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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 1294 |
| AclWI | GGATC | 2 cut(s) | 738, 815 |
| AcsI | RAATTY | 3 cut(s) | 16, 1055, 1254 |
| AcuI | CTGAAG | 2 cut(s) | 486, 948 |
| AfaI | GTAC | 4 cut(s) | 330, 714, 982, 1346 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 479, 557 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 462, 494 |
| AluBI | AGCT | 5 cut(s) | 214, 289, 373, 926, 1136 |
| AluI | AGCT | 5 cut(s) | 214, 289, 373, 926, 1136 |
| Alw26I | GTCTC | 2 cut(s) | 27, 1184 |
| AlwI | GGATC | 2 cut(s) | 738, 815 |
| Aor13HI | TCCGGA | 1 cut(s) | 1294 |
| ApeKI | GCWGC | 2 cut(s) | 289, 373 |
| ApoI | RAATTY | 3 cut(s) | 16, 1055, 1254 |
| AspS9I | GGNCC | 1 cut(s) | 560 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 217, 287, 899 |
| AvaII | GGWCC | 1 cut(s) | 560 |
| AxyI | CCTNAGG | 1 cut(s) | 552 |
| BbvI | GCAGC | 2 cut(s) | 276, 360 |
| BccI | CCATC | 3 cut(s) | 47, 266, 1022 |
| BciVI | GTATCC | 1 cut(s) | 1261 |
| BcoDI | GTCTC | 2 cut(s) | 27, 1184 |
| BfaI | CTAG | 7 cut(s) | 447, 474, 654, 707, 1182, 1311, 1390 |
| BfuI | GTATCC | 1 cut(s) | 1261 |
| BisI | GCNGC | 2 cut(s) | 290, 374 |
| BlpI | GCTNAGC | 1 cut(s) | 591 |
| BlsI | GCNGC | 2 cut(s) | 291, 375 |
| BmcAI | AGTACT | 1 cut(s) | 982 |
| Bme18I | GGWCC | 1 cut(s) | 560 |
| BmgT120I | GGNCC | 1 cut(s) | 560 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmsI | GCATC | 2 cut(s) | 400, 859 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 1 cut(s) | 516 |
| BsaWI | WCCGGW | 1 cut(s) | 1294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 479, 557 |
| Bse1I | ACTGG | 2 cut(s) | 364, 850 |
| Bse21I | CCTNAGG | 1 cut(s) | 552 |
| Bse3DI | GCAATG | 1 cut(s) | 1120 |
| BseAI | TCCGGA | 1 cut(s) | 1294 |
| BseGI | GGATG | 5 cut(s) | 310, 674, 703, 799, 808 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 479, 557 |
| BseMI | GCAATG | 1 cut(s) | 1120 |
| BseMII | CTCAG | 4 cut(s) | 206, 248, 566, 582 |
| BseNI | ACTGG | 2 cut(s) | 364, 850 |
| BseRI | GAGGAG | 4 cut(s) | 803, 812, 980, 1013 |
| BseXI | GCAGC | 2 cut(s) | 276, 360 |
| BsgI | GTGCAG | 1 cut(s) | 359 |
| BsiSI | CCGG | 1 cut(s) | 1295 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 479, 557 |
| BsmAI | GTCTC | 2 cut(s) | 27, 1184 |
| BsmBI | CGTCTC | 1 cut(s) | 27 |
| BsmI | GAATGC | 1 cut(s) | 913 |
| Bsp13I | TCCGGA | 1 cut(s) | 1294 |
| Bsp1407I | TGTACA | 1 cut(s) | 712 |
| Bsp143I | GATC | 3 cut(s) | 700, 730, 820 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 591 |
| BspCNI | CTCAG | 4 cut(s) | 207, 247, 565, 583 |
| BspEI | TCCGGA | 1 cut(s) | 1294 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspPI | GGATC | 2 cut(s) | 738, 815 |
| BsrDI | GCAATG | 1 cut(s) | 1120 |
| BsrGI | TGTACA | 1 cut(s) | 712 |
| BsrI | ACTGG | 2 cut(s) | 364, 850 |
