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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 257 |
| Acc36I | ACCTGC | 1 cut(s) | 292 |
| AclWI | GGATC | 5 cut(s) | 197, 225, 390, 766, 901 |
| AcsI | RAATTY | 3 cut(s) | 346, 822, 1036 |
| AcuI | CTGAAG | 1 cut(s) | 221 |
| AcyI | GRCGYC | 1 cut(s) | 1253 |
| AfaI | GTAC | 1 cut(s) | 921 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 95, 474, 916, 1131 |
| AjnI | CCWGG | 1 cut(s) | 533 |
| AluBI | AGCT | 8 cut(s) | 20, 113, 169, 358, 595, 890, 1226, 1265 |
| AluI | AGCT | 8 cut(s) | 20, 113, 169, 358, 595, 890, 1226, 1265 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 4 cut(s) | 595, 671, 723, 1203 |
| AlwI | GGATC | 5 cut(s) | 197, 225, 390, 766, 901 |
| AoxI | GGCC | 2 cut(s) | 1214, 1289 |
| ApeKI | GCWGC | 5 cut(s) | 695, 887, 1160, 1226, 1229 |
| ApoI | RAATTY | 3 cut(s) | 346, 822, 1036 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1181, 1213 |
| AspS9I | GGNCC | 1 cut(s) | 86 |
| AsuC2I | CCSGG | 2 cut(s) | 366, 872 |
| AsuHPI | GGTGA | 2 cut(s) | 223, 601 |
| AvaII | GGWCC | 1 cut(s) | 86 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BanII | GRGCYC | 2 cut(s) | 22, 313 |
| BbsI | GAAGAC | 1 cut(s) | 873 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvCI | CCTCAGC | 2 cut(s) | 738, 932 |
| BbvI | GCAGC | 5 cut(s) | 682, 899, 1147, 1213, 1241 |
| BccI | CCATC | 2 cut(s) | 62, 154 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1176, 1210 |
| BciT130I | CCWGG | 1 cut(s) | 535 |
| BciVI | GTATCC | 1 cut(s) | 629 |
| BcnI | CCSGG | 2 cut(s) | 366, 872 |
| BcoDI | GTCTC | 4 cut(s) | 595, 671, 723, 1203 |
| BfaI | CTAG | 3 cut(s) | 65, 455, 549 |
| BfmI | CTRYAG | 2 cut(s) | 114, 1227 |
| BfuAI | ACCTGC | 1 cut(s) | 292 |
| BfuI | GTATCC | 1 cut(s) | 629 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1169 |
| BisI | GCNGC | 5 cut(s) | 696, 888, 1161, 1227, 1230 |
| BlpI | GCTNAGC | 1 cut(s) | 1239 |
| BlsI | GCNGC | 5 cut(s) | 697, 889, 1162, 1228, 1231 |
| Bme1390I | CCNGG | 3 cut(s) | 366, 535, 872 |
| Bme18I | GGWCC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 86 |
| BmiI | GGNNCC | 1 cut(s) | 87 |
| BmrFI | CCNGG | 3 cut(s) | 366, 535, 872 |
| BmsI | GCATC | 7 cut(s) | 35, 115, 172, 454, 535, 1181, 1217 |
| BpiI | GAAGAC | 1 cut(s) | 873 |
| Bpu10I | CCTNAGC | 3 cut(s) | 657, 738, 932 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 1 cut(s) | 884 |
| BpuMI | CCSGG | 2 cut(s) | 366, 872 |
| BsaHI | GRCGYC | 1 cut(s) | 1253 |
| BsaJI | CCNNGG | 4 cut(s) | 177, 305, 640, 662 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 95, 474, 916, 1131 |
| Bse1I | ACTGG | 2 cut(s) | 823, 1292 |
| Bse3DI | GCAATG | 2 cut(s) | 732, 789 |
| BseBI | CCWGG | 1 cut(s) | 535 |
| BseDI | CCNNGG | 4 cut(s) | 177, 305, 640, 662 |
| BseGI | GGATG | 4 cut(s) | 50, 187, 483, 880 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 95, 474, 916, 1131 |
| BseMI | GCAATG | 2 cut(s) | 732, 789 |
| BseMII | CTCAG | 2 cut(s) | 729, 923 |
| BseNI | ACTGG | 2 cut(s) | 823, 1292 |
