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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AclWI | GGATC | 4 cut(s) | 225, 455, 468, 676 |
| AcuI | CTGAAG | 1 cut(s) | 315 |
| AfaI | GTAC | 3 cut(s) | 21, 57, 594 |
| AflII | CTTAAG | 1 cut(s) | 539 |
| AgsI | TTSAA | 5 cut(s) | 82, 350, 559, 580, 730 |
| AjnI | CCWGG | 1 cut(s) | 140 |
| AleI | CACNNNNGTG | 1 cut(s) | 740 |
| AluBI | AGCT | 8 cut(s) | 41, 87, 186, 287, 386, 576, 619, 644 |
| AluI | AGCT | 8 cut(s) | 41, 87, 186, 287, 386, 576, 619, 644 |
| Alw21I | GWGCWC | 1 cut(s) | 621 |
| AlwI | GGATC | 4 cut(s) | 225, 455, 468, 676 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| ApeKI | GCWGC | 2 cut(s) | 644, 707 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 497, 529, 704, 736 |
| AseI | ATTAAT | 1 cut(s) | 107 |
| AspS9I | GGNCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| AvaII | GGWCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| BamHI | GGATCC | 1 cut(s) | 460 |
| BanII | GRGCYC | 1 cut(s) | 621 |
| Bbv12I | GWGCWC | 1 cut(s) | 621 |
| BbvI | GCAGC | 2 cut(s) | 631, 719 |
| BccI | CCATC | 2 cut(s) | 22, 62 |
| BciT130I | CCWGG | 1 cut(s) | 142 |
| BfaI | CTAG | 2 cut(s) | 516, 663 |
| BfrI | CTTAAG | 1 cut(s) | 539 |
| BisI | GCNGC | 2 cut(s) | 645, 708 |
| BlsI | GCNGC | 2 cut(s) | 646, 709 |
| BmcAI | AGTACT | 2 cut(s) | 21, 57 |
| Bme1390I | CCNGG | 1 cut(s) | 142 |
| Bme18I | GGWCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| BmgT120I | GGNCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| BmiI | GGNNCC | 1 cut(s) | 462 |
| BmrFI | CCNGG | 1 cut(s) | 142 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 717 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| BsaWI | WCCGGW | 1 cut(s) | 199 |
| Bse1I | ACTGG | 2 cut(s) | 462, 515 |
| Bse3DI | GCAATG | 1 cut(s) | 374 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseBI | CCWGG | 1 cut(s) | 142 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 4 cut(s) | 50, 238, 487, 549 |
| BseMI | GCAATG | 1 cut(s) | 374 |
| BseNI | ACTGG | 2 cut(s) | 462, 515 |
| BseXI | GCAGC | 2 cut(s) | 631, 719 |
| BseYI | CCCAGC | 2 cut(s) | 186, 242 |
| BsiHKAI | GWGCWC | 1 cut(s) | 621 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BsmI | GAATGC | 1 cut(s) | 657 |
| Bsp1286I | GDGCHC | 1 cut(s) | 621 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp143I | GATC | 4 cut(s) | 217, 460, 602, 668 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspLI | GGNNCC | 1 cut(s) | 462 |
| BspPI | GGATC | 4 cut(s) | 225, 455, 468, 676 |
| BspQI | GCTCTTC | 1 cut(s) | 77 |
| BspTI | CTTAAG | 1 cut(s) | 539 |
| BsrDI | GCAATG | 1 cut(s) | 374 |
| BsrI | ACTGG | 2 cut(s) | 462, 515 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 4 cut(s) | 217, 460, 602, 668 |
| Bst2UI | CCWGG | 1 cut(s) | 142 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstAFI | CTTAAG | 1 cut(s) | 539 |
| BstBAI | YACGTR | 1 cut(s) | 717 |
| BstC8I | GCNNGC | 1 cut(s) | 747 |
| BstDEI | CTNAG | 1 cut(s) | 622 |
| BstF5I | GGATG | 4 cut(s) | 50, 238, 487, 549 |
