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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 357 |
| AccB1I | GGYRCC | 1 cut(s) | 505 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 161, 491, 671 |
| AciI | CCGC | 1 cut(s) | 377 |
| AclWI | GGATC | 1 cut(s) | 302 |
| AcsI | RAATTY | 1 cut(s) | 642 |
| AcuI | CTGAAG | 1 cut(s) | 803 |
| AcvI | CACGTG | 1 cut(s) | 500 |
| AfaI | GTAC | 2 cut(s) | 14, 167 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 61, 161, 467, 491, 515, 671 |
| AflIII | ACRYGT | 1 cut(s) | 201 |
| AgsI | TTSAA | 2 cut(s) | 415, 822 |
| AjnI | CCWGG | 2 cut(s) | 142, 154 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 144, 176 |
| AluBI | AGCT | 7 cut(s) | 221, 260, 436, 441, 587, 621, 781 |
| AluI | AGCT | 7 cut(s) | 221, 260, 436, 441, 587, 621, 781 |
| AlwI | GGATC | 1 cut(s) | 302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 781 |
| AoxI | GGCC | 6 cut(s) | 115, 494, 518, 542, 590, 767 |
| ApoI | RAATTY | 1 cut(s) | 642 |
| AspA2I | CCTAGG | 1 cut(s) | 770 |
| AspLEI | GCGC | 1 cut(s) | 354 |
| AspS9I | GGNCC | 6 cut(s) | 116, 346, 452, 494, 518, 590 |
| AsuHPI | GGTGA | 1 cut(s) | 824 |
| AvaII | GGWCC | 2 cut(s) | 346, 452 |
| AvrII | CCTAGG | 1 cut(s) | 770 |
| BanI | GGYRCC | 1 cut(s) | 505 |
| BauI | CACGAG | 1 cut(s) | 383 |
| BbrPI | CACGTG | 1 cut(s) | 500 |
| BccI | CCATC | 7 cut(s) | 38, 296, 485, 509, 605, 665, 803 |
| BciT130I | CCWGG | 2 cut(s) | 144, 156 |
| BfaI | CTAG | 2 cut(s) | 510, 771 |
| BfmI | CTRYAG | 3 cut(s) | 56, 174, 828 |
| BfuAI | ACCTGC | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 378 |
| BlnI | CCTAGG | 1 cut(s) | 770 |
| BlpI | GCTNAGC | 1 cut(s) | 437 |
| BlsI | GCNGC | 1 cut(s) | 379 |
| Bme1390I | CCNGG | 2 cut(s) | 144, 156 |
| Bme18I | GGWCC | 2 cut(s) | 346, 452 |
| BmgT120I | GGNCC | 6 cut(s) | 116, 346, 452, 494, 518, 590 |
| BmiI | GGNNCC | 2 cut(s) | 507, 657 |
| BmrFI | CCNGG | 2 cut(s) | 144, 156 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 425, 457 |
| Bpu10I | CCTNAGC | 1 cut(s) | 456 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BsaAI | YACGTR | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 8 cut(s) | 112, 155, 263, 521, 545, 680, 708, 770 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 61, 161, 467, 491, 515, 671 |
| Bse8I | GATNNNNATC | 1 cut(s) | 306 |
| BseBI | CCWGG | 2 cut(s) | 144, 156 |
| BseDI | CCNNGG | 8 cut(s) | 112, 155, 263, 521, 545, 680, 708, 770 |
| BseGI | GGATG | 2 cut(s) | 49, 108 |
| BseJI | GATNNNNATC | 1 cut(s) | 306 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 61, 161, 467, 491, 515, 671 |
| BseMII | CTCAG | 2 cut(s) | 66, 162 |
| BseYI | CCCAGC | 1 cut(s) | 587 |
| BshFI | GGCC | 6 cut(s) | 117, 496, 520, 544, 592, 769 |
| BshNI | GGYRCC | 1 cut(s) | 505 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 61, 161, 467, 491, 515, 671 |
| BsnI | GGCC | 6 cut(s) | 117, 496, 520, 544, 592, 769 |
| Bsp143I | GATC | 1 cut(s) | 307 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 437 |
| BspACI | CCGC | 1 cut(s) | 377 |
| BspANI | GGCC | 6 cut(s) | 117, 496, 520, 544, 592, 769 |
| BspCNI | CTCAG | 2 cut(s) | 67, 161 |
| BspLI | GGNNCC | 2 cut(s) | 507, 657 |
| BspMI | ACCTGC | 1 cut(s) | 357 |
| BspPI | GGATC | 1 cut(s) | 302 |
| BspT107I | GGYRCC | 1 cut(s) | 505 |
| BssECI | CCNNGG | 8 cut(s) | 112, 155, 263, 521, 545, 680, 708, 770 |
