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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 173 |
| AccIII | TCCGGA | 1 cut(s) | 244 |
| AciI | CCGC | 2 cut(s) | 539, 600 |
| AclWI | GGATC | 1 cut(s) | 236 |
| AcsI | RAATTY | 1 cut(s) | 739 |
| AcuI | CTGAAG | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 45, 284 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 112, 181, 320, 431, 750 |
| AflII | CTTAAG | 1 cut(s) | 187 |
| AgsI | TTSAA | 2 cut(s) | 128, 520 |
| AjnI | CCWGG | 1 cut(s) | 430 |
| AluBI | AGCT | 4 cut(s) | 536, 569, 590, 626 |
| AluI | AGCT | 4 cut(s) | 536, 569, 590, 626 |
| Alw26I | GTCTC | 2 cut(s) | 113, 220 |
| AlwI | GGATC | 1 cut(s) | 236 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 218 |
| Aor13HI | TCCGGA | 1 cut(s) | 244 |
| AoxI | GGCC | 2 cut(s) | 392, 665 |
| ApoI | RAATTY | 1 cut(s) | 739 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 599, 631 |
| AspS9I | GGNCC | 1 cut(s) | 162 |
| AsuC2I | CCSGG | 1 cut(s) | 387 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BauI | CACGAG | 1 cut(s) | 661 |
| BbvCI | CCTCAGC | 1 cut(s) | 652 |
| BccI | CCATC | 2 cut(s) | 483, 502 |
| BceAI | ACGGC | 1 cut(s) | 171 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 70, 104 |
| BciT130I | CCWGG | 1 cut(s) | 432 |
| BclI | TGATCA | 1 cut(s) | 306 |
| BcnI | CCSGG | 1 cut(s) | 387 |
| BcoDI | GTCTC | 2 cut(s) | 113, 220 |
| BfaI | CTAG | 5 cut(s) | 36, 47, 339, 378, 528 |
| BfrI | CTTAAG | 1 cut(s) | 187 |
| BfuAI | ACCTGC | 1 cut(s) | 173 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 391 |
| BmcAI | AGTACT | 1 cut(s) | 45 |
| Bme1390I | CCNGG | 2 cut(s) | 387, 432 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmgT120I | GGNCC | 1 cut(s) | 162 |
| BmrFI | CCNGG | 2 cut(s) | 387, 432 |
| BmsI | GCATC | 1 cut(s) | 58 |
| Bpu10I | CCTNAGC | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 1 cut(s) | 484 |
| BpuMI | CCSGG | 1 cut(s) | 387 |
| BsaWI | WCCGGW | 1 cut(s) | 244 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 652, 682 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 112, 181, 320, 431, 750 |
| Bse118I | RCCGGY | 1 cut(s) | 313 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| BseAI | TCCGGA | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 432 |
| BseGI | GGATG | 1 cut(s) | 73 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 112, 181, 320, 431, 750 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 666 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 1 cut(s) | 151 |
| BshFI | GGCC | 2 cut(s) | 394, 667 |
| BsiSI | CCGG | 3 cut(s) | 245, 314, 387 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 112, 181, 320, 431, 750 |
| BsmAI | GTCTC | 2 cut(s) | 113, 220 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsnI | GGCC | 2 cut(s) | 394, 667 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| Bsp13I | TCCGGA | 1 cut(s) | 244 |
| Bsp143I | GATC | 3 cut(s) | 241, 306, 716 |
| BspACI | CCGC | 2 cut(s) | 539, 600 |
| BspANI | GGCC | 2 cut(s) | 394, 667 |
| BspCNI | CTCAG | 1 cut(s) | 665 |
| BspEI | TCCGGA | 1 cut(s) | 244 |
| BspMI | ACCTGC | 1 cut(s) | 173 |
| BspPI | GGATC | 1 cut(s) | 236 |
