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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 97, 340 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 97, 286, 287, 340, 429 |
| AgsI | TTSAA | 3 cut(s) | 151, 164, 398 |
| AluBI | AGCT | 3 cut(s) | 324, 443, 510 |
| AluI | AGCT | 3 cut(s) | 324, 443, 510 |
| Ama87I | CYCGRG | 1 cut(s) | 519 |
| ApeKI | GCWGC | 2 cut(s) | 86, 321 |
| AseI | ATTAAT | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 4 cut(s) | 139, 203, 266, 526 |
| AvaI | CYCGRG | 1 cut(s) | 519 |
| BbvI | GCAGC | 2 cut(s) | 98, 333 |
| BccI | CCATC | 3 cut(s) | 99, 118, 188 |
| BisI | GCNGC | 2 cut(s) | 87, 322 |
| BlsI | GCNGC | 2 cut(s) | 88, 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 519 |
| BmsI | GCATC | 2 cut(s) | 120, 378 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 427, 459 |
| BpmI | CTGGAG | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 1 cut(s) | 429 |
| BsaJI | CCNNGG | 1 cut(s) | 17 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 97, 286, 287, 340, 429 |
| Bse1I | ACTGG | 1 cut(s) | 35 |
| Bse3DI | GCAATG | 2 cut(s) | 233, 313 |
| BseDI | CCNNGG | 1 cut(s) | 17 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 97, 286, 287, 340, 429 |
| BseMI | GCAATG | 2 cut(s) | 233, 313 |
| BseNI | ACTGG | 1 cut(s) | 35 |
| BseXI | GCAGC | 2 cut(s) | 98, 333 |
| BsiHKCI | CYCGRG | 1 cut(s) | 519 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 97, 286, 287, 340, 429 |
| BsmI | GAATGC | 1 cut(s) | 17 |
| BsoBI | CYCGRG | 1 cut(s) | 519 |
| Bsp143I | GATC | 1 cut(s) | 115 |
| BsrDI | GCAATG | 2 cut(s) | 233, 313 |
| BsrI | ACTGG | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 17 |
| BssMI | GATC | 1 cut(s) | 115 |
| BssT1I | CCWWGG | 1 cut(s) | 17 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 2 cut(s) | 134, 422 |
| BstDEI | CTNAG | 1 cut(s) | 317 |
| BstEII | GGTNACC | 1 cut(s) | 100 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 1 cut(s) | 118 |
| BstMBI | GATC | 1 cut(s) | 115 |
| BstPI | GGTNACC | 1 cut(s) | 100 |
| BstV1I | GCAGC | 2 cut(s) | 98, 333 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 302 |
| BtgZI | GCGATG | 1 cut(s) | 401 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CviAII | CATG | 1 cut(s) | 263 |
| CviJI | RGCY | 6 cut(s) | 89, 324, 344, 443, 455, 510 |
| CviKI_1 | RGCY | 6 cut(s) | 89, 324, 344, 443, 455, 510 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 1 cut(s) | 317 |
| DpnI | GATC | 1 cut(s) | 117 |
| DpnII | GATC | 1 cut(s) | 115 |
| Eam1104I | CTCTTC | 2 cut(s) | 134, 422 |
| EarI | CTCTTC | 2 cut(s) | 134, 422 |
| Eco130I | CCWWGG | 1 cut(s) | 17 |
| Eco88I | CYCGRG | 1 cut(s) | 519 |
| Eco91I | GGTNACC | 1 cut(s) | 100 |
| EcoO65I | GGTNACC | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 17 |
