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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 563 |
| AarI | CACCTGC | 1 cut(s) | 1006 |
| Acc36I | ACCTGC | 2 cut(s) | 1006, 2503 |
| Acc65I | GGTACC | 1 cut(s) | 1785 |
| AccB1I | GGYRCC | 4 cut(s) | 226, 355, 994, 1785 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 854, 899, 944, 1061 |
| AciI | CCGC | 1 cut(s) | 923 |
| AclWI | GGATC | 5 cut(s) | 104, 117, 162, 2030, 2043 |
| AcoI | YGGCCR | 1 cut(s) | 1488 |
| AcsI | RAATTY | 4 cut(s) | 565, 1228, 1284, 2345 |
| AcuI | CTGAAG | 3 cut(s) | 360, 759, 1211 |
| AdeI | CACNNNGTG | 1 cut(s) | 1007 |
| AfaI | GTAC | 9 cut(s) | 46, 164, 302, 1326, 1478, 1787, 1919, 1990, 2419 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AflIII | ACRYGT | 2 cut(s) | 2414, 2420 |
| AjiI | CACGTC | 1 cut(s) | 1564 |
| AjnI | CCWGG | 5 cut(s) | 149, 675, 1338, 1522, 1942 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1044, 1076, 1382, 1414 |
| AleI | CACNNNNGTG | 1 cut(s) | 15 |
| AlwI | GGATC | 5 cut(s) | 104, 117, 162, 2030, 2043 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 338, 1902, 2032, 2495 |
| Ama87I | CYCGRG | 1 cut(s) | 1675 |
| ApoI | RAATTY | 4 cut(s) | 565, 1228, 1284, 2345 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1391 |
| Asp718I | GGTACC | 1 cut(s) | 1785 |
| AspA2I | CCTAGG | 2 cut(s) | 1199, 2276 |
| AsuC2I | CCSGG | 2 cut(s) | 1676, 1677 |
| AsuHPI | GGTGA | 6 cut(s) | 413, 691, 1282, 1283, 2354, 2585 |
| AvaI | CYCGRG | 1 cut(s) | 1675 |
| AvaII | GGWCC | 1 cut(s) | 649 |
| AvrII | CCTAGG | 2 cut(s) | 1199, 2276 |
| AxyI | CCTNAGG | 1 cut(s) | 804 |
| BalI | TGGCCA | 1 cut(s) | 1490 |
| BamHI | GGATCC | 2 cut(s) | 109, 2035 |
| BanI | GGYRCC | 4 cut(s) | 226, 355, 994, 1785 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1910, 1942 |
| BbvCI | CCTCAGC | 1 cut(s) | 1746 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 644, 678 |
| BciT130I | CCWGG | 5 cut(s) | 151, 677, 1340, 1524, 1944 |
| BcnI | CCSGG | 2 cut(s) | 1676, 1677 |
| BfaI | CTAG | 9 cut(s) | 66, 98, 285, 1068, 1146, 1200, 1964, 2277, 2529 |
| BfmI | CTRYAG | 3 cut(s) | 786, 966, 1627 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BfuAI | ACCTGC | 2 cut(s) | 1006, 2503 |
| BglII | AGATCT | 2 cut(s) | 734, 1186 |
| BlnI | CCTAGG | 2 cut(s) | 1199, 2276 |
| Bme1390I | CCNGG | 7 cut(s) | 151, 677, 1340, 1524, 1676, 1677, 1944 |
| Bme18I | GGWCC | 1 cut(s) | 649 |
| BmeT110I | CYCGRG | 1 cut(s) | 1675 |
| BmgBI | CACGTC | 1 cut(s) | 1564 |
| BmiI | GGNNCC | 7 cut(s) | 111, 228, 357, 651, 996, 1787, 2037 |
| BmrFI | CCNGG | 7 cut(s) | 151, 677, 1340, 1524, 1676, 1677, 1944 |
| BmsI | GCATC | 9 cut(s) | 232, 238, 722, 767, 1696, 1948, 1963, 2013, 2511 |
