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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 95 |
| AccI | GTMKAC | 1 cut(s) | 564 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 77, 158, 159, 432, 453 |
| AgsI | TTSAA | 4 cut(s) | 268, 319, 368, 649 |
| AleI | CACNNNNGTG | 1 cut(s) | 88 |
| AluBI | AGCT | 3 cut(s) | 38, 176, 385 |
| AluI | AGCT | 3 cut(s) | 38, 176, 385 |
| Alw21I | GWGCWC | 2 cut(s) | 85, 139 |
| Alw26I | GTCTC | 2 cut(s) | 228, 513 |
| Alw44I | GTGCAC | 2 cut(s) | 81, 135 |
| ApaLI | GTGCAC | 2 cut(s) | 81, 135 |
| AspS9I | GGNCC | 3 cut(s) | 149, 601, 658 |
| AsuC2I | CCSGG | 1 cut(s) | 662 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 391 |
| AvaII | GGWCC | 3 cut(s) | 149, 601, 658 |
| BaeGI | GKGCMC | 2 cut(s) | 85, 139 |
| BbsI | GAAGAC | 1 cut(s) | 701 |
| Bbv12I | GWGCWC | 2 cut(s) | 85, 139 |
| BbvCI | CCTCAGC | 1 cut(s) | 528 |
| BccI | CCATC | 2 cut(s) | 125, 246 |
| BclI | TGATCA | 1 cut(s) | 294 |
| BcnI | CCSGG | 1 cut(s) | 662 |
| BcoDI | GTCTC | 2 cut(s) | 228, 513 |
| BfaI | CTAG | 3 cut(s) | 33, 339, 727 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BfuAI | ACCTGC | 1 cut(s) | 95 |
| BglII | AGATCT | 1 cut(s) | 113 |
| Bme1390I | CCNGG | 1 cut(s) | 662 |
| Bme18I | GGWCC | 3 cut(s) | 149, 601, 658 |
| BmgT120I | GGNCC | 3 cut(s) | 149, 601, 658 |
| BmiI | GGNNCC | 4 cut(s) | 150, 151, 602, 660 |
| BmrFI | CCNGG | 1 cut(s) | 662 |
| BpiI | GAAGAC | 1 cut(s) | 701 |
| Bpu10I | CCTNAGC | 1 cut(s) | 528 |
| BpuMI | CCSGG | 1 cut(s) | 662 |
| BsaBI | GATNNNNATC | 1 cut(s) | 611 |
| BsaI | GGTCTC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 3 cut(s) | 430, 452, 511 |
| BsaWI | WCCGGW | 1 cut(s) | 228 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 77, 158, 159, 432, 453 |
| Bse3DI | GCAATG | 3 cut(s) | 228, 498, 522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 611 |
| BseDI | CCNNGG | 3 cut(s) | 430, 452, 511 |
| BseGI | GGATG | 3 cut(s) | 67, 136, 670 |
| BseJI | GATNNNNATC | 1 cut(s) | 611 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 77, 158, 159, 432, 453 |
| BseMI | GCAATG | 3 cut(s) | 228, 498, 522 |
| BseMII | CTCAG | 1 cut(s) | 519 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 2 cut(s) | 85, 139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 85, 139 |
| BsiSI | CCGG | 2 cut(s) | 229, 662 |
| BslFI | GGGAC | 2 cut(s) | 162, 614 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 77, 158, 159, 432, 453 |
| BsmAI | GTCTC | 2 cut(s) | 228, 513 |
| BsmFI | GGGAC | 2 cut(s) | 162, 614 |
| Bso31I | GGTCTC | 1 cut(s) | 228 |
| Bsp1286I | GDGCHC | 2 cut(s) | 85, 139 |
| Bsp143I | GATC | 3 cut(s) | 113, 294, 723 |
| Bsp19I | CCATGG | 2 cut(s) | 430, 511 |
| BspCNI | CTCAG | 1 cut(s) | 520 |
| BspHI | TCATGA | 1 cut(s) | 291 |
| BspLI | GGNNCC | 4 cut(s) | 150, 151, 602, 660 |
| BspMI | ACCTGC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 228 |
| BsrDI | GCAATG | 3 cut(s) | 228, 498, 522 |
| BssECI | CCNNGG | 3 cut(s) | 430, 452, 511 |
