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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 599 |
| AccII | CGCG | 2 cut(s) | 625, 630 |
| AciI | CCGC | 3 cut(s) | 625, 636, 674 |
| AclWI | GGATC | 2 cut(s) | 410, 1225 |
| AcoI | YGGCCR | 1 cut(s) | 679 |
| AcsI | RAATTY | 3 cut(s) | 251, 528, 1342 |
| AcuI | CTGAAG | 1 cut(s) | 1024 |
| AfaI | GTAC | 1 cut(s) | 719 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 434, 599, 762 |
| AflII | CTTAAG | 1 cut(s) | 469 |
| AgsI | TTSAA | 9 cut(s) | 8, 95, 218, 285, 533, 874, 949, 1093, 1426 |
| AhlI | ACTAGT | 2 cut(s) | 68, 1247 |
| AjnI | CCWGG | 4 cut(s) | 654, 676, 797, 1052 |
| AleI | CACNNNNGTG | 1 cut(s) | 938 |
| AluBI | AGCT | 9 cut(s) | 11, 56, 806, 976, 989, 1112, 1283, 1291, 1381 |
| AluI | AGCT | 9 cut(s) | 11, 56, 806, 976, 989, 1112, 1283, 1291, 1381 |
| Alw21I | GWGCWC | 2 cut(s) | 1276, 1293 |
| Alw26I | GTCTC | 1 cut(s) | 134 |
| AlwI | GGATC | 2 cut(s) | 410, 1225 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 155, 599, 846 |
| AoxI | GGCC | 3 cut(s) | 679, 1032, 1348 |
| ApeKI | GCWGC | 6 cut(s) | 11, 187, 920, 986, 1097, 1378 |
| ApoI | RAATTY | 3 cut(s) | 251, 528, 1342 |
| AspLEI | GCGC | 1 cut(s) | 630 |
| AspS9I | GGNCC | 2 cut(s) | 652, 1348 |
| AsuHPI | GGTGA | 3 cut(s) | 36, 650, 1177 |
| AsuII | TTCGAA | 1 cut(s) | 662 |
| AvaII | GGWCC | 1 cut(s) | 652 |
| BanII | GRGCYC | 1 cut(s) | 1293 |
| Bbv12I | GWGCWC | 2 cut(s) | 1276, 1293 |
| BbvI | GCAGC | 5 cut(s) | 199, 932, 998, 1109, 1390 |
| BccI | CCATC | 6 cut(s) | 317, 344, 623, 765, 1156, 1415 |
| BceAI | ACGGC | 2 cut(s) | 248, 666 |
| BciT130I | CCWGG | 4 cut(s) | 656, 678, 799, 1054 |
| BciVI | GTATCC | 1 cut(s) | 1383 |
| BcoDI | GTCTC | 1 cut(s) | 134 |
| BcuI | ACTAGT | 2 cut(s) | 68, 1247 |
| BfaI | CTAG | 5 cut(s) | 51, 69, 1113, 1221, 1248 |
| BfrI | CTTAAG | 1 cut(s) | 469 |
| BfuI | GTATCC | 1 cut(s) | 1383 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 678 |
| BisI | GCNGC | 7 cut(s) | 12, 188, 626, 921, 987, 1098, 1379 |
| BlsI | GCNGC | 7 cut(s) | 13, 189, 627, 922, 988, 1099, 1380 |
| Bme1390I | CCNGG | 4 cut(s) | 656, 678, 799, 1054 |
| Bme18I | GGWCC | 1 cut(s) | 652 |
| BmgT120I | GGNCC | 2 cut(s) | 652, 1348 |
| BmrFI | CCNGG | 4 cut(s) | 656, 678, 799, 1054 |
| BmsI | GCATC | 2 cut(s) | 601, 892 |
| Bpu14I | TTCGAA | 1 cut(s) | 662 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 4 cut(s) | 292, 398, 655, 690 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 434, 599, 762 |
| Bse1I | ACTGG | 1 cut(s) | 31 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 4 cut(s) | 656, 678, 799, 1054 |
