 |
| MfeI | CAATTG | 2 cut(s) | 415, 1019 |
| MflI | RGATCY | 1 cut(s) | 1090 |
| MhlI | GDGCHC | 1 cut(s) | 370 |
| MlsI | TGGCCA | 1 cut(s) | 735 |
| MluCI | AATT | 7 cut(s) | 49, 134, 352, 415, 592, 803, 1019 |
| MluNI | TGGCCA | 1 cut(s) | 735 |
| MnlI | CCTC | 9 cut(s) | 55, 61, 168, 225, 286, 899, 957, 1085, 1104 |
| Mox20I | TGGCCA | 1 cut(s) | 735 |
| MroI | TCCGGA | 1 cut(s) | 322 |
| MscI | TGGCCA | 1 cut(s) | 735 |
| MseI | TTAA | 3 cut(s) | 407, 984, 1062 |
| Msp20I | TGGCCA | 1 cut(s) | 735 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 323 |
| MspR9I | CCNGG | 1 cut(s) | 573 |
| MunI | CAATTG | 2 cut(s) | 415, 1019 |
| MvaI | CCWGG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 476 |
| NcoI | CCATGG | 1 cut(s) | 795 |
| NdeI | CATATG | 1 cut(s) | 790 |
| NdeII | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| NlaIII | CATG | 9 cut(s) | 293, 336, 361, 660, 799, 882, 1032, 1081, 1090 |
| NlaIV | GGNNCC | 4 cut(s) | 10, 40, 833, 1092 |
| NmuCI | GTSAC | 2 cut(s) | 596, 893 |
| NspI | RCATGY | 2 cut(s) | 660, 1032 |
| PaeI | GCATGC | 1 cut(s) | 660 |
| PagI | TCATGA | 1 cut(s) | 1077 |
| PfeI | GAWTC | 3 cut(s) | 17, 109, 180 |
| Pfl23II | CGTACG | 1 cut(s) | 1101 |
| PflFI | GACNNNGTC | 1 cut(s) | 1048 |
| PkrI | GCNGC | 3 cut(s) | 163, 621, 877 |
| Psp6I | CCWGG | 1 cut(s) | 571 |
| PspGI | CCWGG | 1 cut(s) | 571 |
| PspLI | CGTACG | 1 cut(s) | 1101 |
| PspN4I | GGNNCC | 4 cut(s) | 10, 40, 833, 1092 |
| PspPI | GGNCC | 3 cut(s) | 38, 882, 975 |
| PsuI | RGATCY | 1 cut(s) | 1090 |
| PsyI | GACNNNGTC | 1 cut(s) | 1048 |
| PvuII | CAGCTG | 1 cut(s) | 164 |
| RsaI | GTAC | 1 cut(s) | 1103 |
| RsaNI | GTAC | 1 cut(s) | 1102 |
| SaqAI | TTAA | 3 cut(s) | 407, 984, 1062 |
| SatI | GCNGC | 3 cut(s) | 162, 620, 876 |
| Sau3AI | GATC | 8 cut(s) | 217, 399, 505, 563, 946, 1015, 1071, 1090 |
| Sau96I | GGNCC | 3 cut(s) | 38, 882, 975 |
| ScrFI | CCNGG | 1 cut(s) | 573 |
| SduI | GDGCHC | 1 cut(s) | 370 |
| SfaNI | GCATC | 3 cut(s) | 751, 808, 1049 |
| SinI | GGWCC | 2 cut(s) | 882, 975 |
| SphI | GCATGC | 1 cut(s) | 660 |
| Sse9I | AATT | 7 cut(s) | 49, 134, 352, 415, 592, 803, 1019 |
| SspI | AATATT | 2 cut(s) | 153, 270 |
| SspMI | CTAG | 4 cut(s) | 225, 339, 836, 1097 |
| StyD4I | CCNGG | 1 cut(s) | 571 |
| StyI | CCWWGG | 1 cut(s) | 795 |
| TaaI | ACNGT | 2 cut(s) | 145, 257 |
| TaqI | TCGA | 4 cut(s) | 15, 220, 585, 1043 |
| TaqII | GACCGA | 1 cut(s) | 498 |
| TasI | AATT | 7 cut(s) | 49, 134, 352, 415, 592, 803, 1019 |
| TfiI | GAWTC | 3 cut(s) | 17, 109, 180 |
| Tru1I | TTAA | 3 cut(s) | 407, 984, 1062 |
| Tru9I | TTAA | 3 cut(s) | 407, 984, 1062 |
| TscAI | CASTG | 1 cut(s) | 519 |
| TseFI | GTSAC | 2 cut(s) | 596, 893 |
| TseI | GCWGC | 3 cut(s) | 161, 619, 875 |
| Tsp45I | GTSAC | 2 cut(s) | 596, 893 |
| TspDTI | ATGAA | 8 cut(s) | 42, 119, 146, 321, 543, 605, 877, 1094 |
| TspRI | CASTG | 1 cut(s) | 519 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1048 |
| VpaK11BI | GGWCC | 2 cut(s) | 882, 975 |
| XapI | RAATTY | 1 cut(s) | 134 |
| XceI | RCATGY | 2 cut(s) | 660, 1032 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 802 |
| XmiI | GTMKAC | 1 cut(s) | 685 |
| XspI | CTAG | 4 cut(s) | 225, 339, 836, 1097 |