| BssMI | GATC | 3 cut(s) | 113, 294, 723 |
| BssT1I | CCWWGG | 3 cut(s) | 430, 452, 511 |
| Bst4CI | ACNGT | 1 cut(s) | 284 |
| Bst6I | CTCTTC | 2 cut(s) | 363, 644 |
| BstC8I | GCNNGC | 2 cut(s) | 623, 627 |
| BstDEI | CTNAG | 1 cut(s) | 528 |
| BstDSI | CCRYGG | 2 cut(s) | 430, 511 |
| BstEII | GGTNACC | 1 cut(s) | 27 |
| BstF5I | GGATG | 3 cut(s) | 67, 136, 670 |
| BstKTI | GATC | 3 cut(s) | 116, 297, 726 |
| BstMAI | GTCTC | 2 cut(s) | 228, 513 |
| BstMBI | GATC | 3 cut(s) | 113, 294, 723 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 635 |
| BstNSI | RCATGY | 2 cut(s) | 585, 629 |
| BstPI | GGTNACC | 1 cut(s) | 27 |
| BstSCI | CCNGG | 1 cut(s) | 660 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstSLI | GKGCMC | 2 cut(s) | 85, 139 |
| BstV2I | GAAGAC | 1 cut(s) | 701 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BtgI | CCRYGG | 2 cut(s) | 430, 511 |
| BtsCI | GGATG | 3 cut(s) | 67, 136, 670 |
| BtsIMutI | CAGTG | 1 cut(s) | 83 |
| BveI | ACCTGC | 1 cut(s) | 95 |
| Cac8I | GCNNGC | 2 cut(s) | 623, 627 |
| CciI | TCATGA | 1 cut(s) | 291 |
| Cfr13I | GGNCC | 3 cut(s) | 149, 601, 658 |
| CseI | GACGC | 1 cut(s) | 23 |
| CviAII | CATG | 9 cut(s) | 204, 216, 292, 361, 431, 512, 582, 626, 681 |
| DdeI | CTNAG | 1 cut(s) | 528 |
| DpnI | GATC | 3 cut(s) | 115, 296, 725 |
| DpnII | GATC | 3 cut(s) | 113, 294, 723 |
| Eam1104I | CTCTTC | 2 cut(s) | 363, 644 |
| EarI | CTCTTC | 2 cut(s) | 363, 644 |
| Eco130I | CCWWGG | 3 cut(s) | 430, 452, 511 |
| Eco31I | GGTCTC | 1 cut(s) | 228 |
| Eco47I | GGWCC | 3 cut(s) | 149, 601, 658 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| Eco91I | GGTNACC | 1 cut(s) | 27 |
| EcoO109I | RGGNCCY | 3 cut(s) | 149, 601, 658 |
| EcoO65I | GGTNACC | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 3 cut(s) | 430, 452, 511 |
| ErhI | CCWWGG | 3 cut(s) | 430, 452, 511 |
| FaeI | CATG | 9 cut(s) | 207, 219, 295, 364, 434, 515, 585, 629, 684 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 80, 112, 137, 169 |
| FaqI | GGGAC | 2 cut(s) | 162, 614 |
| FatI | CATG | 9 cut(s) | 203, 215, 291, 360, 430, 511, 581, 625, 680 |
| FauNDI | CATATG | 1 cut(s) | 305 |
| FbaI | TGATCA | 1 cut(s) | 294 |
| FblI | GTMKAC | 1 cut(s) | 564 |
| FokI | GGATG | 3 cut(s) | 74, 143, 677 |
| FspBI | CTAG | 3 cut(s) | 33, 339, 727 |
| HapII | CCGG | 2 cut(s) | 229, 662 |
| HgaI | GACGC | 1 cut(s) | 23 |
| Hin1II | CATG | 9 cut(s) | 207, 219, 295, 364, 434, 515, 585, 629, 684 |
| HindIII | AAGCTT | 1 cut(s) | 383 |
| HinfI | GANTC | 1 cut(s) | 612 |
| HpaII | CCGG | 2 cut(s) | 229, 662 |
| HphI | GGTGA | 2 cut(s) | 19, 391 |
| Hpy166II | GTNNAC | 5 cut(s) | 10, 43, 83, 137, 565 |
| Hpy188III | TCNNGA | 4 cut(s) | 242, 292, 550, 691 |
| Hpy8I | GTNNAC | 5 cut(s) | 10, 43, 83, 137, 565 |
| Hpy99I | CGWCG | 1 cut(s) | 17 |
| HpyAV | CCTTC | 4 cut(s) | 46, 52, 271, 517 |
| HpyCH4III | ACNGT | 1 cut(s) | 284 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 635 |
| HpyF3I | CTNAG | 1 cut(s) | 528 |