| BssMI | GATC | 3 cut(s) | 700, 730, 820 |
| Bst4CI | ACNGT | 3 cut(s) | 91, 164, 985 |
| Bst6I | CTCTTC | 1 cut(s) | 942 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 523 |
| BstAUI | TGTACA | 1 cut(s) | 712 |
| BstC8I | GCNNGC | 3 cut(s) | 538, 684, 1149 |
| BstDEI | CTNAG | 5 cut(s) | 215, 234, 552, 591, 1127 |
| BstF5I | GGATG | 5 cut(s) | 310, 674, 703, 799, 808 |
| BstKTI | GATC | 3 cut(s) | 703, 733, 823 |
| BstMAI | GTCTC | 2 cut(s) | 27, 1184 |
| BstMBI | GATC | 3 cut(s) | 700, 730, 820 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 523, 1335 |
| BstNSI | RCATGY | 2 cut(s) | 899, 1151 |
| BstV1I | GCAGC | 2 cut(s) | 276, 360 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 21 |
| Bsu36I | CCTNAGG | 1 cut(s) | 552 |
| BsuI | GTATCC | 1 cut(s) | 1261 |
| BtsCI | GGATG | 5 cut(s) | 310, 674, 703, 799, 808 |
| BtsIMutI | CAGTG | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 3 cut(s) | 538, 684, 1149 |
| Cfr13I | GGNCC | 1 cut(s) | 560 |
| Csp6I | GTAC | 4 cut(s) | 329, 713, 981, 1345 |
| CviJI | RGCY | 8 cut(s) | 214, 289, 373, 438, 550, 639, 926, 1136 |
| CviKI_1 | RGCY | 8 cut(s) | 214, 289, 373, 438, 550, 639, 926, 1136 |
| CviQI | GTAC | 4 cut(s) | 329, 713, 981, 1345 |
| DdeI | CTNAG | 5 cut(s) | 215, 234, 552, 591, 1127 |
| DpnI | GATC | 3 cut(s) | 702, 732, 822 |
| DpnII | GATC | 3 cut(s) | 700, 730, 820 |
| Eam1104I | CTCTTC | 1 cut(s) | 942 |
| EarI | CTCTTC | 1 cut(s) | 942 |
| Eco47I | GGWCC | 1 cut(s) | 560 |
| Eco57I | CTGAAG | 2 cut(s) | 486, 948 |
| Eco81I | CCTNAGG | 1 cut(s) | 552 |
| EcoRI | GAATTC | 1 cut(s) | 1055 |
| EcoT22I | ATGCAT | 1 cut(s) | 874 |
| Esp3I | CGTCTC | 1 cut(s) | 27 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1331, 1363 |
| FauNDI | CATATG | 4 cut(s) | 130, 315, 745, 1304 |
| Fnu4HI | GCNGC | 2 cut(s) | 290, 374 |
| FokI | GGATG | 5 cut(s) | 317, 681, 710, 806, 815 |
| Fsp4HI | GCNGC | 2 cut(s) | 290, 374 |
| FspBI | CTAG | 7 cut(s) | 447, 474, 654, 707, 1182, 1311, 1390 |
| GluI | GCNGC | 2 cut(s) | 290, 374 |
| HapII | CCGG | 1 cut(s) | 1295 |
| HindIII | AAGCTT | 1 cut(s) | 1134 |
| HinfI | GANTC | 2 cut(s) | 217, 1081 |
| HpaII | CCGG | 1 cut(s) | 1295 |
| HphI | GGTGA | 4 cut(s) | 16, 217, 287, 899 |
| Hpy166II | GTNNAC | 1 cut(s) | 625 |
| Hpy188I | TCNGA | 1 cut(s) | 1027 |
| Hpy188III | TCNNGA | 4 cut(s) | 464, 707, 1259, 1295 |
| Hpy8I | GTNNAC | 1 cut(s) | 625 |
| HpyAV | CCTTC | 7 cut(s) | 35, 424, 686, 878, 923, 1030, 1091 |
| HpyCH4III | ACNGT | 3 cut(s) | 91, 164, 985 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 523, 1335 |
| HpyF3I | CTNAG | 5 cut(s) | 215, 234, 552, 591, 1127 |
| Kpn2I | TCCGGA | 1 cut(s) | 1294 |
| Kzo9I | GATC | 3 cut(s) | 700, 730, 820 |
| LmnI | GCTCC | 2 cut(s) | 370, 1144 |
| Lsp1109I | GCAGC | 2 cut(s) | 276, 360 |
| LweI | GCATC | 2 cut(s) | 400, 859 |