| BssMI | GATC | 1 cut(s) | 307 |
| BssSI | CACGAG | 1 cut(s) | 383 |
| BssT1I | CCWWGG | 7 cut(s) | 112, 263, 521, 545, 680, 708, 770 |
| Bst2BI | CACGAG | 1 cut(s) | 383 |
| Bst2UI | CCWGG | 2 cut(s) | 144, 156 |
| Bst4CI | ACNGT | 2 cut(s) | 210, 832 |
| BstBAI | YACGTR | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 2 cut(s) | 482, 728 |
| BstDEI | CTNAG | 5 cut(s) | 75, 148, 437, 456, 699 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 59 |
| BstF5I | GGATG | 2 cut(s) | 49, 108 |
| BstHHI | GCGC | 1 cut(s) | 354 |
| BstKTI | GATC | 1 cut(s) | 310 |
| BstMBI | GATC | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 833 |
| BstNI | CCWGG | 2 cut(s) | 144, 156 |
| BstNSI | RCATGY | 2 cut(s) | 205, 242 |
| BstSCI | CCNGG | 2 cut(s) | 142, 154 |
| BstSFI | CTRYAG | 3 cut(s) | 56, 174, 828 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| BsuRI | GGCC | 6 cut(s) | 117, 496, 520, 544, 592, 769 |
| BtsCI | GGATG | 2 cut(s) | 49, 108 |
| BveI | ACCTGC | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 2 cut(s) | 482, 728 |
| CaiI | CAGNNNCTG | 1 cut(s) | 781 |
| CfoI | GCGC | 1 cut(s) | 354 |
| Cfr13I | GGNCC | 6 cut(s) | 116, 346, 452, 494, 518, 590 |
| Csp6I | GTAC | 2 cut(s) | 13, 166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 544, 579 |
| CviAII | CATG | 2 cut(s) | 202, 239 |
| CviQI | GTAC | 2 cut(s) | 13, 166 |
| DdeI | CTNAG | 5 cut(s) | 75, 148, 437, 456, 699 |
| DpnI | GATC | 1 cut(s) | 309 |
| DpnII | GATC | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 7 cut(s) | 112, 263, 521, 545, 680, 708, 770 |
| Eco147I | AGGCCT | 1 cut(s) | 769 |
| Eco47I | GGWCC | 2 cut(s) | 346, 452 |
| Eco57I | CTGAAG | 1 cut(s) | 803 |
| Eco72I | CACGTG | 1 cut(s) | 500 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 346 |
| EcoRI | GAATTC | 1 cut(s) | 642 |
| EcoRII | CCWGG | 2 cut(s) | 142, 154 |
| EcoT14I | CCWWGG | 7 cut(s) | 112, 263, 521, 545, 680, 708, 770 |
| ErhI | CCWWGG | 7 cut(s) | 112, 263, 521, 545, 680, 708, 770 |
| FaeI | CATG | 2 cut(s) | 205, 242 |
| FaiI | YATR | 8 cut(s) | 17, 39, 176, 203, 240, 246, 248, 795 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 53, 85 |
| FatI | CATG | 2 cut(s) | 201, 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 378 |
| FokI | GGATG | 2 cut(s) | 56, 95 |
| Fsp4HI | GCNGC | 1 cut(s) | 378 |
| FspBI | CTAG | 2 cut(s) | 510, 771 |
| GlaI | GCGC | 1 cut(s) | 353 |
| GluI | GCNGC | 1 cut(s) | 378 |
| GsaI | CCCAGC | 1 cut(s) | 591 |
| HaeIII | GGCC | 6 cut(s) | 117, 496, 520, 544, 592, 769 |
| HhaI | GCGC | 1 cut(s) | 354 |
| Hin1II | CATG | 2 cut(s) | 205, 242 |
| Hin6I | GCGC | 1 cut(s) | 352 |
| HinP1I | GCGC | 1 cut(s) | 352 |
| HincII | GTYRAC | 2 cut(s) | 199, 556 |
| HindII | GTYRAC | 2 cut(s) | 199, 556 |
| HinfI | GANTC | 2 cut(s) | 26, 191 |
| HphI | GGTGA | 1 cut(s) | 824 |
| Hpy166II | GTNNAC | 4 cut(s) | 199, 532, 556, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 151, 648 |
| Hpy188III | TCNNGA | 1 cut(s) | 311 |
| Hpy8I | GTNNAC | 4 cut(s) | 199, 532, 556, 580 |
| HpyAV | CCTTC | 3 cut(s) | 55, 219, 223 |
| HpyCH4III | ACNGT | 2 cut(s) | 210, 832 |
| HpyCH4IV | ACGT | 1 cut(s) | 499 |
| HpyCH4V | TGCA | 3 cut(s) | 188, 238, 638 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 833 |
| HpyF3I | CTNAG | 5 cut(s) | 75, 148, 437, 456, 699 |