| BspTI | CTTAAG | 1 cut(s) | 187 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| BsrFI | RCCGGY | 1 cut(s) | 313 |
| BssAI | RCCGGY | 1 cut(s) | 313 |
| BssMI | GATC | 3 cut(s) | 241, 306, 716 |
| BssSI | CACGAG | 1 cut(s) | 661 |
| Bst2BI | CACGAG | 1 cut(s) | 661 |
| Bst2UI | CCWGG | 1 cut(s) | 432 |
| Bst4CI | ACNGT | 1 cut(s) | 372 |
| BstAFI | CTTAAG | 1 cut(s) | 187 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 206, 210 |
| BstDEI | CTNAG | 1 cut(s) | 652 |
| BstEII | GGTNACC | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 73 |
| BstKTI | GATC | 3 cut(s) | 244, 309, 719 |
| BstMAI | GTCTC | 2 cut(s) | 113, 220 |
| BstMBI | GATC | 3 cut(s) | 241, 306, 716 |
| BstNI | CCWGG | 1 cut(s) | 432 |
| BstNSI | RCATGY | 1 cut(s) | 174 |
| BstPI | GGTNACC | 1 cut(s) | 101 |
| BstSCI | CCNGG | 2 cut(s) | 385, 430 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstX2I | RGATCY | 1 cut(s) | 241 |
| BstYI | RGATCY | 1 cut(s) | 241 |
| BsuRI | GGCC | 2 cut(s) | 394, 667 |
| BtsCI | GGATG | 1 cut(s) | 73 |
| BveI | ACCTGC | 1 cut(s) | 173 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 206, 210 |
| CaiI | CAGNNNCTG | 1 cut(s) | 218 |
| Cfr10I | RCCGGY | 1 cut(s) | 313 |
| Cfr13I | GGNCC | 1 cut(s) | 162 |
| Csp6I | GTAC | 2 cut(s) | 44, 283 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 123, 158 |
| CviAII | CATG | 2 cut(s) | 171, 201 |
| CviQI | GTAC | 2 cut(s) | 44, 283 |
| DdeI | CTNAG | 1 cut(s) | 652 |
| DpnI | GATC | 3 cut(s) | 243, 308, 718 |
| DpnII | GATC | 3 cut(s) | 241, 306, 716 |
| Eco147I | AGGCCT | 1 cut(s) | 667 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| Eco57I | CTGAAG | 1 cut(s) | 57 |
| Eco91I | GGTNACC | 1 cut(s) | 101 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoO65I | GGTNACC | 1 cut(s) | 101 |
| EcoRI | GAATTC | 1 cut(s) | 739 |
| EcoRII | CCWGG | 1 cut(s) | 430 |
| FaeI | CATG | 2 cut(s) | 174, 204 |
| FaiI | YATR | 4 cut(s) | 172, 202, 226, 410 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 446, 478 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 2 cut(s) | 170, 200 |
| FbaI | TGATCA | 1 cut(s) | 306 |
| FokI | GGATG | 1 cut(s) | 80 |
| FspBI | CTAG | 5 cut(s) | 36, 47, 339, 378, 528 |
| HaeIII | GGCC | 2 cut(s) | 394, 667 |
| HapII | CCGG | 3 cut(s) | 245, 314, 387 |
| Hin1II | CATG | 2 cut(s) | 174, 204 |
| HincII | GTYRAC | 2 cut(s) | 148, 319 |
| HindII | GTYRAC | 2 cut(s) | 148, 319 |
| HinfI | GANTC | 2 cut(s) | 524, 578 |
| HpaI | GTTAAC | 1 cut(s) | 319 |
| HpaII | CCGG | 3 cut(s) | 245, 314, 387 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy166II | GTNNAC | 4 cut(s) | 148, 319, 336, 618 |
| Hpy188I | TCNGA | 2 cut(s) | 76, 672 |
| Hpy188III | TCNNGA | 5 cut(s) | 91, 245, 378, 528, 714 |
| Hpy8I | GTNNAC | 4 cut(s) | 148, 319, 336, 618 |
| HpyAV | CCTTC | 5 cut(s) | 58, 122, 384, 514, 720 |
| HpyCH4III | ACNGT | 1 cut(s) | 372 |
| HpyCH4IV | ACGT | 1 cut(s) | 281 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 81, 168, 204, 221, 260, 421, 515 |
| HpyF3I | CTNAG | 1 cut(s) | 652 |
| HpySE526I | ACGT | 1 cut(s) | 281 |
| Hsp92II | CATG | 2 cut(s) | 174, 204 |
| Kpn2I | TCCGGA | 1 cut(s) | 244 |
| Ksp22I | TGATCA | 1 cut(s) | 306 |
| KspAI | GTTAAC | 1 cut(s) | 319 |