| BseDI | CCNNGG | 4 cut(s) | 292, 398, 655, 690 |
| BseGI | GGATG | 3 cut(s) | 355, 745, 776 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 434, 599, 762 |
| BseMII | CTCAG | 2 cut(s) | 473, 1373 |
| BseNI | ACTGG | 1 cut(s) | 31 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseXI | GCAGC | 5 cut(s) | 199, 932, 998, 1109, 1390 |
| BseYI | CCCAGC | 2 cut(s) | 592, 1283 |
| Bsh1236I | CGCG | 2 cut(s) | 625, 630 |
| BshFI | GGCC | 3 cut(s) | 681, 1034, 1350 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1276, 1293 |
| BslFI | GGGAC | 2 cut(s) | 79, 577 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 434, 599, 762 |
| BsmAI | GTCTC | 1 cut(s) | 134 |
| BsmFI | GGGAC | 2 cut(s) | 79, 577 |
| BsmI | GAATGC | 1 cut(s) | 922 |
| BsnI | GGCC | 3 cut(s) | 681, 1034, 1350 |
| Bsp119I | TTCGAA | 1 cut(s) | 662 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1276, 1293 |
| Bsp143I | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| Bsp19I | CCATGG | 1 cut(s) | 292 |
| BspACI | CCGC | 3 cut(s) | 625, 636, 674 |
| BspANI | GGCC | 3 cut(s) | 681, 1034, 1350 |
| BspCNI | CTCAG | 2 cut(s) | 472, 1374 |
| BspFNI | CGCG | 2 cut(s) | 625, 630 |
| BspPI | GGATC | 2 cut(s) | 410, 1225 |
| BspT104I | TTCGAA | 1 cut(s) | 662 |
| BspTI | CTTAAG | 1 cut(s) | 469 |
| BsrI | ACTGG | 1 cut(s) | 31 |
| BssECI | CCNNGG | 4 cut(s) | 292, 398, 655, 690 |
| BssMI | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| BssT1I | CCWWGG | 2 cut(s) | 292, 398 |
| Bst2UI | CCWGG | 4 cut(s) | 656, 678, 799, 1054 |
| Bst4CI | ACNGT | 3 cut(s) | 668, 848, 937 |
| Bst6I | CTCTTC | 1 cut(s) | 1177 |
| BstAFI | CTTAAG | 1 cut(s) | 469 |
| BstBI | TTCGAA | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 2 cut(s) | 674, 1110 |
| BstDEI | CTNAG | 5 cut(s) | 459, 704, 968, 977, 1382 |
| BstDSI | CCRYGG | 2 cut(s) | 292, 690 |
| BstEII | GGTNACC | 1 cut(s) | 695 |
| BstF5I | GGATG | 3 cut(s) | 355, 745, 776 |
| BstFNI | CGCG | 2 cut(s) | 625, 630 |
| BstHHI | GCGC | 1 cut(s) | 630 |
| BstKTI | GATC | 9 cut(s) | 91, 393, 405, 643, 929, 967, 1220, 1236, 1305 |
| BstMAI | GTCTC | 1 cut(s) | 134 |
| BstMBI | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 602, 611, 678, 1280, 1412 |
| BstNI | CCWGG | 4 cut(s) | 656, 678, 799, 1054 |
| BstNSI | RCATGY | 2 cut(s) | 727, 1337 |
| BstPI | GGTNACC | 1 cut(s) | 695 |
| BstSCI | CCNGG | 4 cut(s) | 654, 676, 797, 1052 |
| BstUI | CGCG | 2 cut(s) | 625, 630 |
| BstV1I | GCAGC | 5 cut(s) | 199, 932, 998, 1109, 1390 |
