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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 156 |
| AciI | CCGC | 1 cut(s) | 519 |
| AclWI | GGATC | 3 cut(s) | 210, 497, 608 |
| AcsI | RAATTY | 3 cut(s) | 71, 189, 548 |
| AcuI | CTGAAG | 2 cut(s) | 314, 840 |
| AfaI | GTAC | 1 cut(s) | 329 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 356, 371 |
| AflII | CTTAAG | 1 cut(s) | 481 |
| AgsI | TTSAA | 6 cut(s) | 137, 209, 325, 467, 637, 898 |
| AhlI | ACTAGT | 1 cut(s) | 874 |
| AjnI | CCWGG | 2 cut(s) | 349, 364 |
| AluBI | AGCT | 4 cut(s) | 112, 218, 292, 565 |
| AluI | AGCT | 4 cut(s) | 112, 218, 292, 565 |
| Alw26I | GTCTC | 3 cut(s) | 83, 351, 824 |
| AlwI | GGATC | 3 cut(s) | 210, 497, 608 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 4 cut(s) | 26, 62, 112, 675 |
| ApoI | RAATTY | 3 cut(s) | 71, 189, 548 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 726 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 208 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| BbvI | GCAGC | 4 cut(s) | 13, 49, 99, 687 |
| BccI | CCATC | 1 cut(s) | 729 |
| BceAI | ACGGC | 1 cut(s) | 167 |
| BciT130I | CCWGG | 2 cut(s) | 351, 366 |
| BciVI | GTATCC | 1 cut(s) | 463 |
| BcoDI | GTCTC | 3 cut(s) | 83, 351, 824 |
| BcuI | ACTAGT | 1 cut(s) | 874 |
| BfaI | CTAG | 3 cut(s) | 104, 732, 875 |
| BfrI | CTTAAG | 1 cut(s) | 481 |
| BfuI | GTATCC | 1 cut(s) | 463 |
| BglII | AGATCT | 2 cut(s) | 100, 259 |
| BisI | GCNGC | 5 cut(s) | 27, 63, 113, 519, 676 |
| BlsI | GCNGC | 5 cut(s) | 28, 64, 114, 520, 677 |
| BmcAI | AGTACT | 1 cut(s) | 329 |
| Bme1390I | CCNGG | 2 cut(s) | 351, 366 |
| BmrFI | CCNGG | 2 cut(s) | 351, 366 |
| BmsI | GCATC | 3 cut(s) | 294, 526, 687 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BpmI | CTGGAG | 1 cut(s) | 333 |
| BpuEI | CTTGAG | 4 cut(s) | 51, 113, 299, 651 |
| BsaAI | YACGTR | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 45, 183 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 356, 371 |
| Bse1I | ACTGG | 1 cut(s) | 841 |
| BseBI | CCWGG | 2 cut(s) | 351, 366 |
| BseDI | CCNNGG | 3 cut(s) | 30, 45, 183 |
| BseGI | GGATG | 2 cut(s) | 247, 541 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 356, 371 |
| BseNI | ACTGG | 1 cut(s) | 841 |
| BseXI | GCAGC | 4 cut(s) | 13, 49, 99, 687 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 356, 371 |
| BsmAI | GTCTC | 3 cut(s) | 83, 351, 824 |
| BsmI | GAATGC | 1 cut(s) | 366 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bsp143I | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| BspACI | CCGC | 1 cut(s) | 519 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspPI | GGATC | 3 cut(s) | 210, 497, 608 |
| BspQI | GCTCTTC | 2 cut(s) | 555, 816 |
| BspTI | CTTAAG | 1 cut(s) | 481 |
| BsrI | ACTGG | 1 cut(s) | 841 |
| BssECI | CCNNGG | 3 cut(s) | 30, 45, 183 |
| BssMI | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| Bst2UI | CCWGG | 2 cut(s) | 351, 366 |
| Bst4CI | ACNGT | 2 cut(s) | 345, 655 |
| Bst6I | CTCTTC | 4 cut(s) | 555, 632, 732, 816 |
| BstAFI | CTTAAG | 1 cut(s) | 481 |
| BstBAI | YACGTR | 1 cut(s) | 252 |
| BstDEI | CTNAG | 2 cut(s) | 146, 411 |
| BstDSI | CCRYGG | 1 cut(s) | 183 |
| BstF5I | GGATG | 2 cut(s) | 247, 541 |
| BstKTI | GATC | 6 cut(s) | 103, 205, 262, 492, 616, 849 |
| BstMAI | GTCTC | 3 cut(s) | 83, 351, 824 |
