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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 635 |
| AccI | GTMKAC | 1 cut(s) | 1110 |
| AclWI | GGATC | 6 cut(s) | 577, 912, 1067, 1088, 1271, 1514 |
| AcuI | CTGAAG | 2 cut(s) | 183, 797 |
| AfaI | GTAC | 1 cut(s) | 234 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 635 |
| AflII | CTTAAG | 1 cut(s) | 1082 |
| AflIII | ACRYGT | 1 cut(s) | 1468 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 628 |
| AluBI | AGCT | 7 cut(s) | 356, 728, 787, 995, 1027, 1081, 1328 |
| AluI | AGCT | 7 cut(s) | 356, 728, 787, 995, 1027, 1081, 1328 |
| Alw21I | GWGCWC | 1 cut(s) | 990 |
| Alw26I | GTCTC | 3 cut(s) | 359, 374, 755 |
| Alw44I | GTGCAC | 1 cut(s) | 986 |
| AlwI | GGATC | 6 cut(s) | 577, 912, 1067, 1088, 1271, 1514 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 320 |
| AoxI | GGCC | 3 cut(s) | 625, 972, 1502 |
| ApaI | GGGCCC | 1 cut(s) | 629 |
| ApaLI | GTGCAC | 1 cut(s) | 986 |
| ApeKI | GCWGC | 4 cut(s) | 725, 1013, 1328, 1359 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 868, 900, 1103, 1135 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 2 cut(s) | 625, 626 |
| AsuHPI | GGTGA | 3 cut(s) | 440, 865, 1234 |
| AxyI | CCTNAGG | 1 cut(s) | 1506 |
| BaeGI | GKGCMC | 3 cut(s) | 461, 629, 990 |
| BanII | GRGCYC | 1 cut(s) | 629 |
| BbsI | GAAGAC | 4 cut(s) | 402, 476, 810, 881 |
| Bbv12I | GWGCWC | 1 cut(s) | 990 |
| BbvCI | CCTCAGC | 1 cut(s) | 357 |
| BbvI | GCAGC | 4 cut(s) | 737, 1000, 1315, 1371 |
| BccI | CCATC | 9 cut(s) | 135, 750, 850, 1168, 1213, 1255, 1289, 1434, 1490 |
| BciT130I | CCWGG | 1 cut(s) | 630 |
| BciVI | GTATCC | 1 cut(s) | 1466 |
| BcoDI | GTCTC | 3 cut(s) | 359, 374, 755 |
| BfaI | CTAG | 2 cut(s) | 678, 1531 |
| BfmI | CTRYAG | 3 cut(s) | 1074, 1104, 1412 |
| BfrI | CTTAAG | 1 cut(s) | 1082 |
| BfuI | GTATCC | 1 cut(s) | 1466 |
| BisI | GCNGC | 4 cut(s) | 726, 1014, 1329, 1360 |
| BlsI | GCNGC | 4 cut(s) | 727, 1015, 1330, 1361 |
| Bme1390I | CCNGG | 1 cut(s) | 630 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 2 cut(s) | 625, 626 |
| BmiI | GGNNCC | 3 cut(s) | 312, 627, 1393 |
| BmrFI | CCNGG | 1 cut(s) | 630 |
| BmsI | GCATC | 3 cut(s) | 169, 971, 1120 |
| BpiI | GAAGAC | 4 cut(s) | 402, 476, 810, 881 |
| BpmI | CTGGAG | 3 cut(s) | 297, 1049, 1328 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 1 cut(s) | 1468 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 2 cut(s) | 628, 975 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 752, 782, 1411, 1441 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 635 |
| Bse1I | ACTGG | 3 cut(s) | 158, 314, 510 |
| Bse21I | CCTNAGG | 1 cut(s) | 1506 |
| Bse3DI | GCAATG | 1 cut(s) | 1170 |