| BstKTI | GATC | 4 cut(s) | 220, 463, 605, 671 |
| BstMBI | GATC | 4 cut(s) | 217, 460, 602, 668 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 616 |
| BstNI | CCWGG | 1 cut(s) | 142 |
| BstNSI | RCATGY | 2 cut(s) | 402, 749 |
| BstSCI | CCNGG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 2 cut(s) | 631, 719 |
| BstX2I | RGATCY | 1 cut(s) | 460 |
| BstYI | RGATCY | 1 cut(s) | 460 |
| BtsCI | GGATG | 4 cut(s) | 50, 238, 487, 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 508 |
| Cac8I | GCNNGC | 1 cut(s) | 747 |
| Cfr13I | GGNCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| Csp6I | GTAC | 3 cut(s) | 20, 56, 593 |
| CviAII | CATG | 2 cut(s) | 399, 746 |
| CviQI | GTAC | 3 cut(s) | 20, 56, 593 |
| DdeI | CTNAG | 1 cut(s) | 622 |
| DpnI | GATC | 4 cut(s) | 219, 462, 604, 670 |
| DpnII | GATC | 4 cut(s) | 217, 460, 602, 668 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| Ecl136II | GAGCTC | 1 cut(s) | 619 |
| Eco24I | GRGCYC | 1 cut(s) | 621 |
| Eco47I | GGWCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| Eco53kI | GAGCTC | 1 cut(s) | 619 |
| Eco57I | CTGAAG | 1 cut(s) | 315 |
| EcoICRI | GAGCTC | 1 cut(s) | 619 |
| EcoRII | CCWGG | 1 cut(s) | 140 |
| EcoT38I | GRGCYC | 1 cut(s) | 621 |
| FaeI | CATG | 2 cut(s) | 402, 749 |
| FatI | CATG | 2 cut(s) | 398, 745 |
| FauNDI | CATATG | 1 cut(s) | 472 |
| Fnu4HI | GCNGC | 2 cut(s) | 645, 708 |
| FokI | GGATG | 4 cut(s) | 57, 245, 474, 536 |
| FriOI | GRGCYC | 1 cut(s) | 621 |
| Fsp4HI | GCNGC | 2 cut(s) | 645, 708 |
| FspBI | CTAG | 2 cut(s) | 516, 663 |
| GluI | GCNGC | 2 cut(s) | 645, 708 |
| GsaI | CCCAGC | 2 cut(s) | 190, 246 |
| HapII | CCGG | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 402, 749 |
| HincII | GTYRAC | 3 cut(s) | 101, 411, 723 |
| HindII | GTYRAC | 3 cut(s) | 101, 411, 723 |
| HpaII | CCGG | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 6 cut(s) | 101, 249, 340, 411, 677, 723 |
| Hpy188I | TCNGA | 3 cut(s) | 222, 262, 364 |
| Hpy188III | TCNNGA | 3 cut(s) | 200, 445, 491 |
| Hpy8I | GTNNAC | 6 cut(s) | 101, 249, 340, 411, 677, 723 |
| HpyAV | CCTTC | 3 cut(s) | 208, 262, 736 |
| HpyCH4IV | ACGT | 1 cut(s) | 716 |
| HpyCH4V | TGCA | 7 cut(s) | 309, 404, 570, 647, 657, 745, 749 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 616 |
| HpyF3I | CTNAG | 1 cut(s) | 622 |
| HpySE526I | ACGT | 1 cut(s) | 716 |
| Hsp92II | CATG | 2 cut(s) | 402, 749 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| Kzo9I | GATC | 4 cut(s) | 217, 460, 602, 668 |
| LguI | GCTCTTC | 1 cut(s) | 77 |
| Lsp1109I | GCAGC | 2 cut(s) | 631, 719 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 2 cut(s) | 516, 663 |
| MaeII | ACGT | 1 cut(s) | 716 |
| MaeIII | GTNAC | 2 cut(s) | 279, 545 |
| MalI | GATC | 4 cut(s) | 219, 462, 604, 670 |
| MboI | GATC | 4 cut(s) | 217, 460, 602, 668 |
| MboII | GAAGA | 2 cut(s) | 94, 640 |
| MfeI | CAATTG | 1 cut(s) | 612 |
| MflI | RGATCY | 1 cut(s) | 460 |
| MhlI | GDGCHC | 1 cut(s) | 621 |
| MluCI | AATT | 5 cut(s) | 108, 390, 612, 684, 760 |
