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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 464 |
| Acc65I | GGTACC | 1 cut(s) | 795 |
| AccB1I | GGYRCC | 1 cut(s) | 795 |
| AclWI | GGATC | 4 cut(s) | 134, 432, 597, 925 |
| AcuI | CTGAAG | 1 cut(s) | 113 |
| AfaI | GTAC | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 302, 681, 822 |
| AgsI | TTSAA | 7 cut(s) | 244, 289, 437, 500, 635, 733, 880 |
| AluBI | AGCT | 7 cut(s) | 50, 127, 227, 376, 565, 707, 725 |
| AluI | AGCT | 7 cut(s) | 50, 127, 227, 376, 565, 707, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 229 |
| Alw26I | GTCTC | 3 cut(s) | 184, 694, 882 |
| AlwI | GGATC | 4 cut(s) | 134, 432, 597, 925 |
| Ama87I | CYCGRG | 1 cut(s) | 695 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| Asp718I | GGTACC | 1 cut(s) | 795 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuC2I | CCSGG | 1 cut(s) | 573 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaI | CYCGRG | 1 cut(s) | 695 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| AxyI | CCTNAGG | 1 cut(s) | 177 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 701, 734 |
| BanI | GGYRCC | 1 cut(s) | 795 |
| BanII | GRGCYC | 2 cut(s) | 229, 520 |
| Bbv12I | GWGCWC | 1 cut(s) | 229 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 2 cut(s) | 269, 361 |
| BcnI | CCSGG | 1 cut(s) | 573 |
| BcoDI | GTCTC | 3 cut(s) | 184, 694, 882 |
| BfaI | CTAG | 2 cut(s) | 272, 662 |
| BglII | AGATCT | 1 cut(s) | 257 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| Bme1390I | CCNGG | 1 cut(s) | 573 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmeT110I | CYCGRG | 1 cut(s) | 695 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 2 cut(s) | 294, 797 |
| BmrFI | CCNGG | 1 cut(s) | 573 |
| BmsI | GCATC | 3 cut(s) | 93, 322, 379 |
| BpmI | CTGGAG | 1 cut(s) | 449 |
| BpuEI | CTTGAG | 1 cut(s) | 793 |
| BpuMI | CCSGG | 1 cut(s) | 573 |
| BsaBI | GATNNNNATC | 1 cut(s) | 256 |
| BsaI | GGTCTC | 2 cut(s) | 184, 694 |
| BsaJI | CCNNGG | 3 cut(s) | 384, 609, 821 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 879, 909 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 302, 681, 822 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| Bse21I | CCTNAGG | 1 cut(s) | 177 |
| Bse3DI | GCAATG | 1 cut(s) | 948 |
| Bse8I | GATNNNNATC | 1 cut(s) | 256 |
| BseDI | CCNNGG | 3 cut(s) | 384, 609, 821 |
| BseGI | GGATG | 7 cut(s) | 84, 213, 257, 394, 462, 690, 745 |
| BseJI | GATNNNNATC | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 302, 681, 822 |
| BseMI | GCAATG | 1 cut(s) | 948 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BshNI | GGYRCC | 1 cut(s) | 795 |
| BsiHKAI | GWGCWC | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 1 cut(s) | 695 |
| BsiSI | CCGG | 1 cut(s) | 572 |
| BslFI | GGGAC | 1 cut(s) | 306 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 302, 681, 822 |
| BsmAI | GTCTC | 3 cut(s) | 184, 694, 882 |
| BsmFI | GGGAC | 1 cut(s) | 306 |
| Bso31I | GGTCTC | 2 cut(s) | 184, 694 |
| BsoBI | CYCGRG | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 3 cut(s) | 229, 283, 520 |
| Bsp143I | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| BspHI | TCATGA | 2 cut(s) | 582, 756 |
| BspLI | GGNNCC | 2 cut(s) | 294, 797 |
| BspPI | GGATC | 4 cut(s) | 134, 432, 597, 925 |
| BspQI | GCTCTTC | 1 cut(s) | 650 |
| BspT107I | GGYRCC | 1 cut(s) | 795 |
| BspTNI | GGTCTC | 2 cut(s) | 184, 694 |