| BstX2I | RGATCY | 1 cut(s) | 1217 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1023, 1307 |
| BstYI | RGATCY | 1 cut(s) | 1217 |
| BsuI | GTATCC | 1 cut(s) | 1383 |
| BsuRI | GGCC | 3 cut(s) | 681, 1034, 1350 |
| BtgI | CCRYGG | 2 cut(s) | 292, 690 |
| BtsCI | GGATG | 3 cut(s) | 355, 745, 776 |
| BtsI | GCAGTG | 1 cut(s) | 334 |
| BtsIMutI | CAGTG | 3 cut(s) | 334, 844, 933 |
| Cac8I | GCNNGC | 2 cut(s) | 674, 1110 |
| CaiI | CAGNNNCTG | 3 cut(s) | 155, 599, 846 |
| CfoI | GCGC | 1 cut(s) | 630 |
| Cfr13I | GGNCC | 2 cut(s) | 652, 1348 |
| CseI | GACGC | 3 cut(s) | 585, 619, 631 |
| Csp6I | GTAC | 1 cut(s) | 718 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 918, 953 |
| CviAII | CATG | 6 cut(s) | 191, 293, 724, 1322, 1334, 1403 |
| CviQI | GTAC | 1 cut(s) | 718 |
| DdeI | CTNAG | 5 cut(s) | 459, 704, 968, 977, 1382 |
| DpnI | GATC | 9 cut(s) | 90, 392, 404, 642, 928, 966, 1219, 1235, 1304 |
| DpnII | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| EaeI | YGGCCR | 1 cut(s) | 679 |
| Eam1104I | CTCTTC | 1 cut(s) | 1177 |
| EarI | CTCTTC | 1 cut(s) | 1177 |
| Ecl136II | GAGCTC | 1 cut(s) | 1291 |
| Eco130I | CCWWGG | 2 cut(s) | 292, 398 |
| Eco147I | AGGCCT | 1 cut(s) | 1034 |
| Eco24I | GRGCYC | 1 cut(s) | 1293 |
| Eco47I | GGWCC | 1 cut(s) | 652 |
| Eco53kI | GAGCTC | 1 cut(s) | 1291 |
| Eco57I | CTGAAG | 1 cut(s) | 1024 |
| Eco91I | GGTNACC | 1 cut(s) | 695 |
| EcoICRI | GAGCTC | 1 cut(s) | 1291 |
| EcoO65I | GGTNACC | 1 cut(s) | 695 |
| EcoRI | GAATTC | 1 cut(s) | 528 |
| EcoRII | CCWGG | 4 cut(s) | 654, 676, 797, 1052 |
| EcoT14I | CCWWGG | 2 cut(s) | 292, 398 |
| EcoT38I | GRGCYC | 1 cut(s) | 1293 |
| ErhI | CCWWGG | 2 cut(s) | 292, 398 |
| FaeI | CATG | 6 cut(s) | 194, 296, 727, 1325, 1337, 1406 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1022, 1054, 1174, 1206 |
| FaqI | GGGAC | 2 cut(s) | 79, 577 |
| FatI | CATG | 6 cut(s) | 190, 292, 723, 1321, 1333, 1402 |
| FauI | CCCGC | 1 cut(s) | 681 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 188, 626, 921, 987, 1098, 1379 |
| FokI | GGATG | 3 cut(s) | 362, 752, 783 |
| FriOI | GRGCYC | 1 cut(s) | 1293 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 188, 626, 921, 987, 1098, 1379 |
| FspBI | CTAG | 5 cut(s) | 51, 69, 1113, 1221, 1248 |
| GlaI | GCGC | 1 cut(s) | 629 |
| GluI | GCNGC | 7 cut(s) | 12, 188, 626, 921, 987, 1098, 1379 |
| GsaI | CCCAGC | 2 cut(s) | 596, 1287 |
| HaeIII | GGCC | 3 cut(s) | 681, 1034, 1350 |
| HgaI | GACGC | 3 cut(s) | 585, 619, 631 |
| HhaI | GCGC | 1 cut(s) | 630 |
| Hin1II | CATG | 6 cut(s) | 194, 296, 727, 1325, 1337, 1406 |
| Hin6I | GCGC | 1 cut(s) | 628 |