| BpmI | CTGGAG | 1 cut(s) | 2385 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1317, 1746, 2169 |
| BpuEI | CTTGAG | 3 cut(s) | 1408, 2216, 2422 |
| BpuMI | CCSGG | 2 cut(s) | 1676, 1677 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2067 |
| BsaJI | CCNNGG | 7 cut(s) | 13, 150, 200, 1199, 1522, 1675, 2276 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 516, 546, 1320, 1350, 2326, 2356 |
| Bse1I | ACTGG | 3 cut(s) | 313, 403, 2368 |
| Bse21I | CCTNAGG | 1 cut(s) | 804 |
| Bse3DI | GCAATG | 3 cut(s) | 220, 1728, 2604 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2067 |
| BseBI | CCWGG | 5 cut(s) | 151, 677, 1340, 1524, 1944 |
| BseDI | CCNNGG | 7 cut(s) | 13, 150, 200, 1199, 1522, 1675, 2276 |
| BseJI | GATNNNNATC | 1 cut(s) | 2067 |
| BseMI | GCAATG | 3 cut(s) | 220, 1728, 2604 |
| BseMII | CTCAG | 6 cut(s) | 708, 795, 900, 1331, 1502, 1737 |
| BseNI | ACTGG | 3 cut(s) | 313, 403, 2368 |
| BseRI | GAGGAG | 4 cut(s) | 334, 337, 734, 1582 |
| BsgI | GTGCAG | 4 cut(s) | 626, 897, 984, 1433 |
| BshNI | GGYRCC | 4 cut(s) | 226, 355, 994, 1785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1675 |
| BsiSI | CCGG | 2 cut(s) | 38, 1676 |
| BslFI | GGGAC | 4 cut(s) | 635, 1473, 1574, 2535 |
| BsmFI | GGGAC | 4 cut(s) | 635, 1473, 1574, 2535 |
| BsoBI | CYCGRG | 1 cut(s) | 1675 |
| Bsp1407I | TGTACA | 3 cut(s) | 300, 1917, 2417 |
| Bsp143I | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| Bsp19I | CCATGG | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 923 |
| BspCNI | CTCAG | 6 cut(s) | 709, 796, 901, 1330, 1503, 1738 |
| BspLI | GGNNCC | 7 cut(s) | 111, 228, 357, 651, 996, 1787, 2037 |
| BspMAI | CTGCAG | 3 cut(s) | 790, 970, 1631 |
| BspMI | ACCTGC | 2 cut(s) | 1006, 2503 |
| BspPI | GGATC | 5 cut(s) | 104, 117, 162, 2030, 2043 |
| BspQI | GCTCTTC | 2 cut(s) | 738, 762 |
| BspT107I | GGYRCC | 4 cut(s) | 226, 355, 994, 1785 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrDI | GCAATG | 3 cut(s) | 220, 1728, 2604 |
| BsrGI | TGTACA | 3 cut(s) | 300, 1917, 2417 |
| BsrI | ACTGG | 3 cut(s) | 313, 403, 2368 |
| BssECI | CCNNGG | 7 cut(s) | 13, 150, 200, 1199, 1522, 1675, 2276 |
| BssMI | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| BssT1I | CCWWGG | 4 cut(s) | 13, 200, 1199, 2276 |
| Bst2UI | CCWGG | 5 cut(s) | 151, 677, 1340, 1524, 1944 |
| Bst4CI | ACNGT | 6 cut(s) | 955, 1239, 1534, 1686, 1904, 2549 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2495 |
| BstAUI | TGTACA | 3 cut(s) | 300, 1917, 2417 |
| BstC8I | GCNNGC | 7 cut(s) | 552, 790, 970, 1488, 1492, 1603, 1631 |
| BstDEI | CTNAG | 8 cut(s) | 638, 717, 804, 909, 1317, 1511, 1746, 2169 |
| BstDSI | CCRYGG | 1 cut(s) | 13 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 388 |
| BstKTI | GATC | 7 cut(s) | 112, 157, 737, 1189, 1542, 1985, 2038 |