| BsrDI | GCAATG | 1 cut(s) | 948 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssECI | CCNNGG | 3 cut(s) | 384, 609, 821 |
| BssMI | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| BssT1I | CCWWGG | 3 cut(s) | 384, 609, 821 |
| Bst4CI | ACNGT | 2 cut(s) | 312, 749 |
| Bst6I | CTCTTC | 2 cut(s) | 495, 650 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 300 |
| BstF5I | GGATG | 7 cut(s) | 84, 213, 257, 394, 462, 690, 745 |
| BstKTI | GATC | 5 cut(s) | 142, 260, 427, 592, 920 |
| BstMAI | GTCTC | 3 cut(s) | 184, 694, 882 |
| BstMBI | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 47, 56 |
| BstNSI | RCATGY | 1 cut(s) | 954 |
| BstSCI | CCNGG | 1 cut(s) | 571 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 2 cut(s) | 257, 424 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 37 |
| BstYI | RGATCY | 2 cut(s) | 257, 424 |
| Bsu36I | CCTNAGG | 1 cut(s) | 177 |
| BtgZI | GCGATG | 1 cut(s) | 380 |
| BtsCI | GGATG | 7 cut(s) | 84, 213, 257, 394, 462, 690, 745 |
| CciI | TCATGA | 2 cut(s) | 582, 756 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| Csp6I | GTAC | 1 cut(s) | 796 |
| CviAII | CATG | 7 cut(s) | 348, 393, 583, 736, 757, 800, 951 |
| CviQI | GTAC | 1 cut(s) | 796 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DpnI | GATC | 5 cut(s) | 141, 259, 426, 591, 919 |
| DpnII | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| DraI | TTTAAA | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 2 cut(s) | 495, 650 |
| EarI | CTCTTC | 2 cut(s) | 495, 650 |
| Ecl136II | GAGCTC | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 3 cut(s) | 384, 609, 821 |
| Eco24I | GRGCYC | 2 cut(s) | 229, 520 |
| Eco31I | GGTCTC | 2 cut(s) | 184, 694 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| Eco53kI | GAGCTC | 1 cut(s) | 227 |
| Eco57I | CTGAAG | 1 cut(s) | 113 |
| Eco81I | CCTNAGG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 1 cut(s) | 695 |
| EcoICRI | GAGCTC | 1 cut(s) | 227 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 300 |
| EcoO109I | RGGNCCY | 1 cut(s) | 293 |
| EcoT14I | CCWWGG | 3 cut(s) | 384, 609, 821 |
| EcoT22I | ATGCAT | 1 cut(s) | 394 |
| EcoT38I | GRGCYC | 2 cut(s) | 229, 520 |
| ErhI | CCWWGG | 3 cut(s) | 384, 609, 821 |
| FaeI | CATG | 7 cut(s) | 351, 396, 586, 739, 760, 803, 954 |
| FaqI | GGGAC | 1 cut(s) | 306 |
| FatI | CATG | 7 cut(s) | 347, 392, 582, 735, 756, 799, 950 |
| FauNDI | CATATG | 2 cut(s) | 361, 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 7 cut(s) | 71, 220, 264, 401, 469, 697, 752 |
| FriOI | GRGCYC | 2 cut(s) | 229, 520 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| FspBI | CTAG | 2 cut(s) | 272, 662 |
| GluI | GCNGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 1 cut(s) | 449 |
| HapII | CCGG | 1 cut(s) | 572 |
| Hin1II | CATG | 7 cut(s) | 351, 396, 586, 739, 760, 803, 954 |
| HincII | GTYRAC | 2 cut(s) | 904, 934 |
| HindII | GTYRAC | 2 cut(s) | 904, 934 |
| HpaII | CCGG | 1 cut(s) | 572 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 4 cut(s) | 549, 745, 904, 934 |
| Hpy188I | TCNGA | 1 cut(s) | 132 |
| Hpy188III | TCNNGA | 4 cut(s) | 428, 583, 757, 772 |
| Hpy8I | GTNNAC | 4 cut(s) | 549, 745, 904, 934 |
| HpyAV | CCTTC | 7 cut(s) | 283, 415, 437, 441, 580, 772, 785 |
| HpyCH4III | ACNGT | 2 cut(s) | 312, 749 |