| HinP1I | GCGC | 1 cut(s) | 628 |
| HincII | GTYRAC | 1 cut(s) | 130 |
| HindII | GTYRAC | 1 cut(s) | 130 |
| HinfI | GANTC | 9 cut(s) | 146, 170, 299, 355, 588, 712, 1012, 1049, 1085 |
| HphI | GGTGA | 3 cut(s) | 36, 650, 1177 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 7 cut(s) | 112, 157, 175, 462, 610, 1043, 1254 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 77, 92, 619, 1004, 1221, 1300, 1426 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| HpyAV | CCTTC | 2 cut(s) | 57, 1198 |
| HpyCH4III | ACNGT | 3 cut(s) | 668, 848, 937 |
| HpyCH4V | TGCA | 8 cut(s) | 187, 493, 727, 751, 920, 1097, 1362, 1415 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 602, 611, 678, 1280, 1412 |
| HpyF3I | CTNAG | 5 cut(s) | 459, 704, 968, 977, 1382 |
| Hsp92II | CATG | 6 cut(s) | 194, 296, 727, 1325, 1337, 1406 |
| HspAI | GCGC | 1 cut(s) | 628 |
| Kzo9I | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| LmnI | GCTCC | 1 cut(s) | 1288 |
| Lsp1109I | GCAGC | 5 cut(s) | 199, 932, 998, 1109, 1390 |
| LweI | GCATC | 2 cut(s) | 601, 892 |
| MaeI | CTAG | 5 cut(s) | 51, 69, 1113, 1221, 1248 |
| MaeIII | GTNAC | 4 cut(s) | 226, 695, 777, 1058 |
| MalI | GATC | 9 cut(s) | 90, 392, 404, 642, 928, 966, 1219, 1235, 1304 |
| MboI | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| MboII | GAAGA | 8 cut(s) | 107, 230, 353, 382, 400, 537, 1194, 1243 |
| MfeI | CAATTG | 3 cut(s) | 505, 552, 905 |
| MflI | RGATCY | 1 cut(s) | 1217 |
| MhlI | GDGCHC | 2 cut(s) | 1276, 1293 |
| MlyI | GAGTC | 3 cut(s) | 721, 1058, 1094 |
| MmeI | TCCRAC | 1 cut(s) | 1195 |
| MseI | TTAA | 6 cut(s) | 35, 201, 470, 482, 810, 1029 |
| MslI | CAYNNNNRTG | 2 cut(s) | 938, 1133 |
| MspA1I | CMGCKG | 2 cut(s) | 636, 1381 |
| MspCI | CTTAAG | 1 cut(s) | 469 |
| MspR9I | CCNGG | 4 cut(s) | 656, 678, 799, 1054 |
| MunI | CAATTG | 3 cut(s) | 505, 552, 905 |
| Mva1269I | GAATGC | 1 cut(s) | 922 |
| MvaI | CCWGG | 4 cut(s) | 656, 678, 799, 1054 |
| MvnI | CGCG | 2 cut(s) | 625, 630 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 602, 611, 678, 1280, 1412 |
| NcoI | CCATGG | 1 cut(s) | 292 |
| NdeII | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| NlaIII | CATG | 6 cut(s) | 194, 296, 727, 1325, 1337, 1406 |
| NmuCI | GTSAC | 3 cut(s) | 226, 777, 1058 |
| NspI | RCATGY | 2 cut(s) | 727, 1337 |
| NspV | TTCGAA | 1 cut(s) | 662 |
| OliI | CACNNNNGTG | 1 cut(s) | 938 |
| PceI | AGGCCT | 1 cut(s) | 1034 |
| PctI | GAATGC | 1 cut(s) | 922 |
| PfeI | GAWTC | 6 cut(s) | 146, 170, 299, 355, 588, 1012 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 599 |
