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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 35, 437 |
| AclWI | GGATC | 1 cut(s) | 275 |
| AfaI | GTAC | 1 cut(s) | 335 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 35, 437, 496 |
| AgsI | TTSAA | 2 cut(s) | 269, 380 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AluBI | AGCT | 3 cut(s) | 347, 360, 575 |
| AluI | AGCT | 3 cut(s) | 347, 360, 575 |
| Alw21I | GWGCWC | 3 cut(s) | 90, 117, 362 |
| Alw26I | GTCTC | 4 cut(s) | 121, 195, 232, 358 |
| AlwI | GGATC | 1 cut(s) | 275 |
| Ama87I | CYCGRG | 1 cut(s) | 361 |
| AoxI | GGCC | 5 cut(s) | 26, 80, 107, 134, 260 |
| ApeKI | GCWGC | 2 cut(s) | 538, 586 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 552 |
| AspS9I | GGNCC | 5 cut(s) | 26, 80, 107, 134, 524 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AvaI | CYCGRG | 1 cut(s) | 361 |
| AvaII | GGWCC | 1 cut(s) | 524 |
| AxyI | CCTNAGG | 2 cut(s) | 138, 456 |
| BaeGI | GKGCMC | 1 cut(s) | 196 |
| BanII | GRGCYC | 1 cut(s) | 362 |
| Bbv12I | GWGCWC | 3 cut(s) | 90, 117, 362 |
| BbvI | GCAGC | 2 cut(s) | 550, 598 |
| BccI | CCATC | 4 cut(s) | 17, 64, 91, 386 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BcoDI | GTCTC | 4 cut(s) | 121, 195, 232, 358 |
| BfaI | CTAG | 1 cut(s) | 342 |
| BisI | GCNGC | 2 cut(s) | 539, 587 |
| BlpI | GCTNAGC | 1 cut(s) | 306 |
| BlsI | GCNGC | 2 cut(s) | 540, 588 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| Bme18I | GGWCC | 1 cut(s) | 524 |
| BmeT110I | CYCGRG | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 5 cut(s) | 26, 80, 107, 134, 524 |
| BmiI | GGNNCC | 3 cut(s) | 171, 525, 549 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BpmI | CTGGAG | 1 cut(s) | 369 |
| Bpu10I | CCTNAGC | 2 cut(s) | 84, 111 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 1 cut(s) | 400 |
| BsaBI | GATNNNNATC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 401 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 35, 437, 496 |
| Bse1I | ACTGG | 1 cut(s) | 263 |
| Bse21I | CCTNAGG | 2 cut(s) | 138, 456 |
| Bse8I | GATNNNNATC | 1 cut(s) | 410 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseDI | CCNNGG | 2 cut(s) | 321, 401 |
| BseGI | GGATG | 3 cut(s) | 16, 214, 411 |
| BseJI | GATNNNNATC | 1 cut(s) | 410 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 35, 437, 496 |
| BseMII | CTCAG | 7 cut(s) | 75, 102, 129, 156, 211, 305, 590 |
| BseNI | ACTGG | 1 cut(s) | 263 |
| BseRI | GAGGAG | 1 cut(s) | 366 |
| BseSI | GKGCMC | 1 cut(s) | 196 |
| BseXI | GCAGC | 2 cut(s) | 550, 598 |
| BsgI | GTGCAG | 2 cut(s) | 557, 605 |
| BshFI | GGCC | 5 cut(s) | 28, 82, 109, 136, 262 |
| BsiHKAI | GWGCWC | 3 cut(s) | 90, 117, 362 |
| BsiHKCI | CYCGRG | 1 cut(s) | 361 |
| BsiSI | CCGG | 1 cut(s) | 490 |
| BslFI | GGGAC | 3 cut(s) | 60, 87, 175 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 35, 437, 496 |
| BsmAI | GTCTC | 4 cut(s) | 121, 195, 232, 358 |
