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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1021 |
| AccB1I | GGYRCC | 3 cut(s) | 193, 601, 1373 |
| AciI | CCGC | 1 cut(s) | 242 |
| AclWI | GGATC | 2 cut(s) | 129, 326 |
| AcsI | RAATTY | 1 cut(s) | 57 |
| AcuI | CTGAAG | 9 cut(s) | 266, 327, 705, 803, 813, 825, 975, 1005, 1038 |
| AfaI | GTAC | 2 cut(s) | 23, 577 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 497, 770, 901, 1337, 1455 |
| AflIII | ACRYGT | 1 cut(s) | 748 |
| Alw21I | GWGCWC | 1 cut(s) | 1345 |
| Alw26I | GTCTC | 2 cut(s) | 316, 1264 |
| AlwI | GGATC | 2 cut(s) | 129, 326 |
| ApoI | RAATTY | 1 cut(s) | 57 |
| AseI | ATTAAT | 1 cut(s) | 261 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1035, 1068 |
| AspA2I | CCTAGG | 2 cut(s) | 167, 737 |
| AspLEI | GCGC | 1 cut(s) | 1528 |
| AspS9I | GGNCC | 2 cut(s) | 797, 892 |
| AsuHPI | GGTGA | 4 cut(s) | 241, 488, 562, 926 |
| AvaII | GGWCC | 1 cut(s) | 892 |
| AvrII | CCTAGG | 2 cut(s) | 167, 737 |
| BaeGI | GKGCMC | 1 cut(s) | 606 |
| BanI | GGYRCC | 3 cut(s) | 193, 601, 1373 |
| BanII | GRGCYC | 1 cut(s) | 737 |
| BbsI | GAAGAC | 3 cut(s) | 254, 259, 1430 |
| Bbv12I | GWGCWC | 1 cut(s) | 1345 |
| BccI | CCATC | 7 cut(s) | 2, 41, 487, 500, 536, 623, 1484 |
| BceAI | ACGGC | 1 cut(s) | 748 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 596, 630 |
| BciVI | GTATCC | 1 cut(s) | 122 |
| BcoDI | GTCTC | 2 cut(s) | 316, 1264 |
| BfmI | CTRYAG | 2 cut(s) | 882, 966 |
| BfuAI | ACCTGC | 1 cut(s) | 1021 |
| BfuI | GTATCC | 1 cut(s) | 122 |
| BglII | AGATCT | 1 cut(s) | 814 |
| BlnI | CCTAGG | 2 cut(s) | 167, 737 |
| BmcAI | AGTACT | 1 cut(s) | 577 |
| Bme18I | GGWCC | 1 cut(s) | 892 |
| BmgT120I | GGNCC | 2 cut(s) | 797, 892 |
| BmiI | GGNNCC | 4 cut(s) | 195, 603, 734, 1375 |
| BmsI | GCATC | 6 cut(s) | 205, 385, 860, 1184, 1223, 1262 |
| BpiI | GAAGAC | 3 cut(s) | 254, 259, 1430 |
| BpmI | CTGGAG | 1 cut(s) | 1263 |
| BpuEI | CTTGAG | 1 cut(s) | 831 |
| BsaI | GGTCTC | 1 cut(s) | 316 |
| BsaJI | CCNNGG | 5 cut(s) | 167, 737, 764, 1055, 1428 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1120, 1150, 1274, 1304 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 497, 770, 901, 1337, 1455 |
| Bse1I | ACTGG | 5 cut(s) | 280, 1001, 1034, 1067, 1208 |
| Bse3DI | GCAATG | 1 cut(s) | 1375 |
| BseDI | CCNNGG | 5 cut(s) | 167, 737, 764, 1055, 1428 |
| BseGI | GGATG | 8 cut(s) | 52, 319, 366, 547, 1175, 1214, 1253, 1476 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 497, 770, 901, 1337, 1455 |
| BseMI | GCAATG | 1 cut(s) | 1375 |