| MnlI | CCTC | 2 cut(s) | 229, 682 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MseI | TTAA | 5 cut(s) | 107, 375, 389, 540, 763 |
| MslI | CAYNNNNRTG | 1 cut(s) | 740 |
| MspA1I | CMGCKG | 1 cut(s) | 186 |
| MspCI | CTTAAG | 1 cut(s) | 539 |
| MspI | CCGG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 142 |
| MunI | CAATTG | 1 cut(s) | 612 |
| Mva1269I | GAATGC | 1 cut(s) | 657 |
| MvaI | CCWGG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 616 |
| NdeI | CATATG | 1 cut(s) | 472 |
| NdeII | GATC | 4 cut(s) | 217, 460, 602, 668 |
| NlaIII | CATG | 2 cut(s) | 402, 749 |
| NlaIV | GGNNCC | 1 cut(s) | 462 |
| NmuCI | GTSAC | 1 cut(s) | 545 |
| NspI | RCATGY | 2 cut(s) | 402, 749 |
| OliI | CACNNNNGTG | 1 cut(s) | 740 |
| PaeI | GCATGC | 1 cut(s) | 749 |
| PciSI | GCTCTTC | 1 cut(s) | 77 |
| PctI | GAATGC | 1 cut(s) | 657 |
| PkrI | GCNGC | 2 cut(s) | 646, 709 |
| Ppu21I | YACGTR | 1 cut(s) | 717 |
| PshBI | ATTAAT | 1 cut(s) | 107 |
| Psp124BI | GAGCTC | 1 cut(s) | 621 |
| Psp6I | CCWGG | 1 cut(s) | 140 |
| PspFI | CCCAGC | 2 cut(s) | 186, 242 |
| PspGI | CCWGG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 1 cut(s) | 462 |
| PspPI | GGNCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| PsuI | RGATCY | 1 cut(s) | 460 |
| PvuII | CAGCTG | 1 cut(s) | 186 |
| RsaI | GTAC | 3 cut(s) | 21, 57, 594 |
| RsaNI | GTAC | 3 cut(s) | 20, 56, 593 |
| RseI | CAYNNNNRTG | 1 cut(s) | 740 |
| SacI | GAGCTC | 1 cut(s) | 621 |
| SapI | GCTCTTC | 1 cut(s) | 77 |
| SaqAI | TTAA | 5 cut(s) | 107, 375, 389, 540, 763 |
| SatI | GCNGC | 2 cut(s) | 645, 708 |
| Sau3AI | GATC | 4 cut(s) | 217, 460, 602, 668 |
| Sau96I | GGNCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| ScaI | AGTACT | 2 cut(s) | 21, 57 |
| ScrFI | CCNGG | 1 cut(s) | 142 |
| SduI | GDGCHC | 1 cut(s) | 621 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SinI | GGWCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 740 |
| SmlI | CTYRAG | 1 cut(s) | 539 |
| SmoI | CTYRAG | 1 cut(s) | 539 |
| SphI | GCATGC | 1 cut(s) | 749 |
| Sse9I | AATT | 5 cut(s) | 108, 390, 612, 684, 760 |
| SspMI | CTAG | 2 cut(s) | 516, 663 |
| SstI | GAGCTC | 1 cut(s) | 621 |
| StyD4I | CCNGG | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 719 |
| TaqI | TCGA | 2 cut(s) | 329, 503 |
| TasI | AATT | 5 cut(s) | 108, 390, 612, 684, 760 |
| TatI | WGTACW | 2 cut(s) | 19, 55 |
| Tru1I | TTAA | 5 cut(s) | 107, 375, 389, 540, 763 |
| Tru9I | TTAA | 5 cut(s) | 107, 375, 389, 540, 763 |
| TscAI | CASTG | 1 cut(s) | 515 |
| TseFI | GTSAC | 1 cut(s) | 545 |
| TseI | GCWGC | 2 cut(s) | 644, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 545 |
| TspDTI | ATGAA | 2 cut(s) | 244, 464 |
| TspRI | CASTG | 1 cut(s) | 515 |
| Vha464I | CTTAAG | 1 cut(s) | 539 |
| VpaK11BI | GGWCC | 5 cut(s) | 202, 249, 380, 442, 677 |
| VspI | ATTAAT | 1 cut(s) | 107 |
| XceI | RCATGY | 2 cut(s) | 402, 749 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 390 |
| XspI | CTAG | 2 cut(s) | 516, 663 |
| ZrmI | AGTACT | 2 cut(s) | 21, 57 |