| HpySE526I | ACGT | 1 cut(s) | 499 |
| Hsp92II | CATG | 2 cut(s) | 205, 242 |
| HspAI | GCGC | 1 cut(s) | 352 |
| Kzo9I | GATC | 1 cut(s) | 307 |
| LmnI | GCTCC | 3 cut(s) | 265, 655, 778 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 2 cut(s) | 510, 771 |
| MaeII | ACGT | 1 cut(s) | 499 |
| MaeIII | GTNAC | 3 cut(s) | 104, 204, 332 |
| MalI | GATC | 1 cut(s) | 309 |
| MboI | GATC | 1 cut(s) | 307 |
| MboII | GAAGA | 2 cut(s) | 416, 796 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MluCI | AATT | 3 cut(s) | 82, 397, 642 |
| MmeI | TCCRAC | 1 cut(s) | 430 |
| MnlI | CCTC | 7 cut(s) | 337, 361, 379, 464, 496, 554, 759 |
| MseI | TTAA | 1 cut(s) | 429 |
| MspA1I | CMGCKG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 2 cut(s) | 144, 156 |
| MvaI | CCWGG | 2 cut(s) | 144, 156 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 833 |
| NdeII | GATC | 1 cut(s) | 307 |
| NlaIII | CATG | 2 cut(s) | 205, 242 |
| NlaIV | GGNNCC | 2 cut(s) | 507, 657 |
| NmuCI | GTSAC | 1 cut(s) | 332 |
| NspI | RCATGY | 2 cut(s) | 205, 242 |
| PceI | AGGCCT | 1 cut(s) | 769 |
| PciI | ACATGT | 1 cut(s) | 201 |
| PfeI | GAWTC | 2 cut(s) | 26, 191 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 161, 491, 671 |
| PkrI | GCNGC | 1 cut(s) | 379 |
| PmaCI | CACGTG | 1 cut(s) | 500 |
| PmlI | CACGTG | 1 cut(s) | 500 |
| Ppu21I | YACGTR | 1 cut(s) | 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 346 |
| PscI | ACATGT | 1 cut(s) | 201 |
| Psp5II | RGGWCCY | 1 cut(s) | 346 |
| Psp6I | CCWGG | 2 cut(s) | 142, 154 |
| PspCI | CACGTG | 1 cut(s) | 500 |
| PspFI | CCCAGC | 1 cut(s) | 587 |
| PspGI | CCWGG | 2 cut(s) | 142, 154 |
| PspN4I | GGNNCC | 2 cut(s) | 507, 657 |
| PspPI | GGNCC | 6 cut(s) | 116, 346, 452, 494, 518, 590 |
| PspPPI | RGGWCCY | 1 cut(s) | 346 |
| PstNI | CAGNNNCTG | 1 cut(s) | 781 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| PvuII | CAGCTG | 1 cut(s) | 221 |
| RsaI | GTAC | 2 cut(s) | 14, 167 |
| RsaNI | GTAC | 2 cut(s) | 13, 166 |
| SaqAI | TTAA | 1 cut(s) | 429 |
| SatI | GCNGC | 1 cut(s) | 378 |
| Sau3AI | GATC | 1 cut(s) | 307 |
| Sau96I | GGNCC | 6 cut(s) | 116, 346, 452, 494, 518, 590 |
| ScrFI | CCNGG | 2 cut(s) | 144, 156 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SfcI | CTRYAG | 3 cut(s) | 56, 174, 828 |
| SinI | GGWCC | 2 cut(s) | 346, 452 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| Sse9I | AATT | 3 cut(s) | 82, 397, 642 |
| SseBI | AGGCCT | 1 cut(s) | 769 |
| SsiI | CCGC | 1 cut(s) | 377 |
| SspMI | CTAG | 2 cut(s) | 510, 771 |
| StuI | AGGCCT | 1 cut(s) | 769 |
| StyD4I | CCNGG | 2 cut(s) | 142, 154 |
| StyI | CCWWGG | 7 cut(s) | 112, 263, 521, 545, 680, 708, 770 |
| TaaI | ACNGT | 2 cut(s) | 210, 832 |
| TaiI | ACGT | 1 cut(s) | 502 |
| TasI | AATT | 3 cut(s) | 82, 397, 642 |
| TatI | WGTACW | 1 cut(s) | 12 |
| TauI | GCSGC | 1 cut(s) | 380 |
| TfiI | GAWTC | 2 cut(s) | 26, 191 |
| Tru1I | TTAA | 1 cut(s) | 429 |
| Tru9I | TTAA | 1 cut(s) | 429 |
| TseFI | GTSAC | 1 cut(s) | 332 |
| Tsp45I | GTSAC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 161, 491, 671 |
| VpaK11BI | GGWCC | 2 cut(s) | 346, 452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 642 |
| XceI | RCATGY | 2 cut(s) | 205, 242 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 126, 488 |
| XmaJI | CCTAGG | 1 cut(s) | 770 |
| XspI | CTAG | 2 cut(s) | 510, 771 |