| BseRI | GAGGAG | 1 cut(s) | 1061 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseXI | GCAGC | 5 cut(s) | 682, 899, 1147, 1213, 1241 |
| BsgI | GTGCAG | 1 cut(s) | 270 |
| BshFI | GGCC | 2 cut(s) | 1216, 1291 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsiSI | CCGG | 2 cut(s) | 365, 872 |
| BslFI | GGGAC | 4 cut(s) | 99, 287, 824, 1065 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 95, 474, 916, 1131 |
| BsmAI | GTCTC | 4 cut(s) | 595, 671, 723, 1203 |
| BsmBI | CGTCTC | 2 cut(s) | 595, 1203 |
| BsmFI | GGGAC | 4 cut(s) | 99, 287, 824, 1065 |
| BsnI | GGCC | 2 cut(s) | 1216, 1291 |
| Bsp1286I | GDGCHC | 3 cut(s) | 22, 76, 313 |
| Bsp143I | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 640 |
| BspANI | GGCC | 2 cut(s) | 1216, 1291 |
| BspCNI | CTCAG | 2 cut(s) | 730, 924 |
| BspHI | TCATGA | 2 cut(s) | 375, 501 |
| BspLI | GGNNCC | 1 cut(s) | 87 |
| BspMAI | CTGCAG | 1 cut(s) | 1231 |
| BspMI | ACCTGC | 1 cut(s) | 292 |
| BspPI | GGATC | 5 cut(s) | 197, 225, 390, 766, 901 |
| BsrDI | GCAATG | 2 cut(s) | 732, 789 |
| BsrI | ACTGG | 2 cut(s) | 823, 1292 |
| BssECI | CCNNGG | 4 cut(s) | 177, 305, 640, 662 |
| BssMI | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| BssNI | GRCGYC | 1 cut(s) | 1253 |
| BssT1I | CCWWGG | 4 cut(s) | 177, 305, 640, 662 |
| Bst2UI | CCWGG | 1 cut(s) | 535 |
| Bst4CI | ACNGT | 2 cut(s) | 105, 1092 |
| Bst6I | CTCTTC | 3 cut(s) | 288, 854, 1022 |
| BstACI | GRCGYC | 1 cut(s) | 1253 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 125, 1235 |
| BstC8I | GCNNGC | 3 cut(s) | 833, 837, 892 |
| BstDEI | CTNAG | 4 cut(s) | 657, 738, 932, 1239 |
| BstDSI | CCRYGG | 1 cut(s) | 640 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 914 |
| BstF5I | GGATG | 4 cut(s) | 50, 187, 483, 880 |
| BstKTI | GATC | 6 cut(s) | 192, 220, 385, 761, 909, 929 |
| BstMAI | GTCTC | 4 cut(s) | 595, 671, 723, 1203 |
| BstMBI | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 125, 845, 1169, 1235, 1271 |
| BstNI | CCWGG | 1 cut(s) | 535 |
| BstNSI | RCATGY | 2 cut(s) | 795, 839 |
| BstSCI | CCNGG | 3 cut(s) | 364, 533, 870 |
| BstSFI | CTRYAG | 2 cut(s) | 114, 1227 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstV1I | GCAGC | 5 cut(s) | 682, 899, 1147, 1213, 1241 |
| BstV2I | GAAGAC | 1 cut(s) | 873 |
| BstX2I | RGATCY | 3 cut(s) | 189, 217, 906 |
| BstYI | RGATCY | 3 cut(s) | 189, 217, 906 |
| BsuI | GTATCC | 1 cut(s) | 629 |
| BsuRI | GGCC | 2 cut(s) | 1216, 1291 |
| BtgI | CCRYGG | 1 cut(s) | 640 |
| BtgZI | GCGATG | 1 cut(s) | 173 |
| BtsCI | GGATG | 4 cut(s) | 50, 187, 483, 880 |
| BtsI | GCAGTG | 1 cut(s) | 618 |
| BtsIMutI | CAGTG | 1 cut(s) | 618 |
| BveI | ACCTGC | 1 cut(s) | 292 |
| Cac8I | GCNNGC | 3 cut(s) | 833, 837, 892 |
| CciI | TCATGA | 2 cut(s) | 375, 501 |
| Cfr13I | GGNCC | 1 cut(s) | 86 |
| CseI | GACGC | 1 cut(s) | 1261 |
| Csp6I | GTAC | 1 cut(s) | 920 |
| CviQI | GTAC | 1 cut(s) | 920 |
| DdeI | CTNAG | 4 cut(s) | 657, 738, 932, 1239 |
| DpnI | GATC | 6 cut(s) | 191, 219, 384, 760, 908, 928 |