| Kzo9I | GATC | 3 cut(s) | 241, 306, 716 |
| LpnPI | CCDG | 9 cut(s) | 178, 220, 258, 327, 400, 417, 444, 564, 727 |
| LweI | GCATC | 1 cut(s) | 58 |
| MaeI | CTAG | 5 cut(s) | 36, 47, 339, 378, 528 |
| MaeII | ACGT | 1 cut(s) | 281 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 3 cut(s) | 243, 308, 718 |
| MboI | GATC | 3 cut(s) | 241, 306, 716 |
| MboII | GAAGA | 4 cut(s) | 359, 447, 514, 517 |
| MflI | RGATCY | 1 cut(s) | 241 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MluCI | AATT | 4 cut(s) | 301, 357, 411, 739 |
| MlyI | GAGTC | 1 cut(s) | 572 |
| MmeI | TCCRAC | 2 cut(s) | 695, 728 |
| MnlI | CCTC | 6 cut(s) | 106, 375, 459, 657, 661, 678 |
| MroI | TCCGGA | 1 cut(s) | 244 |
| MseI | TTAA | 4 cut(s) | 188, 272, 288, 318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 691 |
| MspCI | CTTAAG | 1 cut(s) | 187 |
| MspI | CCGG | 3 cut(s) | 245, 314, 387 |
| MspR9I | CCNGG | 2 cut(s) | 387, 432 |
| MvaI | CCWGG | 1 cut(s) | 432 |
| NciI | CCSGG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 241, 306, 716 |
| NlaIII | CATG | 2 cut(s) | 174, 204 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspI | RCATGY | 1 cut(s) | 174 |
| PceI | AGGCCT | 1 cut(s) | 667 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 668 |
| PfeI | GAWTC | 1 cut(s) | 524 |
| PleI | GAGTC | 1 cut(s) | 572 |
| PpsI | GAGTC | 1 cut(s) | 572 |
| PpuMI | RGGWCCY | 1 cut(s) | 162 |
| Psp5II | RGGWCCY | 1 cut(s) | 162 |
| Psp6I | CCWGG | 1 cut(s) | 430 |
| PspEI | GGTNACC | 1 cut(s) | 101 |
| PspGI | CCWGG | 1 cut(s) | 430 |
| PspPI | GGNCC | 1 cut(s) | 162 |
| PspPPI | RGGWCCY | 1 cut(s) | 162 |
| PstNI | CAGNNNCTG | 1 cut(s) | 218 |
| PsuI | RGATCY | 1 cut(s) | 241 |
| RsaI | GTAC | 2 cut(s) | 45, 284 |
| RsaNI | GTAC | 2 cut(s) | 44, 283 |
| RseI | CAYNNNNRTG | 1 cut(s) | 691 |
| SaqAI | TTAA | 4 cut(s) | 188, 272, 288, 318 |
| Sau3AI | GATC | 3 cut(s) | 241, 306, 716 |
| Sau96I | GGNCC | 1 cut(s) | 162 |
| ScaI | AGTACT | 1 cut(s) | 45 |
| SchI | GAGTC | 1 cut(s) | 572 |
| ScrFI | CCNGG | 2 cut(s) | 387, 432 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SinI | GGWCC | 1 cut(s) | 162 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 691 |
| SmlI | CTYRAG | 2 cut(s) | 187, 463 |
| SmoI | CTYRAG | 2 cut(s) | 187, 463 |
| Sse9I | AATT | 4 cut(s) | 301, 357, 411, 739 |
| SseBI | AGGCCT | 1 cut(s) | 667 |
| SsiI | CCGC | 2 cut(s) | 539, 600 |
| SspMI | CTAG | 5 cut(s) | 36, 47, 339, 378, 528 |
| StuI | AGGCCT | 1 cut(s) | 667 |
| StyD4I | CCNGG | 2 cut(s) | 385, 430 |
| TaaI | ACNGT | 1 cut(s) | 372 |
| TaiI | ACGT | 1 cut(s) | 284 |
| TasI | AATT | 4 cut(s) | 301, 357, 411, 739 |
| TatI | WGTACW | 1 cut(s) | 43 |
| TauI | GCSGC | 2 cut(s) | 542, 602 |
| TfiI | GAWTC | 1 cut(s) | 524 |
| Tru1I | TTAA | 4 cut(s) | 188, 272, 288, 318 |
| Tru9I | TTAA | 4 cut(s) | 188, 272, 288, 318 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| TspGWI | ACGGA | 1 cut(s) | 336 |
| Vha464I | CTTAAG | 1 cut(s) | 187 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| XapI | RAATTY | 1 cut(s) | 739 |
| XbaI | TCTAGA | 2 cut(s) | 377, 527 |
| XceI | RCATGY | 1 cut(s) | 174 |
| XspI | CTAG | 5 cut(s) | 36, 47, 339, 378, 528 |
| ZrmI | AGTACT | 1 cut(s) | 45 |