| BseMII | CTCAG | 2 cut(s) | 540, 861 |
| BseNI | ACTGG | 5 cut(s) | 280, 1001, 1034, 1067, 1208 |
| BseRI | GAGGAG | 3 cut(s) | 304, 690, 1260 |
| BseSI | GKGCMC | 1 cut(s) | 606 |
| BshNI | GGYRCC | 3 cut(s) | 193, 601, 1373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1345 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 497, 770, 901, 1337, 1455 |
| BsmAI | GTCTC | 2 cut(s) | 316, 1264 |
| Bso31I | GGTCTC | 1 cut(s) | 316 |
| Bsp1286I | GDGCHC | 3 cut(s) | 606, 737, 1345 |
| Bsp143I | GATC | 4 cut(s) | 121, 331, 814, 898 |
| Bsp19I | CCATGG | 1 cut(s) | 1428 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspCNI | CTCAG | 2 cut(s) | 539, 862 |
| BspLI | GGNNCC | 4 cut(s) | 195, 603, 734, 1375 |
| BspMAI | CTGCAG | 1 cut(s) | 970 |
| BspMI | ACCTGC | 1 cut(s) | 1021 |
| BspPI | GGATC | 2 cut(s) | 129, 326 |
| BspT107I | GGYRCC | 3 cut(s) | 193, 601, 1373 |
| BspTNI | GGTCTC | 1 cut(s) | 316 |
| BsrDI | GCAATG | 1 cut(s) | 1375 |
| BsrI | ACTGG | 5 cut(s) | 280, 1001, 1034, 1067, 1208 |
| BssECI | CCNNGG | 5 cut(s) | 167, 737, 764, 1055, 1428 |
| BssMI | GATC | 4 cut(s) | 121, 331, 814, 898 |
| BssT1I | CCWWGG | 4 cut(s) | 167, 737, 1055, 1428 |
| Bst4CI | ACNGT | 1 cut(s) | 71 |
| Bst6I | CTCTTC | 3 cut(s) | 303, 752, 1087 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 965 |
| BstC8I | GCNNGC | 4 cut(s) | 488, 564, 801, 966 |
| BstDEI | CTNAG | 2 cut(s) | 526, 870 |
| BstDSI | CCRYGG | 2 cut(s) | 764, 1428 |
| BstF5I | GGATG | 8 cut(s) | 52, 319, 366, 547, 1175, 1214, 1253, 1476 |
| BstHHI | GCGC | 1 cut(s) | 1528 |
| BstKTI | GATC | 4 cut(s) | 124, 334, 817, 901 |
| BstMAI | GTCTC | 2 cut(s) | 316, 1264 |
| BstMBI | GATC | 4 cut(s) | 121, 331, 814, 898 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 241, 377, 424, 848, 956, 965, 1169, 1247, 1319 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstSFI | CTRYAG | 2 cut(s) | 882, 966 |
| BstSLI | GKGCMC | 1 cut(s) | 606 |
| BstV2I | GAAGAC | 3 cut(s) | 254, 259, 1430 |
| BstX2I | RGATCY | 2 cut(s) | 121, 814 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 435 |
| BstYI | RGATCY | 2 cut(s) | 121, 814 |
| BsuI | GTATCC | 1 cut(s) | 122 |
| BtgI | CCRYGG | 2 cut(s) | 764, 1428 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 8 cut(s) | 52, 319, 366, 547, 1175, 1214, 1253, 1476 |
| BveI | ACCTGC | 1 cut(s) | 1021 |
| Cac8I | GCNNGC | 4 cut(s) | 488, 564, 801, 966 |
| CfoI | GCGC | 1 cut(s) | 1528 |
| Cfr13I | GGNCC | 2 cut(s) | 797, 892 |
| Csp6I | GTAC | 2 cut(s) | 22, 576 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 31, 66 |