| DpnII | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| Eam1104I | CTCTTC | 3 cut(s) | 288, 854, 1022 |
| EarI | CTCTTC | 3 cut(s) | 288, 854, 1022 |
| Ecl136II | GAGCTC | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 4 cut(s) | 177, 305, 640, 662 |
| Eco147I | AGGCCT | 1 cut(s) | 1216 |
| Eco24I | GRGCYC | 2 cut(s) | 22, 313 |
| Eco47I | GGWCC | 1 cut(s) | 86 |
| Eco53kI | GAGCTC | 1 cut(s) | 20 |
| Eco57I | CTGAAG | 1 cut(s) | 221 |
| EcoICRI | GAGCTC | 1 cut(s) | 20 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 914 |
| EcoO109I | RGGNCCY | 1 cut(s) | 86 |
| EcoRI | GAATTC | 2 cut(s) | 822, 1036 |
| EcoRII | CCWGG | 1 cut(s) | 533 |
| EcoT14I | CCWWGG | 4 cut(s) | 177, 305, 640, 662 |
| EcoT22I | ATGCAT | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 2 cut(s) | 22, 313 |
| ErhI | CCWWGG | 4 cut(s) | 177, 305, 640, 662 |
| Esp3I | CGTCTC | 2 cut(s) | 595, 1203 |
| FaqI | GGGAC | 4 cut(s) | 99, 287, 824, 1065 |
| FauNDI | CATATG | 2 cut(s) | 154, 336 |
| Fnu4HI | GCNGC | 5 cut(s) | 696, 888, 1161, 1227, 1230 |
| FokI | GGATG | 4 cut(s) | 57, 194, 490, 887 |
| FriOI | GRGCYC | 2 cut(s) | 22, 313 |
| Fsp4HI | GCNGC | 5 cut(s) | 696, 888, 1161, 1227, 1230 |
| FspBI | CTAG | 3 cut(s) | 65, 455, 549 |
| GluI | GCNGC | 5 cut(s) | 696, 888, 1161, 1227, 1230 |
| HaeIII | GGCC | 2 cut(s) | 1216, 1291 |
| HapII | CCGG | 2 cut(s) | 365, 872 |
| HgaI | GACGC | 1 cut(s) | 1261 |
| Hin1I | GRCGYC | 1 cut(s) | 1253 |
| HincII | GTYRAC | 1 cut(s) | 745 |
| HindII | GTYRAC | 1 cut(s) | 745 |
| HinfI | GANTC | 1 cut(s) | 775 |
| HpaII | CCGG | 2 cut(s) | 365, 872 |
| HphI | GGTGA | 2 cut(s) | 223, 601 |
| Hpy166II | GTNNAC | 3 cut(s) | 342, 490, 745 |
| Hpy188I | TCNGA | 2 cut(s) | 201, 1063 |
| Hpy188III | TCNNGA | 4 cut(s) | 221, 376, 502, 901 |
| Hpy8I | GTNNAC | 3 cut(s) | 342, 490, 745 |
| Hpy99I | CGWCG | 1 cut(s) | 1255 |
| HpyCH4III | ACNGT | 2 cut(s) | 105, 1092 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 125, 845, 1169, 1235, 1271 |
| HpyF3I | CTNAG | 4 cut(s) | 657, 738, 932, 1239 |
| Hsp92I | GRCGYC | 1 cut(s) | 1253 |
| Kzo9I | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| LmnI | GCTCC | 2 cut(s) | 17, 166 |
| Lsp1109I | GCAGC | 5 cut(s) | 682, 899, 1147, 1213, 1241 |
| LweI | GCATC | 7 cut(s) | 35, 115, 172, 454, 535, 1181, 1217 |
| MaeI | CTAG | 3 cut(s) | 65, 455, 549 |
| MaeIII | GTNAC | 2 cut(s) | 565, 959 |
| MalI | GATC | 6 cut(s) | 191, 219, 384, 760, 908, 928 |
| MboI | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| MboII | GAAGA | 7 cut(s) | 305, 590, 871, 878, 916, 1039, 1045 |
| MfeI | CAATTG | 1 cut(s) | 120 |
| MflI | RGATCY | 3 cut(s) | 189, 217, 906 |
| MhlI | GDGCHC | 3 cut(s) | 22, 76, 313 |
| MluCI | AATT | 7 cut(s) | 120, 346, 581, 822, 943, 1036, 1109 |
| MmeI | TCCRAC | 1 cut(s) | 1161 |
| Mph1103I | ATGCAT | 1 cut(s) | 187 |
| MseI | TTAA | 4 cut(s) | 107, 278, 507, 584 |
| MslI | CAYNNNNRTG | 1 cut(s) | 854 |
| MspI | CCGG | 2 cut(s) | 365, 872 |
| MspR9I | CCNGG | 3 cut(s) | 366, 535, 872 |