| BstMBI | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 710, 1611, 2468, 2495 |
| BstNI | CCWGG | 5 cut(s) | 151, 677, 1340, 1524, 1944 |
| BstNSI | RCATGY | 3 cut(s) | 2393, 2418, 2424 |
| BstSCI | CCNGG | 7 cut(s) | 149, 675, 1338, 1522, 1674, 1675, 1942 |
| BstSFI | CTRYAG | 3 cut(s) | 786, 966, 1627 |
| BstX2I | RGATCY | 5 cut(s) | 109, 154, 734, 1186, 2035 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2046, 2079 |
| BstYI | RGATCY | 5 cut(s) | 109, 154, 734, 1186, 2035 |
| Bsu36I | CCTNAGG | 1 cut(s) | 804 |
| BtgI | CCRYGG | 1 cut(s) | 13 |
| BtrI | CACGTC | 1 cut(s) | 1564 |
| BtsI | GCAGTG | 1 cut(s) | 2057 |
| BtsIMutI | CAGTG | 5 cut(s) | 301, 1539, 1758, 1900, 2057 |
| BveI | ACCTGC | 2 cut(s) | 1006, 2503 |
| Cac8I | GCNNGC | 7 cut(s) | 552, 790, 970, 1488, 1492, 1603, 1631 |
| CaiI | CAGNNNCTG | 4 cut(s) | 338, 1902, 2032, 2495 |
| Cfr9I | CCCGGG | 1 cut(s) | 1675 |
| Csp6I | GTAC | 9 cut(s) | 45, 163, 301, 1325, 1477, 1786, 1918, 1989, 2418 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 64, 99 |
| CviQI | GTAC | 9 cut(s) | 45, 163, 301, 1325, 1477, 1786, 1918, 1989, 2418 |
| DdeI | CTNAG | 8 cut(s) | 638, 717, 804, 909, 1317, 1511, 1746, 2169 |
| DpnI | GATC | 7 cut(s) | 111, 156, 736, 1188, 1541, 1984, 2037 |
| DpnII | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| DraIII | CACNNNGTG | 1 cut(s) | 1007 |
| EaeI | YGGCCR | 1 cut(s) | 1488 |
| Eco130I | CCWWGG | 4 cut(s) | 13, 200, 1199, 2276 |
| Eco147I | AGGCCT | 1 cut(s) | 1953 |
| Eco47I | GGWCC | 1 cut(s) | 649 |
| Eco57I | CTGAAG | 3 cut(s) | 360, 759, 1211 |
| Eco81I | CCTNAGG | 1 cut(s) | 804 |
| Eco88I | CYCGRG | 1 cut(s) | 1675 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 388 |
| EcoRII | CCWGG | 5 cut(s) | 149, 675, 1338, 1522, 1942 |
| EcoT14I | CCWWGG | 4 cut(s) | 13, 200, 1199, 2276 |
| ErhI | CCWWGG | 4 cut(s) | 13, 200, 1199, 2276 |
| FaqI | GGGAC | 4 cut(s) | 635, 1473, 1574, 2535 |
| FauNDI | CATATG | 3 cut(s) | 1914, 2013, 2465 |
| FspBI | CTAG | 9 cut(s) | 66, 98, 285, 1068, 1146, 1200, 1964, 2277, 2529 |
| GsuI | CTGGAG | 1 cut(s) | 2385 |
| HapII | CCGG | 2 cut(s) | 38, 1676 |
| HpaII | CCGG | 2 cut(s) | 38, 1676 |
| HphI | GGTGA | 6 cut(s) | 413, 691, 1282, 1283, 2354, 2585 |
| Hpy166II | GTNNAC | 3 cut(s) | 301, 1273, 2398 |
| Hpy188I | TCNGA | 7 cut(s) | 577, 718, 739, 1191, 1234, 1374, 2099 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 139, 193, 866, 1124, 1319, 1384, 1543, 2060 |
| Hpy8I | GTNNAC | 3 cut(s) | 301, 1273, 2398 |
| HpyCH4III | ACNGT | 6 cut(s) | 955, 1239, 1534, 1686, 1904, 2549 |
| HpyCH4IV | ACGT | 1 cut(s) | 1563 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 710, 1611, 2468, 2495 |
| HpyF3I | CTNAG | 8 cut(s) | 638, 717, 804, 909, 1317, 1511, 1746, 2169 |