| MaeI | CTAG | 7 cut(s) | 447, 474, 654, 707, 1182, 1311, 1390 |
| MaeIII | GTNAC | 2 cut(s) | 164, 359 |
| MalI | GATC | 3 cut(s) | 702, 732, 822 |
| MboI | GATC | 3 cut(s) | 700, 730, 820 |
| MfeI | CAATTG | 1 cut(s) | 1324 |
| MlyI | GAGTC | 1 cut(s) | 226 |
| MmeI | TCCRAC | 3 cut(s) | 348, 1109, 1122 |
| Mph1103I | ATGCAT | 1 cut(s) | 874 |
| MroI | TCCGGA | 1 cut(s) | 1294 |
| MseI | TTAA | 5 cut(s) | 347, 630, 1281, 1349, 1362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1164 |
| MspA1I | CMGCKG | 1 cut(s) | 214 |
| MspI | CCGG | 1 cut(s) | 1295 |
| MunI | CAATTG | 1 cut(s) | 1324 |
| Mva1269I | GAATGC | 1 cut(s) | 913 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 523, 1335 |
| NdeI | CATATG | 4 cut(s) | 130, 315, 745, 1304 |
| NdeII | GATC | 3 cut(s) | 700, 730, 820 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| NmuCI | GTSAC | 2 cut(s) | 164, 359 |
| NsiI | ATGCAT | 1 cut(s) | 874 |
| NspI | RCATGY | 2 cut(s) | 899, 1151 |
| PaeI | GCATGC | 1 cut(s) | 1151 |
| PctI | GAATGC | 1 cut(s) | 913 |
| PfeI | GAWTC | 1 cut(s) | 1081 |
| PkrI | GCNGC | 2 cut(s) | 291, 375 |
| PleI | GAGTC | 1 cut(s) | 225 |
| PpsI | GAGTC | 1 cut(s) | 225 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| PspPI | GGNCC | 1 cut(s) | 560 |
| PvuII | CAGCTG | 1 cut(s) | 214 |
| RsaI | GTAC | 4 cut(s) | 330, 714, 982, 1346 |
| RsaNI | GTAC | 4 cut(s) | 329, 713, 981, 1345 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1164 |
| SaqAI | TTAA | 5 cut(s) | 347, 630, 1281, 1349, 1362 |
| SatI | GCNGC | 2 cut(s) | 290, 374 |
| Sau3AI | GATC | 3 cut(s) | 700, 730, 820 |
| Sau96I | GGNCC | 1 cut(s) | 560 |
| ScaI | AGTACT | 1 cut(s) | 982 |
| SchI | GAGTC | 1 cut(s) | 226 |
| SfaNI | GCATC | 2 cut(s) | 400, 859 |
| SinI | GGWCC | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1164 |
| SmlI | CTYRAG | 1 cut(s) | 531 |
| SmoI | CTYRAG | 1 cut(s) | 531 |
| SphI | GCATGC | 1 cut(s) | 1151 |
| SspI | AATATT | 1 cut(s) | 1172 |
| SspMI | CTAG | 7 cut(s) | 447, 474, 654, 707, 1182, 1311, 1390 |
| TaaI | ACNGT | 3 cut(s) | 91, 164, 985 |
| TatI | WGTACW | 2 cut(s) | 712, 980 |
| TfiI | GAWTC | 1 cut(s) | 1081 |
| Tru1I | TTAA | 5 cut(s) | 347, 630, 1281, 1349, 1362 |
| Tru9I | TTAA | 5 cut(s) | 347, 630, 1281, 1349, 1362 |
| TscAI | CASTG | 1 cut(s) | 167 |
| TseFI | GTSAC | 2 cut(s) | 164, 359 |
| TseI | GCWGC | 2 cut(s) | 289, 373 |
| Tsp45I | GTSAC | 2 cut(s) | 164, 359 |
| TspDTI | ATGAA | 9 cut(s) | 23, 117, 243, 705, 789, 960, 1081, 1091, 1182 |
| TspRI | CASTG | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 1 cut(s) | 560 |
| XapI | RAATTY | 3 cut(s) | 16, 1055, 1254 |
| XbaI | TCTAGA | 1 cut(s) | 706 |
| XceI | RCATGY | 2 cut(s) | 899, 1151 |
| XspI | CTAG | 7 cut(s) | 447, 474, 654, 707, 1182, 1311, 1390 |
| ZrmI | AGTACT | 1 cut(s) | 982 |
| Zsp2I | ATGCAT | 1 cut(s) | 874 |