| BseBI | CCWGG | 1 cut(s) | 630 |
| BseDI | CCNNGG | 2 cut(s) | 628, 975 |
| BseGI | GGATG | 4 cut(s) | 699, 761, 1135, 1482 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseMI | GCAATG | 1 cut(s) | 1170 |
| BseMII | CTCAG | 6 cut(s) | 311, 348, 627, 636, 779, 1497 |
| BseNI | ACTGG | 3 cut(s) | 158, 314, 510 |
| BseRI | GAGGAG | 8 cut(s) | 467, 542, 572, 602, 1226, 1264, 1404, 1432 |
| BseSI | GKGCMC | 3 cut(s) | 461, 629, 990 |
| BseXI | GCAGC | 4 cut(s) | 737, 1000, 1315, 1371 |
| BseYI | CCCAGC | 1 cut(s) | 424 |
| BshFI | GGCC | 3 cut(s) | 627, 974, 1504 |
| BsiHKAI | GWGCWC | 1 cut(s) | 990 |
| BslFI | GGGAC | 2 cut(s) | 511, 1457 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BsmAI | GTCTC | 3 cut(s) | 359, 374, 755 |
| BsmFI | GGGAC | 2 cut(s) | 511, 1457 |
| BsmI | GAATGC | 1 cut(s) | 1341 |
| BsnI | GGCC | 3 cut(s) | 627, 974, 1504 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| Bsp120I | GGGCCC | 1 cut(s) | 625 |
| Bsp1286I | GDGCHC | 3 cut(s) | 461, 629, 990 |
| BspANI | GGCC | 3 cut(s) | 627, 974, 1504 |
| BspCNI | CTCAG | 6 cut(s) | 310, 349, 626, 637, 780, 1498 |
| BspLI | GGNNCC | 3 cut(s) | 312, 627, 1393 |
| BspPI | GGATC | 6 cut(s) | 577, 912, 1067, 1088, 1271, 1514 |
| BspTI | CTTAAG | 1 cut(s) | 1082 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 1170 |
| BsrI | ACTGG | 3 cut(s) | 158, 314, 510 |
| BssECI | CCNNGG | 2 cut(s) | 628, 975 |
| BssT1I | CCWWGG | 1 cut(s) | 975 |
| Bst2UI | CCWGG | 1 cut(s) | 630 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 256, 866 |
| Bst6I | CTCTTC | 5 cut(s) | 279, 357, 770, 816, 1229 |
| BstAFI | CTTAAG | 1 cut(s) | 1082 |
| BstDEI | CTNAG | 9 cut(s) | 249, 297, 357, 384, 613, 645, 711, 788, 1506 |
| BstF5I | GGATG | 4 cut(s) | 699, 761, 1135, 1482 |
| BstMAI | GTCTC | 3 cut(s) | 359, 374, 755 |
| BstNI | CCWGG | 1 cut(s) | 630 |
| BstNSI | RCATGY | 1 cut(s) | 1472 |
| BstSCI | CCNGG | 1 cut(s) | 628 |
| BstSFI | CTRYAG | 3 cut(s) | 1074, 1104, 1412 |
| BstSLI | GKGCMC | 3 cut(s) | 461, 629, 990 |
| BstV1I | GCAGC | 4 cut(s) | 737, 1000, 1315, 1371 |
| BstV2I | GAAGAC | 4 cut(s) | 402, 476, 810, 881 |
| BstX2I | RGATCY | 1 cut(s) | 1276 |
| BstYI | RGATCY | 1 cut(s) | 1276 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1506 |
| BsuI | GTATCC | 1 cut(s) | 1466 |
| BsuRI | GGCC | 3 cut(s) | 627, 974, 1504 |
| BtsCI | GGATG | 4 cut(s) | 699, 761, 1135, 1482 |
| BtsIMutI | CAGTG | 1 cut(s) | 972 |
| CaiI | CAGNNNCTG | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 2 cut(s) | 625, 626 |
| Csp6I | GTAC | 1 cut(s) | 233 |
| CviAII | CATG | 6 cut(s) | 8, 220, 706, 830, 1246, 1469 |
| CviQI | GTAC | 1 cut(s) | 233 |
| DdeI | CTNAG | 9 cut(s) | 249, 297, 357, 384, 613, 645, 711, 788, 1506 |