| BsmFI | GGGAC | 3 cut(s) | 60, 87, 175 |
| BsnI | GGCC | 5 cut(s) | 28, 82, 109, 136, 262 |
| BsoBI | CYCGRG | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 4 cut(s) | 90, 117, 196, 362 |
| Bsp143I | GATC | 1 cut(s) | 280 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 306 |
| Bsp19I | CCATGG | 1 cut(s) | 321 |
| BspANI | GGCC | 5 cut(s) | 28, 82, 109, 136, 262 |
| BspCNI | CTCAG | 7 cut(s) | 76, 103, 130, 157, 210, 304, 589 |
| BspLI | GGNNCC | 3 cut(s) | 171, 525, 549 |
| BspPI | GGATC | 1 cut(s) | 275 |
| BsrI | ACTGG | 1 cut(s) | 263 |
| BssECI | CCNNGG | 2 cut(s) | 321, 401 |
| BssMI | GATC | 1 cut(s) | 280 |
| BssT1I | CCWWGG | 2 cut(s) | 321, 401 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 4 cut(s) | 92, 119, 583, 593 |
| BstDEI | CTNAG | 9 cut(s) | 84, 111, 138, 165, 197, 291, 306, 456, 576 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 3 cut(s) | 16, 214, 411 |
| BstKTI | GATC | 1 cut(s) | 283 |
| BstMAI | GTCTC | 4 cut(s) | 121, 195, 232, 358 |
| BstMBI | GATC | 1 cut(s) | 280 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 316, 607 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstSLI | GKGCMC | 1 cut(s) | 196 |
| BstV1I | GCAGC | 2 cut(s) | 550, 598 |
| Bsu36I | CCTNAGG | 2 cut(s) | 138, 456 |
| BsuRI | GGCC | 5 cut(s) | 28, 82, 109, 136, 262 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BtsCI | GGATG | 3 cut(s) | 16, 214, 411 |
| BtsIMutI | CAGTG | 3 cut(s) | 97, 124, 598 |
| Cfr13I | GGNCC | 5 cut(s) | 26, 80, 107, 134, 524 |
| Csp6I | GTAC | 1 cut(s) | 334 |
| CviAII | CATG | 7 cut(s) | 50, 77, 104, 131, 275, 322, 542 |
| CviQI | GTAC | 1 cut(s) | 334 |
| DdeI | CTNAG | 9 cut(s) | 84, 111, 138, 165, 197, 291, 306, 456, 576 |
| DpnI | GATC | 1 cut(s) | 282 |
| DpnII | GATC | 1 cut(s) | 280 |
| Ecl136II | GAGCTC | 1 cut(s) | 360 |
| Eco130I | CCWWGG | 2 cut(s) | 321, 401 |
| Eco24I | GRGCYC | 1 cut(s) | 362 |
| Eco47I | GGWCC | 1 cut(s) | 524 |
| Eco53kI | GAGCTC | 1 cut(s) | 360 |
| Eco81I | CCTNAGG | 2 cut(s) | 138, 456 |
| Eco88I | CYCGRG | 1 cut(s) | 361 |
| EcoICRI | GAGCTC | 1 cut(s) | 360 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 2 cut(s) | 321, 401 |
| EcoT38I | GRGCYC | 1 cut(s) | 362 |
| ErhI | CCWWGG | 2 cut(s) | 321, 401 |
| FaeI | CATG | 7 cut(s) | 53, 80, 107, 134, 278, 325, 545 |
| FaqI | GGGAC | 3 cut(s) | 60, 87, 175 |
| FatI | CATG | 7 cut(s) | 49, 76, 103, 130, 274, 321, 541 |
| FauNDI | CATATG | 2 cut(s) | 150, 558 |
| Fnu4HI | GCNGC | 2 cut(s) | 539, 587 |
| FokI | GGATG | 3 cut(s) | 23, 221, 418 |
| FriOI | GRGCYC | 1 cut(s) | 362 |
| Fsp4HI | GCNGC | 2 cut(s) | 539, 587 |
| FspBI | CTAG | 1 cut(s) | 342 |
| GluI | GCNGC | 2 cut(s) | 539, 587 |
| GsuI | CTGGAG | 1 cut(s) | 369 |
| HaeIII | GGCC | 5 cut(s) | 28, 82, 109, 136, 262 |
| HapII | CCGG | 1 cut(s) | 490 |
| Hin1II | CATG | 7 cut(s) | 53, 80, 107, 134, 278, 325, 545 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HinfI | GANTC | 1 cut(s) | 386 |