| ErhI | CCWWGG | 1 cut(s) | 17 |
| FaeI | CATG | 1 cut(s) | 266 |
| FaiI | YATR | 9 cut(s) | 264, 300, 329, 369, 414, 480, 487, 489, 529 |
| FatI | CATG | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 322 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 322 |
| GluI | GCNGC | 2 cut(s) | 87, 322 |
| GsuI | CTGGAG | 1 cut(s) | 317 |
| Hin1II | CATG | 1 cut(s) | 266 |
| HinfI | GANTC | 1 cut(s) | 517 |
| HphI | GGTGA | 4 cut(s) | 139, 203, 266, 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 257 |
| Hpy188III | TCNNGA | 2 cut(s) | 60, 334 |
| Hpy8I | GTNNAC | 1 cut(s) | 257 |
| HpyAV | CCTTC | 2 cut(s) | 260, 487 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 3 cut(s) | 218, 311, 362 |
| HpyF3I | CTNAG | 1 cut(s) | 317 |
| Hsp92II | CATG | 1 cut(s) | 266 |
| Kzo9I | GATC | 1 cut(s) | 115 |
| LmnI | GCTCC | 2 cut(s) | 197, 336 |
| LpnPI | CCDG | 4 cut(s) | 16, 237, 347, 478 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 333 |
| LweI | GCATC | 2 cut(s) | 120, 378 |
| MaeIII | GTNAC | 3 cut(s) | 100, 269, 514 |
| MalI | GATC | 1 cut(s) | 117 |
| MboI | GATC | 1 cut(s) | 115 |
| MboII | GAAGA | 3 cut(s) | 151, 410, 439 |
| MluCI | AATT | 1 cut(s) | 107 |
| MlyI | GAGTC | 1 cut(s) | 511 |
| MnlI | CCTC | 4 cut(s) | 61, 76, 135, 423 |
| MseI | TTAA | 2 cut(s) | 110, 506 |
| Mva1269I | GAATGC | 1 cut(s) | 17 |
| NdeII | GATC | 1 cut(s) | 115 |
| NlaIII | CATG | 1 cut(s) | 266 |
| NmuCI | GTSAC | 1 cut(s) | 514 |
| PaeR7I | CTCGAG | 1 cut(s) | 519 |
| PctI | GAATGC | 1 cut(s) | 17 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 97, 340 |
| PkrI | GCNGC | 2 cut(s) | 88, 323 |
| PleI | GAGTC | 1 cut(s) | 511 |
| PpsI | GAGTC | 1 cut(s) | 511 |
| PshBI | ATTAAT | 1 cut(s) | 110 |
| PspEI | GGTNACC | 1 cut(s) | 100 |
| PspXI | VCTCGAGB | 1 cut(s) | 519 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SaqAI | TTAA | 2 cut(s) | 110, 506 |
| SatI | GCNGC | 2 cut(s) | 87, 322 |
| Sau3AI | GATC | 1 cut(s) | 115 |
| SchI | GAGTC | 1 cut(s) | 511 |
| SetI | ASST | 8 cut(s) | 23, 256, 271, 326, 368, 445, 498, 512 |
| SfaNI | GCATC | 2 cut(s) | 120, 378 |
| Sfr274I | CTCGAG | 1 cut(s) | 519 |
| SlaI | CTCGAG | 1 cut(s) | 519 |
| SmlI | CTYRAG | 2 cut(s) | 444, 519 |
| SmoI | CTYRAG | 2 cut(s) | 444, 519 |
| Sse9I | AATT | 1 cut(s) | 107 |
| StyI | CCWWGG | 1 cut(s) | 17 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TaqI | TCGA | 2 cut(s) | 59, 520 |
| TasI | AATT | 1 cut(s) | 107 |
| Tru1I | TTAA | 2 cut(s) | 110, 506 |
| Tru9I | TTAA | 2 cut(s) | 110, 506 |
| TseFI | GTSAC | 1 cut(s) | 514 |
| TseI | GCWGC | 2 cut(s) | 86, 321 |
| Tsp45I | GTSAC | 1 cut(s) | 514 |
| TspDTI | ATGAA | 3 cut(s) | 24, 261, 279 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 97, 340 |
| VspI | ATTAAT | 1 cut(s) | 110 |
| XhoI | CTCGAG | 1 cut(s) | 519 |