| DriI | GACNNNNNGTC | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 5 cut(s) | 279, 357, 770, 816, 1229 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 5 cut(s) | 279, 357, 770, 816, 1229 |
| Eco130I | CCWWGG | 1 cut(s) | 975 |
| Eco147I | AGGCCT | 1 cut(s) | 1504 |
| Eco24I | GRGCYC | 1 cut(s) | 629 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco57I | CTGAAG | 2 cut(s) | 183, 797 |
| Eco81I | CCTNAGG | 1 cut(s) | 1506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 625 |
| EcoRII | CCWGG | 1 cut(s) | 628 |
| EcoT14I | CCWWGG | 1 cut(s) | 975 |
| EcoT38I | GRGCYC | 1 cut(s) | 629 |
| ErhI | CCWWGG | 1 cut(s) | 975 |
| FaeI | CATG | 6 cut(s) | 11, 223, 709, 833, 1249, 1472 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 795, 827 |
| FaqI | GGGAC | 2 cut(s) | 511, 1457 |
| FatI | CATG | 6 cut(s) | 7, 219, 705, 829, 1245, 1468 |
| FblI | GTMKAC | 1 cut(s) | 1110 |
| Fnu4HI | GCNGC | 4 cut(s) | 726, 1014, 1329, 1360 |
| FokI | GGATG | 4 cut(s) | 706, 768, 1142, 1469 |
| FriOI | GRGCYC | 1 cut(s) | 629 |
| Fsp4HI | GCNGC | 4 cut(s) | 726, 1014, 1329, 1360 |
| FspBI | CTAG | 2 cut(s) | 678, 1531 |
| GluI | GCNGC | 4 cut(s) | 726, 1014, 1329, 1360 |
| GsaI | CCCAGC | 1 cut(s) | 428 |
| GsuI | CTGGAG | 3 cut(s) | 297, 1049, 1328 |
| HaeIII | GGCC | 3 cut(s) | 627, 974, 1504 |
| Hin1II | CATG | 6 cut(s) | 11, 223, 709, 833, 1249, 1472 |
| HinfI | GANTC | 8 cut(s) | 15, 101, 289, 578, 938, 1021, 1240, 1303 |
| HphI | GGTGA | 3 cut(s) | 440, 865, 1234 |
| Hpy166II | GTNNAC | 4 cut(s) | 70, 233, 988, 1111 |
| Hpy188I | TCNGA | 9 cut(s) | 186, 202, 245, 583, 616, 657, 816, 909, 1020 |
| Hpy188III | TCNNGA | 4 cut(s) | 320, 644, 1274, 1307 |
| Hpy8I | GTNNAC | 4 cut(s) | 70, 233, 988, 1111 |
| HpyAV | CCTTC | 4 cut(s) | 135, 964, 1003, 1261 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 256, 866 |
| HpyCH4V | TGCA | 5 cut(s) | 687, 848, 988, 1163, 1341 |
| HpyF3I | CTNAG | 9 cut(s) | 249, 297, 357, 384, 613, 645, 711, 788, 1506 |
| Hsp92II | CATG | 6 cut(s) | 11, 223, 709, 833, 1249, 1472 |
| LmnI | GCTCC | 2 cut(s) | 316, 1391 |
| Lsp1109I | GCAGC | 4 cut(s) | 737, 1000, 1315, 1371 |
| LweI | GCATC | 3 cut(s) | 169, 971, 1120 |
| MaeI | CTAG | 2 cut(s) | 678, 1531 |
| MaeIII | GTNAC | 3 cut(s) | 84, 214, 262 |
| MfeI | CAATTG | 1 cut(s) | 501 |
| MflI | RGATCY | 1 cut(s) | 1276 |
| MhlI | GDGCHC | 3 cut(s) | 461, 629, 990 |
| MluCI | AATT | 5 cut(s) | 501, 594, 744, 914, 1319 |
| MlyI | GAGTC | 2 cut(s) | 572, 947 |
| MmeI | TCCRAC | 1 cut(s) | 317 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 1 cut(s) | 1083 |
| MslI | CAYNNNNRTG | 1 cut(s) | 843 |
| MspA1I | CMGCKG | 1 cut(s) | 1027 |
| MspCI | CTTAAG | 1 cut(s) | 1082 |
| MspR9I | CCNGG | 1 cut(s) | 630 |