| HpaII | CCGG | 1 cut(s) | 490 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 247, 398 |
| Hpy188I | TCNGA | 4 cut(s) | 200, 294, 391, 579 |
| Hpy188III | TCNNGA | 2 cut(s) | 363, 527 |
| Hpy8I | GTNNAC | 2 cut(s) | 247, 398 |
| HpyAV | CCTTC | 5 cut(s) | 152, 206, 295, 324, 470 |
| HpyCH4III | ACNGT | 4 cut(s) | 92, 119, 583, 593 |
| HpyCH4V | TGCA | 6 cut(s) | 224, 443, 514, 538, 562, 586 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 316, 607 |
| HpyF3I | CTNAG | 9 cut(s) | 84, 111, 138, 165, 197, 291, 306, 456, 576 |
| Hsp92II | CATG | 7 cut(s) | 53, 80, 107, 134, 278, 325, 545 |
| Kzo9I | GATC | 1 cut(s) | 280 |
| Lsp1109I | GCAGC | 2 cut(s) | 550, 598 |
| MaeI | CTAG | 1 cut(s) | 342 |
| MaeIII | GTNAC | 1 cut(s) | 450 |
| MalI | GATC | 1 cut(s) | 282 |
| MboI | GATC | 1 cut(s) | 280 |
| MboII | GAAGA | 2 cut(s) | 194, 281 |
| MhlI | GDGCHC | 4 cut(s) | 90, 117, 196, 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 552 |
| MseI | TTAA | 1 cut(s) | 507 |
| MspI | CCGG | 1 cut(s) | 490 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 316, 607 |
| NcoI | CCATGG | 1 cut(s) | 321 |
| NdeI | CATATG | 2 cut(s) | 150, 558 |
| NdeII | GATC | 1 cut(s) | 280 |
| NlaIII | CATG | 7 cut(s) | 53, 80, 107, 134, 278, 325, 545 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 525, 549 |
| PaeR7I | CTCGAG | 1 cut(s) | 361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 1 cut(s) | 386 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 35, 437 |
| PkrI | GCNGC | 2 cut(s) | 540, 588 |
| Psp124BI | GAGCTC | 1 cut(s) | 362 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 525, 549 |
| PspPI | GGNCC | 5 cut(s) | 26, 80, 107, 134, 524 |
| RsaI | GTAC | 1 cut(s) | 335 |
| RsaNI | GTAC | 1 cut(s) | 334 |
| SacI | GAGCTC | 1 cut(s) | 362 |
| SaqAI | TTAA | 1 cut(s) | 507 |
| SatI | GCNGC | 2 cut(s) | 539, 587 |
| Sau3AI | GATC | 1 cut(s) | 280 |
| Sau96I | GGNCC | 5 cut(s) | 26, 80, 107, 134, 524 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SduI | GDGCHC | 4 cut(s) | 90, 117, 196, 362 |
| Sfr274I | CTCGAG | 1 cut(s) | 361 |
| SinI | GGWCC | 1 cut(s) | 524 |
| SlaI | CTCGAG | 1 cut(s) | 361 |
| SmlI | CTYRAG | 2 cut(s) | 361, 415 |
| SmoI | CTYRAG | 2 cut(s) | 361, 415 |
| SspMI | CTAG | 1 cut(s) | 342 |
| SstI | GAGCTC | 1 cut(s) | 362 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| StyI | CCWWGG | 2 cut(s) | 321, 401 |
| TaaI | ACNGT | 4 cut(s) | 92, 119, 583, 593 |
| TaqI | TCGA | 1 cut(s) | 362 |
| TfiI | GAWTC | 1 cut(s) | 386 |
| Tru1I | TTAA | 1 cut(s) | 507 |
| Tru9I | TTAA | 1 cut(s) | 507 |
| TscAI | CASTG | 3 cut(s) | 97, 124, 598 |
| TseI | GCWGC | 2 cut(s) | 538, 586 |
| TspDTI | ATGAA | 2 cut(s) | 225, 545 |
| TspRI | CASTG | 3 cut(s) | 97, 124, 598 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 35, 437 |
| VpaK11BI | GGWCC | 1 cut(s) | 524 |
| XhoI | CTCGAG | 1 cut(s) | 361 |
| XmnI | GAANNNNTTC | 1 cut(s) | 552 |
| XspI | CTAG | 1 cut(s) | 342 |