| CviAII | CATG | 6 cut(s) | 93, 117, 640, 749, 1429, 1481 |
| CviQI | GTAC | 2 cut(s) | 22, 576 |
| DdeI | CTNAG | 2 cut(s) | 526, 870 |
| DpnI | GATC | 4 cut(s) | 123, 333, 816, 900 |
| DpnII | GATC | 4 cut(s) | 121, 331, 814, 898 |
| Eam1104I | CTCTTC | 3 cut(s) | 303, 752, 1087 |
| EarI | CTCTTC | 3 cut(s) | 303, 752, 1087 |
| Eco130I | CCWWGG | 4 cut(s) | 167, 737, 1055, 1428 |
| Eco147I | AGGCCT | 3 cut(s) | 964, 994, 1060 |
| Eco24I | GRGCYC | 1 cut(s) | 737 |
| Eco31I | GGTCTC | 1 cut(s) | 316 |
| Eco47I | GGWCC | 1 cut(s) | 892 |
| Eco57I | CTGAAG | 9 cut(s) | 266, 327, 705, 803, 813, 825, 975, 1005, 1038 |
| EcoT14I | CCWWGG | 4 cut(s) | 167, 737, 1055, 1428 |
| EcoT38I | GRGCYC | 1 cut(s) | 737 |
| ErhI | CCWWGG | 4 cut(s) | 167, 737, 1055, 1428 |
| FaeI | CATG | 6 cut(s) | 96, 120, 643, 752, 1432, 1484 |
| FatI | CATG | 6 cut(s) | 92, 116, 639, 748, 1428, 1480 |
| FokI | GGATG | 8 cut(s) | 59, 326, 373, 554, 1162, 1201, 1240, 1463 |
| FriOI | GRGCYC | 1 cut(s) | 737 |
| GlaI | GCGC | 1 cut(s) | 1527 |
| GsuI | CTGGAG | 1 cut(s) | 1263 |
| HhaI | GCGC | 1 cut(s) | 1528 |
| Hin1II | CATG | 6 cut(s) | 96, 120, 643, 752, 1432, 1484 |
| Hin6I | GCGC | 1 cut(s) | 1526 |
| HinP1I | GCGC | 1 cut(s) | 1526 |
| HindIII | AAGCTT | 1 cut(s) | 233 |
| HinfI | GANTC | 6 cut(s) | 317, 346, 524, 596, 827, 1547 |
| HphI | GGTGA | 4 cut(s) | 241, 488, 562, 926 |
| Hpy166II | GTNNAC | 1 cut(s) | 1469 |
| Hpy188I | TCNGA | 5 cut(s) | 529, 685, 793, 1219, 1552 |
| Hpy188III | TCNNGA | 4 cut(s) | 74, 321, 335, 1040 |
| Hpy8I | GTNNAC | 1 cut(s) | 1469 |
| HpyCH4III | ACNGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 8 cut(s) | 92, 218, 968, 1175, 1214, 1253, 1514, 1559 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 241, 377, 424, 848, 956, 965, 1169, 1247, 1319 |
| HpyF3I | CTNAG | 2 cut(s) | 526, 870 |
| Hsp92II | CATG | 6 cut(s) | 96, 120, 643, 752, 1432, 1484 |
| HspAI | GCGC | 1 cut(s) | 1526 |
| Kzo9I | GATC | 4 cut(s) | 121, 331, 814, 898 |
| LmnI | GCTCC | 6 cut(s) | 556, 732, 1116, 1247, 1333, 1340 |
| LweI | GCATC | 6 cut(s) | 205, 385, 860, 1184, 1223, 1262 |
| MaeIII | GTNAC | 3 cut(s) | 593, 635, 659 |
| MalI | GATC | 4 cut(s) | 123, 333, 816, 900 |
| MboI | GATC | 4 cut(s) | 121, 331, 814, 898 |
| MfeI | CAATTG | 1 cut(s) | 918 |
| MflI | RGATCY | 2 cut(s) | 121, 814 |
| MhlI | GDGCHC | 3 cut(s) | 606, 737, 1345 |
| MluCI | AATT | 5 cut(s) | 57, 517, 655, 857, 918 |
| MlyI | GAGTC | 3 cut(s) | 518, 590, 836 |
| MmeI | TCCRAC | 1 cut(s) | 1514 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1035, 1068 |
| MseI | TTAA | 4 cut(s) | 261, 354, 465, 582 |