| HpyCH4V | TGCA | 8 cut(s) | 20, 101, 168, 335, 392, 872, 941, 954 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 47, 56 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Hsp92II | CATG | 7 cut(s) | 351, 396, 586, 739, 760, 803, 954 |
| KpnI | GGTACC | 1 cut(s) | 799 |
| Kzo9I | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| LguI | GCTCTTC | 1 cut(s) | 650 |
| LmnI | GCTCC | 3 cut(s) | 124, 224, 373 |
| LpnPI | CCDG | 8 cut(s) | 106, 156, 207, 234, 362, 413, 585, 717 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 3 cut(s) | 93, 322, 379 |
| MaeI | CTAG | 2 cut(s) | 272, 662 |
| MaeIII | GTNAC | 2 cut(s) | 508, 749 |
| MalI | GATC | 5 cut(s) | 141, 259, 426, 591, 919 |
| MboI | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| MboII | GAAGA | 3 cut(s) | 512, 667, 721 |
| MflI | RGATCY | 2 cut(s) | 257, 424 |
| MhlI | GDGCHC | 3 cut(s) | 229, 283, 520 |
| MluCI | AATT | 1 cut(s) | 169 |
| MmeI | TCCRAC | 2 cut(s) | 48, 434 |
| Mph1103I | ATGCAT | 1 cut(s) | 394 |
| MseI | TTAA | 5 cut(s) | 162, 201, 314, 485, 762 |
| MslI | CAYNNNNRTG | 2 cut(s) | 397, 740 |
| MspI | CCGG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 47, 56 |
| NciI | CCSGG | 1 cut(s) | 573 |
| NdeI | CATATG | 2 cut(s) | 361, 543 |
| NdeII | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| NlaIII | CATG | 7 cut(s) | 351, 396, 586, 739, 760, 803, 954 |
| NlaIV | GGNNCC | 2 cut(s) | 294, 797 |
| NmuCI | GTSAC | 2 cut(s) | 508, 749 |
| NsiI | ATGCAT | 1 cut(s) | 394 |
| NspI | RCATGY | 1 cut(s) | 954 |
| PagI | TCATGA | 2 cut(s) | 582, 756 |
| PciSI | GCTCTTC | 1 cut(s) | 650 |
| PfoI | TCCNGGA | 1 cut(s) | 571 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| PpuMI | RGGWCCY | 1 cut(s) | 293 |
| PsiI | TTATAA | 1 cut(s) | 464 |
| Psp124BI | GAGCTC | 1 cut(s) | 229 |
| Psp5II | RGGWCCY | 1 cut(s) | 293 |
| PspN4I | GGNNCC | 2 cut(s) | 294, 797 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PspPPI | RGGWCCY | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 257, 424 |
| RsaI | GTAC | 1 cut(s) | 797 |
| RsaNI | GTAC | 1 cut(s) | 796 |
| RseI | CAYNNNNRTG | 2 cut(s) | 397, 740 |
| SacI | GAGCTC | 1 cut(s) | 229 |
| SapI | GCTCTTC | 1 cut(s) | 650 |
| SaqAI | TTAA | 5 cut(s) | 162, 201, 314, 485, 762 |
| SatI | GCNGC | 1 cut(s) | 60 |
| Sau3AI | GATC | 5 cut(s) | 139, 257, 424, 589, 917 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 1 cut(s) | 573 |
| SduI | GDGCHC | 3 cut(s) | 229, 283, 520 |
| SfaNI | GCATC | 3 cut(s) | 93, 322, 379 |
| SinI | GGWCC | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 397, 740 |
| SmlI | CTYRAG | 1 cut(s) | 772 |
| SmoI | CTYRAG | 1 cut(s) | 772 |
| Sse9I | AATT | 1 cut(s) | 169 |
| SspI | AATATT | 1 cut(s) | 910 |
| SspMI | CTAG | 2 cut(s) | 272, 662 |
| SstI | GAGCTC | 1 cut(s) | 229 |
| StyD4I | CCNGG | 1 cut(s) | 571 |
| StyI | CCWWGG | 3 cut(s) | 384, 609, 821 |
| TaaI | ACNGT | 2 cut(s) | 312, 749 |
| TaqI | TCGA | 1 cut(s) | 721 |
| TasI | AATT | 1 cut(s) | 169 |
| Tru1I | TTAA | 5 cut(s) | 162, 201, 314, 485, 762 |
| Tru9I | TTAA | 5 cut(s) | 162, 201, 314, 485, 762 |
| TseFI | GTSAC | 2 cut(s) | 508, 749 |
| TseI | GCWGC | 1 cut(s) | 59 |
| Tsp45I | GTSAC | 2 cut(s) | 508, 749 |
| TspDTI | ATGAA | 4 cut(s) | 456, 599, 659, 668 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 300 |
| XceI | RCATGY | 1 cut(s) | 954 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 201, 711 |
| XspI | CTAG | 2 cut(s) | 272, 662 |
| Zsp2I | ATGCAT | 1 cut(s) | 394 |