| HpySE526I | ACGT | 1 cut(s) | 1563 |
| KpnI | GGTACC | 1 cut(s) | 1789 |
| Kzo9I | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| LguI | GCTCTTC | 2 cut(s) | 738, 762 |
| LmnI | GCTCC | 3 cut(s) | 421, 689, 1356 |
| LweI | GCATC | 9 cut(s) | 232, 238, 722, 767, 1696, 1948, 1963, 2013, 2511 |
| MaeI | CTAG | 9 cut(s) | 66, 98, 285, 1068, 1146, 1200, 1964, 2277, 2529 |
| MaeII | ACGT | 1 cut(s) | 1563 |
| MaeIII | GTNAC | 5 cut(s) | 20, 394, 641, 1289, 1655 |
| MalI | GATC | 7 cut(s) | 111, 156, 736, 1188, 1541, 1984, 2037 |
| MboI | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| MfeI | CAATTG | 1 cut(s) | 2435 |
| MflI | RGATCY | 5 cut(s) | 109, 154, 734, 1186, 2035 |
| MlsI | TGGCCA | 1 cut(s) | 1490 |
| MluNI | TGGCCA | 1 cut(s) | 1490 |
| MlyI | GAGTC | 4 cut(s) | 454, 926, 1082, 2150 |
| MmeI | TCCRAC | 4 cut(s) | 87, 234, 1151, 1626 |
| Mox20I | TGGCCA | 1 cut(s) | 1490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1391 |
| MscI | TGGCCA | 1 cut(s) | 1490 |
| MseI | TTAA | 9 cut(s) | 264, 279, 452, 513, 1011, 1637, 1662, 2148, 2283 |
| MslI | CAYNNNNRTG | 6 cut(s) | 15, 1771, 2016, 2044, 2050, 2419 |
| Msp20I | TGGCCA | 1 cut(s) | 1490 |
| MspA1I | CMGCKG | 2 cut(s) | 554, 2032 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspI | CCGG | 2 cut(s) | 38, 1676 |
| MspR9I | CCNGG | 7 cut(s) | 151, 677, 1340, 1524, 1676, 1677, 1944 |
| MunI | CAATTG | 1 cut(s) | 2435 |
| MvaI | CCWGG | 5 cut(s) | 151, 677, 1340, 1524, 1944 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 710, 1611, 2468, 2495 |
| NciI | CCSGG | 2 cut(s) | 1676, 1677 |
| NcoI | CCATGG | 1 cut(s) | 13 |
| NdeI | CATATG | 3 cut(s) | 1914, 2013, 2465 |
| NdeII | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| NlaIV | GGNNCC | 7 cut(s) | 111, 228, 357, 651, 996, 1787, 2037 |
| NmuCI | GTSAC | 3 cut(s) | 641, 1289, 1655 |
| NspI | RCATGY | 3 cut(s) | 2393, 2418, 2424 |
| OliI | CACNNNNGTG | 1 cut(s) | 15 |
| PaqCI | CACCTGC | 1 cut(s) | 1006 |
| PceI | AGGCCT | 1 cut(s) | 1953 |
| PciI | ACATGT | 2 cut(s) | 2414, 2420 |
| PciSI | GCTCTTC | 2 cut(s) | 738, 762 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1391 |
| PfeI | GAWTC | 9 cut(s) | 69, 196, 271, 379, 572, 1369, 1763, 1817, 2068 |
| PflFI | GACNNNGTC | 1 cut(s) | 647 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 854, 899, 944, 1061 |
| PfoI | TCCNGGA | 1 cut(s) | 1942 |
| PleI | GAGTC | 4 cut(s) | 453, 925, 1081, 2149 |
| PpsI | GAGTC | 4 cut(s) | 453, 925, 1081, 2149 |
| PscI | ACATGT | 2 cut(s) | 2414, 2420 |
| PsiI | TTATAA | 1 cut(s) | 563 |
| Psp6I | CCWGG | 5 cut(s) | 149, 675, 1338, 1522, 1942 |
| PspGI | CCWGG | 5 cut(s) | 149, 675, 1338, 1522, 1942 |
| PspN4I | GGNNCC | 7 cut(s) | 111, 228, 357, 651, 996, 1787, 2037 |
| PstI | CTGCAG | 3 cut(s) | 790, 970, 1631 |