| Hsp92II | CATG | 9 cut(s) | 207, 219, 295, 364, 434, 515, 585, 629, 684 |
| KflI | GGGWCCC | 1 cut(s) | 149 |
| Ksp22I | TGATCA | 1 cut(s) | 294 |
| Kzo9I | GATC | 3 cut(s) | 113, 294, 723 |
| MaeI | CTAG | 3 cut(s) | 33, 339, 727 |
| MaeIII | GTNAC | 3 cut(s) | 27, 284, 355 |
| MalI | GATC | 3 cut(s) | 115, 296, 725 |
| MboI | GATC | 3 cut(s) | 113, 294, 723 |
| MboII | GAAGA | 6 cut(s) | 256, 380, 481, 565, 661, 706 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 2 cut(s) | 85, 139 |
| MluCI | AATT | 3 cut(s) | 73, 120, 164 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MnlI | CCTC | 7 cut(s) | 40, 328, 523, 570, 588, 645, 649 |
| MseI | TTAA | 3 cut(s) | 99, 186, 374 |
| MslI | CAYNNNNRTG | 2 cut(s) | 88, 275 |
| MspI | CCGG | 2 cut(s) | 229, 662 |
| MspR9I | CCNGG | 1 cut(s) | 662 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 635 |
| NciI | CCSGG | 1 cut(s) | 662 |
| NcoI | CCATGG | 2 cut(s) | 430, 511 |
| NdeI | CATATG | 1 cut(s) | 305 |
| NdeII | GATC | 3 cut(s) | 113, 294, 723 |
| NlaIII | CATG | 9 cut(s) | 207, 219, 295, 364, 434, 515, 585, 629, 684 |
| NlaIV | GGNNCC | 4 cut(s) | 150, 151, 602, 660 |
| NmuCI | GTSAC | 2 cut(s) | 284, 355 |
| NspI | RCATGY | 2 cut(s) | 585, 629 |
| OliI | CACNNNNGTG | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 629 |
| PagI | TCATGA | 1 cut(s) | 291 |
| PfeI | GAWTC | 1 cut(s) | 612 |
| PpuMI | RGGWCCY | 3 cut(s) | 149, 601, 658 |
| Psp5II | RGGWCCY | 3 cut(s) | 149, 601, 658 |
| PspEI | GGTNACC | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 4 cut(s) | 150, 151, 602, 660 |
| PspPI | GGNCC | 3 cut(s) | 149, 601, 658 |
| PspPPI | RGGWCCY | 3 cut(s) | 149, 601, 658 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| RseI | CAYNNNNRTG | 2 cut(s) | 88, 275 |
| SaqAI | TTAA | 3 cut(s) | 99, 186, 374 |
| Sau3AI | GATC | 3 cut(s) | 113, 294, 723 |
| Sau96I | GGNCC | 3 cut(s) | 149, 601, 658 |
| ScrFI | CCNGG | 1 cut(s) | 662 |
| SduI | GDGCHC | 2 cut(s) | 85, 139 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SinI | GGWCC | 3 cut(s) | 149, 601, 658 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 88, 275 |
| SphI | GCATGC | 1 cut(s) | 629 |
| Sse9I | AATT | 3 cut(s) | 73, 120, 164 |
| SspMI | CTAG | 3 cut(s) | 33, 339, 727 |
| StyD4I | CCNGG | 1 cut(s) | 660 |
| StyI | CCWWGG | 3 cut(s) | 430, 452, 511 |
| TaaI | ACNGT | 1 cut(s) | 284 |
| TaqI | TCGA | 1 cut(s) | 551 |
| TasI | AATT | 3 cut(s) | 73, 120, 164 |
| TfiI | GAWTC | 1 cut(s) | 612 |
| Tru1I | TTAA | 3 cut(s) | 99, 186, 374 |
| Tru9I | TTAA | 3 cut(s) | 99, 186, 374 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TseFI | GTSAC | 2 cut(s) | 284, 355 |
| Tsp45I | GTSAC | 2 cut(s) | 284, 355 |
| TspDTI | ATGAA | 1 cut(s) | 78 |
| TspRI | CASTG | 1 cut(s) | 90 |
| VneI | GTGCAC | 2 cut(s) | 81, 135 |
| VpaK11BI | GGWCC | 3 cut(s) | 149, 601, 658 |
| XceI | RCATGY | 2 cut(s) | 585, 629 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 564 |
| XspI | CTAG | 3 cut(s) | 33, 339, 727 |