| MunI | CAATTG | 1 cut(s) | 501 |
| Mva1269I | GAATGC | 1 cut(s) | 1341 |
| MvaI | CCWGG | 1 cut(s) | 630 |
| NlaIII | CATG | 6 cut(s) | 11, 223, 709, 833, 1249, 1472 |
| NlaIV | GGNNCC | 3 cut(s) | 312, 627, 1393 |
| NmuCI | GTSAC | 3 cut(s) | 84, 214, 262 |
| NspI | RCATGY | 1 cut(s) | 1472 |
| PceI | AGGCCT | 1 cut(s) | 1504 |
| PciI | ACATGT | 1 cut(s) | 1468 |
| PctI | GAATGC | 1 cut(s) | 1341 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 6 cut(s) | 15, 101, 289, 1021, 1240, 1303 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 635 |
| PkrI | GCNGC | 4 cut(s) | 727, 1015, 1330, 1361 |
| PleI | GAGTC | 2 cut(s) | 572, 946 |
| PpsI | GAGTC | 2 cut(s) | 572, 946 |
| PscI | ACATGT | 1 cut(s) | 1468 |
| Psp6I | CCWGG | 1 cut(s) | 628 |
| PspFI | CCCAGC | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 628 |
| PspN4I | GGNNCC | 3 cut(s) | 312, 627, 1393 |
| PspOMI | GGGCCC | 1 cut(s) | 625 |
| PspPI | GGNCC | 2 cut(s) | 625, 626 |
| PstNI | CAGNNNCTG | 1 cut(s) | 320 |
| PsuI | RGATCY | 1 cut(s) | 1276 |
| PvuII | CAGCTG | 1 cut(s) | 1027 |
| RsaI | GTAC | 1 cut(s) | 234 |
| RsaNI | GTAC | 1 cut(s) | 233 |
| RseI | CAYNNNNRTG | 1 cut(s) | 843 |
| SaqAI | TTAA | 1 cut(s) | 1083 |
| SatI | GCNGC | 4 cut(s) | 726, 1014, 1329, 1360 |
| Sau96I | GGNCC | 2 cut(s) | 625, 626 |
| SchI | GAGTC | 2 cut(s) | 572, 947 |
| ScrFI | CCNGG | 1 cut(s) | 630 |
| SduI | GDGCHC | 3 cut(s) | 461, 629, 990 |
| SfaNI | GCATC | 3 cut(s) | 169, 971, 1120 |
| SfcI | CTRYAG | 3 cut(s) | 1074, 1104, 1412 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 843 |
| SmlI | CTYRAG | 2 cut(s) | 1082, 1447 |
| SmoI | CTYRAG | 2 cut(s) | 1082, 1447 |
| Sse9I | AATT | 5 cut(s) | 501, 594, 744, 914, 1319 |
| SseBI | AGGCCT | 1 cut(s) | 1504 |
| SspMI | CTAG | 2 cut(s) | 678, 1531 |
| StuI | AGGCCT | 1 cut(s) | 1504 |
| StyD4I | CCNGG | 1 cut(s) | 628 |
| StyI | CCWWGG | 1 cut(s) | 975 |
| TaaI | ACNGT | 3 cut(s) | 214, 256, 866 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 5 cut(s) | 501, 594, 744, 914, 1319 |
| TfiI | GAWTC | 6 cut(s) | 15, 101, 289, 1021, 1240, 1303 |
| Tru1I | TTAA | 1 cut(s) | 1083 |
| Tru9I | TTAA | 1 cut(s) | 1083 |
| TscAI | CASTG | 1 cut(s) | 972 |
| TseFI | GTSAC | 3 cut(s) | 84, 214, 262 |
| TseI | GCWGC | 4 cut(s) | 725, 1013, 1328, 1359 |
| Tsp45I | GTSAC | 3 cut(s) | 84, 214, 262 |
| TspDTI | ATGAA | 4 cut(s) | 186, 710, 737, 1247 |
| TspRI | CASTG | 1 cut(s) | 972 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 635 |
| Vha464I | CTTAAG | 1 cut(s) | 1082 |
| VneI | GTGCAC | 1 cut(s) | 986 |
| XceI | RCATGY | 1 cut(s) | 1472 |
| XmiI | GTMKAC | 1 cut(s) | 1110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 2 cut(s) | 678, 1531 |