| PstNI | CAGNNNCTG | 4 cut(s) | 338, 1902, 2032, 2495 |
| PsuI | RGATCY | 5 cut(s) | 109, 154, 734, 1186, 2035 |
| PsyI | GACNNNGTC | 1 cut(s) | 647 |
| PvuII | CAGCTG | 2 cut(s) | 554, 2032 |
| RsaI | GTAC | 9 cut(s) | 46, 164, 302, 1326, 1478, 1787, 1919, 1990, 2419 |
| RsaNI | GTAC | 9 cut(s) | 45, 163, 301, 1325, 1477, 1786, 1918, 1989, 2418 |
| RseI | CAYNNNNRTG | 6 cut(s) | 15, 1771, 2016, 2044, 2050, 2419 |
| SapI | GCTCTTC | 2 cut(s) | 738, 762 |
| SaqAI | TTAA | 9 cut(s) | 264, 279, 452, 513, 1011, 1637, 1662, 2148, 2283 |
| Sau3AI | GATC | 7 cut(s) | 109, 154, 734, 1186, 1539, 1982, 2035 |
| SchI | GAGTC | 4 cut(s) | 454, 926, 1082, 2150 |
| ScrFI | CCNGG | 7 cut(s) | 151, 677, 1340, 1524, 1676, 1677, 1944 |
| SfaNI | GCATC | 9 cut(s) | 232, 238, 722, 767, 1696, 1948, 1963, 2013, 2511 |
| SfcI | CTRYAG | 3 cut(s) | 786, 966, 1627 |
| SinI | GGWCC | 1 cut(s) | 649 |
| SmaI | CCCGGG | 1 cut(s) | 1677 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 15, 1771, 2016, 2044, 2050, 2419 |
| SmlI | CTYRAG | 4 cut(s) | 278, 1423, 2195, 2401 |
| SmoI | CTYRAG | 4 cut(s) | 278, 1423, 2195, 2401 |
| SseBI | AGGCCT | 1 cut(s) | 1953 |
| SsiI | CCGC | 1 cut(s) | 923 |
| SspI | AATATT | 1 cut(s) | 2184 |
| SspMI | CTAG | 9 cut(s) | 66, 98, 285, 1068, 1146, 1200, 1964, 2277, 2529 |
| StuI | AGGCCT | 1 cut(s) | 1953 |
| StyD4I | CCNGG | 7 cut(s) | 149, 675, 1338, 1522, 1674, 1675, 1942 |
| StyI | CCWWGG | 4 cut(s) | 13, 200, 1199, 2276 |
| TaaI | ACNGT | 6 cut(s) | 955, 1239, 1534, 1686, 1904, 2549 |
| TaiI | ACGT | 1 cut(s) | 1566 |
| TaqI | TCGA | 1 cut(s) | 696 |
| TaqII | GACCGA | 1 cut(s) | 1562 |
| TatI | WGTACW | 5 cut(s) | 300, 1476, 1917, 1988, 2417 |
| TauI | GCSGC | 1 cut(s) | 926 |
| TfiI | GAWTC | 9 cut(s) | 69, 196, 271, 379, 572, 1369, 1763, 1817, 2068 |
| Tru1I | TTAA | 9 cut(s) | 264, 279, 452, 513, 1011, 1637, 1662, 2148, 2283 |
| Tru9I | TTAA | 9 cut(s) | 264, 279, 452, 513, 1011, 1637, 1662, 2148, 2283 |
| TscAI | CASTG | 5 cut(s) | 301, 1539, 1765, 1907, 2057 |
| TseFI | GTSAC | 3 cut(s) | 641, 1289, 1655 |
| Tsp45I | GTSAC | 3 cut(s) | 641, 1289, 1655 |
| TspMI | CCCGGG | 1 cut(s) | 1675 |
| TspRI | CASTG | 5 cut(s) | 301, 1539, 1765, 1907, 2057 |
| Tth111I | GACNNNGTC | 1 cut(s) | 647 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 854, 899, 944, 1061 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 1 cut(s) | 649 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 388 |
| XapI | RAATTY | 4 cut(s) | 565, 1228, 1284, 2345 |
| XceI | RCATGY | 3 cut(s) | 2393, 2418, 2424 |
| XmaI | CCCGGG | 1 cut(s) | 1675 |
| XmaJI | CCTAGG | 2 cut(s) | 1199, 2276 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1391 |
| XspI | CTAG | 9 cut(s) | 66, 98, 285, 1068, 1146, 1200, 1964, 2277, 2529 |