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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 270 |
| AciI | CCGC | 1 cut(s) | 96 |
| AclWI | GGATC | 2 cut(s) | 195, 323 |
| AcyI | GRCGYC | 1 cut(s) | 267 |
| AfaI | GTAC | 2 cut(s) | 213, 321 |
| AfeI | AGCGCT | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AgsI | TTSAA | 2 cut(s) | 109, 281 |
| AluBI | AGCT | 2 cut(s) | 9, 173 |
| AluI | AGCT | 2 cut(s) | 9, 173 |
| Alw26I | GTCTC | 2 cut(s) | 21, 86 |
| AlwI | GGATC | 2 cut(s) | 195, 323 |
| Aor51HI | AGCGCT | 1 cut(s) | 157 |
| AoxI | GGCC | 2 cut(s) | 76, 139 |
| ApeKI | GCWGC | 1 cut(s) | 345 |
| AspLEI | GCGC | 1 cut(s) | 158 |
| AspS9I | GGNCC | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 357 |
| BclI | TGATCA | 2 cut(s) | 39, 54 |
| BcoDI | GTCTC | 2 cut(s) | 21, 86 |
| BfaI | CTAG | 2 cut(s) | 6, 153 |
| BfmI | CTRYAG | 1 cut(s) | 343 |
| BfoI | RGCGCY | 1 cut(s) | 159 |
| BglII | AGATCT | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 346 |
| BlsI | GCNGC | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 1 cut(s) | 140 |
| BsaAI | YACGTR | 1 cut(s) | 215 |
| BsaHI | GRCGYC | 1 cut(s) | 267 |
| BsaI | GGTCTC | 2 cut(s) | 21, 86 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseXI | GCAGC | 1 cut(s) | 357 |
| BshFI | GGCC | 2 cut(s) | 78, 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 2 cut(s) | 21, 86 |
| BsnI | GGCC | 2 cut(s) | 78, 141 |
| Bso31I | GGTCTC | 2 cut(s) | 21, 86 |
| Bsp143I | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 2 cut(s) | 78, 141 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspMAI | CTGCAG | 1 cut(s) | 347 |
| BspPI | GGATC | 2 cut(s) | 195, 323 |
| BspTNI | GGTCTC | 2 cut(s) | 21, 86 |
| BssMI | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| BssNI | GRCGYC | 1 cut(s) | 267 |
| BstACI | GRCGYC | 1 cut(s) | 267 |
| BstBAI | YACGTR | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 1 cut(s) | 100 |
| BstDEI | CTNAG | 1 cut(s) | 294 |
| BstH2I | RGCGCY | 1 cut(s) | 159 |
| BstHHI | GCGC | 1 cut(s) | 158 |
| BstKTI | GATC | 5 cut(s) | 42, 57, 203, 223, 331 |
| BstMAI | GTCTC | 2 cut(s) | 21, 86 |
| BstMBI | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 84, 162 |
| BstNSI | RCATGY | 1 cut(s) | 87 |
| BstSFI | CTRYAG | 1 cut(s) | 343 |
| BstSNI | TACGTA | 1 cut(s) | 215 |
| BstV1I | GCAGC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 200, 220 |
| BstYI | RGATCY | 2 cut(s) | 200, 220 |
| BsuRI | GGCC | 2 cut(s) | 78, 141 |
| BtgZI | GCGATG | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 1 cut(s) | 100 |
| CfoI | GCGC | 1 cut(s) | 158 |
| Cfr13I | GGNCC | 1 cut(s) | 140 |
| Csp6I | GTAC | 2 cut(s) | 212, 320 |
| CviAII | CATG | 2 cut(s) | 43, 84 |
| CviJI | RGCY | 6 cut(s) | 9, 26, 78, 141, 173, 353 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 26, 78, 141, 173, 353 |
| CviQI | GTAC | 2 cut(s) | 212, 320 |
| DdeI | CTNAG | 1 cut(s) | 294 |
| DpnI | GATC | 5 cut(s) | 41, 56, 202, 222, 330 |
| DpnII | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| Eco105I | TACGTA | 1 cut(s) | 215 |
| Eco31I | GGTCTC | 2 cut(s) | 21, 86 |
| Eco47III | AGCGCT | 1 cut(s) | 157 |