| MunI | CAATTG | 1 cut(s) | 120 |
| MvaI | CCWGG | 1 cut(s) | 535 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 125, 845, 1169, 1235, 1271 |
| NciI | CCSGG | 2 cut(s) | 366, 872 |
| NcoI | CCATGG | 1 cut(s) | 640 |
| NdeI | CATATG | 2 cut(s) | 154, 336 |
| NdeII | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| NlaIV | GGNNCC | 1 cut(s) | 87 |
| NmuCI | GTSAC | 2 cut(s) | 565, 959 |
| NsiI | ATGCAT | 1 cut(s) | 187 |
| NspI | RCATGY | 2 cut(s) | 795, 839 |
| PaeI | GCATGC | 1 cut(s) | 839 |
| PagI | TCATGA | 2 cut(s) | 375, 501 |
| PceI | AGGCCT | 1 cut(s) | 1216 |
| PfeI | GAWTC | 1 cut(s) | 775 |
| PfoI | TCCNGGA | 1 cut(s) | 364 |
| PkrI | GCNGC | 5 cut(s) | 697, 889, 1162, 1228, 1231 |
| PpuMI | RGGWCCY | 1 cut(s) | 86 |
| PsiI | TTATAA | 1 cut(s) | 257 |
| Psp124BI | GAGCTC | 1 cut(s) | 22 |
| Psp5II | RGGWCCY | 1 cut(s) | 86 |
| Psp6I | CCWGG | 1 cut(s) | 533 |
| PspGI | CCWGG | 1 cut(s) | 533 |
| PspN4I | GGNNCC | 1 cut(s) | 87 |
| PspPI | GGNCC | 1 cut(s) | 86 |
| PspPPI | RGGWCCY | 1 cut(s) | 86 |
| PstI | CTGCAG | 1 cut(s) | 1231 |
| PsuI | RGATCY | 3 cut(s) | 189, 217, 906 |
| RsaI | GTAC | 1 cut(s) | 921 |
| RsaNI | GTAC | 1 cut(s) | 920 |
| RseI | CAYNNNNRTG | 1 cut(s) | 854 |
| SacI | GAGCTC | 1 cut(s) | 22 |
| SaqAI | TTAA | 4 cut(s) | 107, 278, 507, 584 |
| SatI | GCNGC | 5 cut(s) | 696, 888, 1161, 1227, 1230 |
| Sau3AI | GATC | 6 cut(s) | 189, 217, 382, 758, 906, 926 |
| Sau96I | GGNCC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 3 cut(s) | 366, 535, 872 |
| SduI | GDGCHC | 3 cut(s) | 22, 76, 313 |
| SfaNI | GCATC | 7 cut(s) | 35, 115, 172, 454, 535, 1181, 1217 |
| SfcI | CTRYAG | 2 cut(s) | 114, 1227 |
| SinI | GGWCC | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 854 |
| SmlI | CTYRAG | 1 cut(s) | 899 |
| SmoI | CTYRAG | 1 cut(s) | 899 |
| SphI | GCATGC | 1 cut(s) | 839 |
| Sse9I | AATT | 7 cut(s) | 120, 346, 581, 822, 943, 1036, 1109 |
| SseBI | AGGCCT | 1 cut(s) | 1216 |
| SspI | AATATT | 1 cut(s) | 751 |
| SspMI | CTAG | 3 cut(s) | 65, 455, 549 |
| SstI | GAGCTC | 1 cut(s) | 22 |
| StuI | AGGCCT | 1 cut(s) | 1216 |
| StyD4I | CCNGG | 3 cut(s) | 364, 533, 870 |
| StyI | CCWWGG | 4 cut(s) | 177, 305, 640, 662 |
| TaaI | ACNGT | 2 cut(s) | 105, 1092 |
| TaqI | TCGA | 1 cut(s) | 1250 |
| TasI | AATT | 7 cut(s) | 120, 346, 581, 822, 943, 1036, 1109 |
| TfiI | GAWTC | 1 cut(s) | 775 |
| Tru1I | TTAA | 4 cut(s) | 107, 278, 507, 584 |
| Tru9I | TTAA | 4 cut(s) | 107, 278, 507, 584 |
| TscAI | CASTG | 1 cut(s) | 618 |
| TseFI | GTSAC | 2 cut(s) | 565, 959 |
| TseI | GCWGC | 5 cut(s) | 695, 887, 1160, 1226, 1229 |
| Tsp45I | GTSAC | 2 cut(s) | 565, 959 |
| TspDTI | ATGAA | 7 cut(s) | 249, 392, 416, 452, 461, 872, 1122 |
| TspGWI | ACGGA | 1 cut(s) | 619 |
| TspRI | CASTG | 1 cut(s) | 618 |
| VpaK11BI | GGWCC | 1 cut(s) | 86 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 914 |
| XapI | RAATTY | 3 cut(s) | 346, 822, 1036 |
| XceI | RCATGY | 2 cut(s) | 795, 839 |
| XspI | CTAG | 3 cut(s) | 65, 455, 549 |
| Zsp2I | ATGCAT | 1 cut(s) | 187 |