| MspA1I | CMGCKG | 5 cut(s) | 244, 803, 953, 983, 1172 |
| MunI | CAATTG | 1 cut(s) | 918 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 241, 377, 424, 848, 956, 965, 1169, 1247, 1319 |
| NcoI | CCATGG | 1 cut(s) | 1428 |
| NdeII | GATC | 4 cut(s) | 121, 331, 814, 898 |
| NlaIII | CATG | 6 cut(s) | 96, 120, 643, 752, 1432, 1484 |
| NlaIV | GGNNCC | 4 cut(s) | 195, 603, 734, 1375 |
| NmuCI | GTSAC | 2 cut(s) | 593, 635 |
| NspI | RCATGY | 1 cut(s) | 752 |
| PceI | AGGCCT | 3 cut(s) | 964, 994, 1060 |
| PciI | ACATGT | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1035, 1068 |
| PfeI | GAWTC | 3 cut(s) | 317, 346, 1547 |
| PleI | GAGTC | 3 cut(s) | 518, 590, 835 |
| PpsI | GAGTC | 3 cut(s) | 518, 590, 835 |
| PscI | ACATGT | 1 cut(s) | 748 |
| PshBI | ATTAAT | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 4 cut(s) | 195, 603, 734, 1375 |
| PspPI | GGNCC | 2 cut(s) | 797, 892 |
| PstI | CTGCAG | 1 cut(s) | 970 |
| PsuI | RGATCY | 2 cut(s) | 121, 814 |
| PvuII | CAGCTG | 4 cut(s) | 803, 953, 983, 1172 |
| RsaI | GTAC | 2 cut(s) | 23, 577 |
| RsaNI | GTAC | 2 cut(s) | 22, 576 |
| SaqAI | TTAA | 4 cut(s) | 261, 354, 465, 582 |
| Sau3AI | GATC | 4 cut(s) | 121, 331, 814, 898 |
| Sau96I | GGNCC | 2 cut(s) | 797, 892 |
| ScaI | AGTACT | 1 cut(s) | 577 |
| SchI | GAGTC | 3 cut(s) | 518, 590, 836 |
| SduI | GDGCHC | 3 cut(s) | 606, 737, 1345 |
| SfaNI | GCATC | 6 cut(s) | 205, 385, 860, 1184, 1223, 1262 |
| SfcI | CTRYAG | 2 cut(s) | 882, 966 |
| SinI | GGWCC | 1 cut(s) | 892 |
| SmlI | CTYRAG | 1 cut(s) | 846 |
| SmoI | CTYRAG | 1 cut(s) | 846 |
| Sse9I | AATT | 5 cut(s) | 57, 517, 655, 857, 918 |
| SseBI | AGGCCT | 3 cut(s) | 964, 994, 1060 |
| SsiI | CCGC | 1 cut(s) | 242 |
| StuI | AGGCCT | 3 cut(s) | 964, 994, 1060 |
| StyI | CCWWGG | 4 cut(s) | 167, 737, 1055, 1428 |
| TaaI | ACNGT | 1 cut(s) | 71 |
| TaqI | TCGA | 1 cut(s) | 320 |
| TasI | AATT | 5 cut(s) | 57, 517, 655, 857, 918 |
| TatI | WGTACW | 2 cut(s) | 21, 575 |
| TfiI | GAWTC | 3 cut(s) | 317, 346, 1547 |
| Tru1I | TTAA | 4 cut(s) | 261, 354, 465, 582 |
| Tru9I | TTAA | 4 cut(s) | 261, 354, 465, 582 |
| TseFI | GTSAC | 2 cut(s) | 593, 635 |
| Tsp45I | GTSAC | 2 cut(s) | 593, 635 |
| TspDTI | ATGAA | 4 cut(s) | 259, 715, 1436, 1497 |
| VpaK11BI | GGWCC | 1 cut(s) | 892 |
| VspI | ATTAAT | 1 cut(s) | 261 |
| XapI | RAATTY | 1 cut(s) | 57 |
| XbaI | TCTAGA | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XmaJI | CCTAGG | 2 cut(s) | 167, 737 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1035, 1068 |
| ZrmI | AGTACT | 1 cut(s) | 577 |