| BstMBI | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 224 |
| BstNI | CCWGG | 2 cut(s) | 351, 366 |
| BstSCI | CCNGG | 2 cut(s) | 349, 364 |
| BstSNI | TACGTA | 1 cut(s) | 252 |
| BstV1I | GCAGC | 4 cut(s) | 13, 49, 99, 687 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BstX2I | RGATCY | 5 cut(s) | 100, 202, 259, 489, 613 |
| BstYI | RGATCY | 5 cut(s) | 100, 202, 259, 489, 613 |
| BsuI | GTATCC | 1 cut(s) | 463 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtgI | CCRYGG | 1 cut(s) | 183 |
| BtsCI | GGATG | 2 cut(s) | 247, 541 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CseI | GACGC | 1 cut(s) | 276 |
| Csp6I | GTAC | 1 cut(s) | 328 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 445, 480 |
| CviAII | CATG | 3 cut(s) | 404, 431, 718 |
| CviQI | GTAC | 1 cut(s) | 328 |
| DdeI | CTNAG | 2 cut(s) | 146, 411 |
| DpnI | GATC | 6 cut(s) | 102, 204, 261, 491, 615, 848 |
| DpnII | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| DraI | TTTAAA | 1 cut(s) | 94 |
| Eam1104I | CTCTTC | 4 cut(s) | 555, 632, 732, 816 |
| EarI | CTCTTC | 4 cut(s) | 555, 632, 732, 816 |
| Eco105I | TACGTA | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 840 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 2 cut(s) | 349, 364 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaeI | CATG | 3 cut(s) | 407, 434, 721 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 464, 496 |
| FatI | CATG | 3 cut(s) | 403, 430, 717 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 63, 113, 519, 676 |
| FokI | GGATG | 2 cut(s) | 254, 548 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 63, 113, 519, 676 |
| FspBI | CTAG | 3 cut(s) | 104, 732, 875 |
| GluI | GCNGC | 5 cut(s) | 27, 63, 113, 519, 676 |
| GsuI | CTGGAG | 1 cut(s) | 333 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| HgaI | GACGC | 1 cut(s) | 276 |
| Hin1II | CATG | 3 cut(s) | 407, 434, 721 |
| HincII | GTYRAC | 2 cut(s) | 157, 651 |
| HindII | GTYRAC | 2 cut(s) | 157, 651 |
| HinfI | GANTC | 4 cut(s) | 133, 407, 497, 805 |
| HpaI | GTTAAC | 1 cut(s) | 651 |
| HphI | GGTGA | 2 cut(s) | 61, 208 |
| Hpy166II | GTNNAC | 3 cut(s) | 157, 651, 869 |
| Hpy188I | TCNGA | 4 cut(s) | 266, 557, 757, 820 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 130, 206, 316, 404, 472, 617, 898 |
| Hpy8I | GTNNAC | 3 cut(s) | 157, 651, 869 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 270 |
| HpyAV | CCTTC | 2 cut(s) | 193, 593 |
| HpyCH4III | ACNGT | 2 cut(s) | 345, 655 |
| HpyCH4IV | ACGT | 2 cut(s) | 251, 600 |
| HpyCH4V | TGCA | 2 cut(s) | 307, 710 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 224 |
| HpyF3I | CTNAG | 2 cut(s) | 146, 411 |
| HpySE526I | ACGT | 2 cut(s) | 251, 600 |
| Hsp92II | CATG | 3 cut(s) | 407, 434, 721 |
| KspAI | GTTAAC | 1 cut(s) | 651 |
| Kzo9I | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| LguI | GCTCTTC | 2 cut(s) | 555, 816 |
| LmnI | GCTCC | 1 cut(s) | 606 |
| Lsp1109I | GCAGC | 4 cut(s) | 13, 49, 99, 687 |
| LweI | GCATC | 3 cut(s) | 294, 526, 687 |
| MaeI | CTAG | 3 cut(s) | 104, 732, 875 |
| MaeII | ACGT | 2 cut(s) | 251, 600 |
| MaeIII | GTNAC | 2 cut(s) | 49, 685 |
| MalI | GATC | 6 cut(s) | 102, 204, 261, 491, 615, 848 |
| MboI | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| MboII | GAAGA | 9 cut(s) | 110, 221, 269, 307, 572, 623, 649, 719, 833 |