| PfoI | TCCNGGA | 1 cut(s) | 797 |
| PkrI | GCNGC | 7 cut(s) | 13, 189, 627, 922, 988, 1099, 1380 |
| PleI | GAGTC | 3 cut(s) | 720, 1057, 1093 |
| PpsI | GAGTC | 3 cut(s) | 720, 1057, 1093 |
| Psp124BI | GAGCTC | 1 cut(s) | 1293 |
| Psp6I | CCWGG | 4 cut(s) | 654, 676, 797, 1052 |
| PspEI | GGTNACC | 1 cut(s) | 695 |
| PspFI | CCCAGC | 2 cut(s) | 592, 1283 |
| PspGI | CCWGG | 4 cut(s) | 654, 676, 797, 1052 |
| PspPI | GGNCC | 2 cut(s) | 652, 1348 |
| PstNI | CAGNNNCTG | 3 cut(s) | 155, 599, 846 |
| PsuI | RGATCY | 1 cut(s) | 1217 |
| PvuII | CAGCTG | 1 cut(s) | 1381 |
| RsaI | GTAC | 1 cut(s) | 719 |
| RsaNI | GTAC | 1 cut(s) | 718 |
| RseI | CAYNNNNRTG | 2 cut(s) | 938, 1133 |
| SacI | GAGCTC | 1 cut(s) | 1293 |
| SaqAI | TTAA | 6 cut(s) | 35, 201, 470, 482, 810, 1029 |
| SatI | GCNGC | 7 cut(s) | 12, 188, 626, 921, 987, 1098, 1379 |
| Sau3AI | GATC | 9 cut(s) | 88, 390, 402, 640, 926, 964, 1217, 1233, 1302 |
| Sau96I | GGNCC | 2 cut(s) | 652, 1348 |
| SchI | GAGTC | 3 cut(s) | 721, 1058, 1094 |
| ScrFI | CCNGG | 4 cut(s) | 656, 678, 799, 1054 |
| SduI | GDGCHC | 2 cut(s) | 1276, 1293 |
| SfaNI | GCATC | 2 cut(s) | 601, 892 |
| SfuI | TTCGAA | 1 cut(s) | 662 |
| SinI | GGWCC | 1 cut(s) | 652 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 938, 1133 |
| SmlI | CTYRAG | 2 cut(s) | 311, 469 |
| SmoI | CTYRAG | 2 cut(s) | 311, 469 |
| SpeI | ACTAGT | 2 cut(s) | 68, 1247 |
| SseBI | AGGCCT | 1 cut(s) | 1034 |
| SsiI | CCGC | 3 cut(s) | 625, 636, 674 |
| SspMI | CTAG | 5 cut(s) | 51, 69, 1113, 1221, 1248 |
| SstI | GAGCTC | 1 cut(s) | 1293 |
| StuI | AGGCCT | 1 cut(s) | 1034 |
| StyD4I | CCNGG | 4 cut(s) | 654, 676, 797, 1052 |
| StyI | CCWWGG | 2 cut(s) | 292, 398 |
| TaaI | ACNGT | 3 cut(s) | 668, 848, 937 |
| TaqI | TCGA | 2 cut(s) | 586, 662 |
| TauI | GCSGC | 1 cut(s) | 628 |
| TfiI | GAWTC | 6 cut(s) | 146, 170, 299, 355, 588, 1012 |
| Tru1I | TTAA | 6 cut(s) | 35, 201, 470, 482, 810, 1029 |
| Tru9I | TTAA | 6 cut(s) | 35, 201, 470, 482, 810, 1029 |
| TscAI | CASTG | 3 cut(s) | 334, 851, 940 |
| TseFI | GTSAC | 3 cut(s) | 226, 777, 1058 |
| TseI | GCWGC | 6 cut(s) | 11, 187, 920, 986, 1097, 1378 |
| Tsp45I | GTSAC | 3 cut(s) | 226, 777, 1058 |
| TspDTI | ATGAA | 2 cut(s) | 756, 1391 |
| TspRI | CASTG | 3 cut(s) | 334, 851, 940 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 599 |
| Vha464I | CTTAAG | 1 cut(s) | 469 |
| VpaK11BI | GGWCC | 1 cut(s) | 652 |
| XapI | RAATTY | 3 cut(s) | 251, 528, 1342 |
| XbaI | TCTAGA | 2 cut(s) | 50, 1220 |
| XceI | RCATGY | 2 cut(s) | 727, 1337 |
| XspI | CTAG | 5 cut(s) | 51, 69, 1113, 1221, 1248 |