| FaeI | CATG | 2 cut(s) | 46, 87 |
| FaiI | YATR | 5 cut(s) | 44, 64, 85, 236, 261 |
| FatI | CATG | 2 cut(s) | 42, 83 |
| FbaI | TGATCA | 2 cut(s) | 39, 54 |
| Fnu4HI | GCNGC | 1 cut(s) | 346 |
| Fsp4HI | GCNGC | 1 cut(s) | 346 |
| FspBI | CTAG | 2 cut(s) | 6, 153 |
| GlaI | GCGC | 1 cut(s) | 157 |
| GluI | GCNGC | 1 cut(s) | 346 |
| HaeII | RGCGCY | 1 cut(s) | 159 |
| HaeIII | GGCC | 2 cut(s) | 78, 141 |
| HhaI | GCGC | 1 cut(s) | 158 |
| Hin1I | GRCGYC | 1 cut(s) | 267 |
| Hin1II | CATG | 2 cut(s) | 46, 87 |
| Hin6I | GCGC | 1 cut(s) | 156 |
| HinP1I | GCGC | 1 cut(s) | 156 |
| HinfI | GANTC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 1 cut(s) | 272 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 204, 326 |
| Hpy99I | CGWCG | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 2 cut(s) | 214, 267 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 303, 345 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 84, 162 |
| HpyF3I | CTNAG | 1 cut(s) | 294 |
| HpySE526I | ACGT | 2 cut(s) | 214, 267 |
| Hsp92I | GRCGYC | 1 cut(s) | 267 |
| Hsp92II | CATG | 2 cut(s) | 46, 87 |
| HspAI | GCGC | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 2 cut(s) | 39, 54 |
| Kzo9I | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| LmnI | GCTCC | 1 cut(s) | 170 |
| LpnPI | CCDG | 5 cut(s) | 81, 84, 127, 217, 330 |
| Lsp1109I | GCAGC | 1 cut(s) | 357 |
| MaeI | CTAG | 2 cut(s) | 6, 153 |
| MaeII | ACGT | 2 cut(s) | 214, 267 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 5 cut(s) | 41, 56, 202, 222, 330 |
| MboI | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| MflI | RGATCY | 2 cut(s) | 200, 220 |
| MluCI | AATT | 2 cut(s) | 182, 312 |
| MmeI | TCCRAC | 3 cut(s) | 112, 170, 250 |
| MnlI | CCTC | 4 cut(s) | 89, 153, 303, 333 |
| MseI | TTAA | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 84, 162 |
| NdeII | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| NlaIII | CATG | 2 cut(s) | 46, 87 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspI | RCATGY | 1 cut(s) | 87 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 1 cut(s) | 347 |
| Ppu21I | YACGTR | 1 cut(s) | 215 |
| PspPI | GGNCC | 1 cut(s) | 140 |
| PstI | CTGCAG | 1 cut(s) | 347 |
| PsuI | RGATCY | 2 cut(s) | 200, 220 |
| RsaI | GTAC | 2 cut(s) | 213, 321 |
| RsaNI | GTAC | 2 cut(s) | 212, 320 |
| SaqAI | TTAA | 1 cut(s) | 364 |
| SatI | GCNGC | 1 cut(s) | 346 |
| Sau3AI | GATC | 5 cut(s) | 39, 54, 200, 220, 328 |
| Sau96I | GGNCC | 1 cut(s) | 140 |
| SetI | ASST | 6 cut(s) | 11, 175, 217, 270, 309, 325 |
| SfcI | CTRYAG | 1 cut(s) | 343 |
| SnaBI | TACGTA | 1 cut(s) | 215 |
| Sse9I | AATT | 2 cut(s) | 182, 312 |
| SsiI | CCGC | 1 cut(s) | 96 |
| SspMI | CTAG | 2 cut(s) | 6, 153 |
| TaiI | ACGT | 2 cut(s) | 217, 270 |
| TasI | AATT | 2 cut(s) | 182, 312 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 1 cut(s) | 364 |
| Tru9I | TTAA | 1 cut(s) | 364 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 345 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 2 cut(s) | 248, 251 |
| XceI | RCATGY | 1 cut(s) | 87 |
| XspI | CTAG | 2 cut(s) | 6, 153 |
| ZraI | GACGTC | 1 cut(s) | 268 |