| MfeI | CAATTG | 1 cut(s) | 798 |
| MflI | RGATCY | 5 cut(s) | 100, 202, 259, 489, 613 |
| MluCI | AATT | 6 cut(s) | 71, 189, 246, 548, 798, 892 |
| MlyI | GAGTC | 1 cut(s) | 814 |
| MmeI | TCCRAC | 2 cut(s) | 219, 289 |
| MnlI | CCTC | 8 cut(s) | 25, 137, 167, 172, 321, 479, 819, 857 |
| MroXI | GAANNNNTTC | 1 cut(s) | 726 |
| MseI | TTAA | 5 cut(s) | 93, 482, 650, 657, 743 |
| MslI | CAYNNNNRTG | 1 cut(s) | 429 |
| MspA1I | CMGCKG | 2 cut(s) | 112, 292 |
| MspCI | CTTAAG | 1 cut(s) | 481 |
| MspR9I | CCNGG | 2 cut(s) | 351, 366 |
| MunI | CAATTG | 1 cut(s) | 798 |
| Mva1269I | GAATGC | 1 cut(s) | 366 |
| MvaI | CCWGG | 2 cut(s) | 351, 366 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 224 |
| NdeII | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| NlaIII | CATG | 3 cut(s) | 407, 434, 721 |
| NmeAIII | GCCGAG | 1 cut(s) | 55 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 2 cut(s) | 555, 816 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 606 |
| PctI | GAATGC | 1 cut(s) | 366 |
| PdmI | GAANNNNTTC | 1 cut(s) | 726 |
| PfeI | GAWTC | 3 cut(s) | 133, 407, 497 |
| PkrI | GCNGC | 5 cut(s) | 28, 64, 114, 520, 677 |
| PleI | GAGTC | 1 cut(s) | 813 |
| PpsI | GAGTC | 1 cut(s) | 813 |
| Ppu21I | YACGTR | 1 cut(s) | 252 |
| Psp6I | CCWGG | 2 cut(s) | 349, 364 |
| PspGI | CCWGG | 2 cut(s) | 349, 364 |
| PsuI | RGATCY | 5 cut(s) | 100, 202, 259, 489, 613 |
| PvuII | CAGCTG | 2 cut(s) | 112, 292 |
| RsaI | GTAC | 1 cut(s) | 329 |
| RsaNI | GTAC | 1 cut(s) | 328 |
| RseI | CAYNNNNRTG | 1 cut(s) | 429 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| SapI | GCTCTTC | 2 cut(s) | 555, 816 |
| SaqAI | TTAA | 5 cut(s) | 93, 482, 650, 657, 743 |
| SatI | GCNGC | 5 cut(s) | 27, 63, 113, 519, 676 |
| Sau3AI | GATC | 6 cut(s) | 100, 202, 259, 489, 613, 846 |
| ScaI | AGTACT | 1 cut(s) | 329 |
| SchI | GAGTC | 1 cut(s) | 814 |
| ScrFI | CCNGG | 2 cut(s) | 351, 366 |
| SfaNI | GCATC | 3 cut(s) | 294, 526, 687 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 429 |
| SmlI | CTYRAG | 5 cut(s) | 66, 128, 314, 481, 666 |
| SmoI | CTYRAG | 5 cut(s) | 66, 128, 314, 481, 666 |
| SnaBI | TACGTA | 1 cut(s) | 252 |
| SpeI | ACTAGT | 1 cut(s) | 874 |
| Sse9I | AATT | 6 cut(s) | 71, 189, 246, 548, 798, 892 |
| SsiI | CCGC | 1 cut(s) | 519 |
| SspMI | CTAG | 3 cut(s) | 104, 732, 875 |
| StyD4I | CCNGG | 2 cut(s) | 349, 364 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TaaI | ACNGT | 2 cut(s) | 345, 655 |
| TaiI | ACGT | 2 cut(s) | 254, 603 |
| TaqI | TCGA | 3 cut(s) | 87, 156, 172 |
| TasI | AATT | 6 cut(s) | 71, 189, 246, 548, 798, 892 |
| TatI | WGTACW | 1 cut(s) | 327 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 3 cut(s) | 133, 407, 497 |
| Tru1I | TTAA | 5 cut(s) | 93, 482, 650, 657, 743 |
| Tru9I | TTAA | 5 cut(s) | 93, 482, 650, 657, 743 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| TseI | GCWGC | 4 cut(s) | 26, 62, 112, 675 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 6 cut(s) | 258, 270, 420, 447, 717, 777 |
| Vha464I | CTTAAG | 1 cut(s) | 481 |
| XapI | RAATTY | 3 cut(s) | 71, 189, 548 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| XmnI | GAANNNNTTC | 1 cut(s) | 726 |
| XspI | CTAG | 3 cut(s) | 104, 732, 875 |
| ZrmI | AGTACT | 1 cut(s) | 329 |