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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 105 |
| AarI | CACCTGC | 1 cut(s) | 569 |
| AatII | GACGTC | 1 cut(s) | 1465 |
| Acc36I | ACCTGC | 2 cut(s) | 569, 1063 |
| Acc65I | GGTACC | 1 cut(s) | 1069 |
| AccB1I | GGYRCC | 1 cut(s) | 1069 |
| AccI | GTMKAC | 3 cut(s) | 194, 378, 1254 |
| AcoI | YGGCCR | 2 cut(s) | 841, 1177 |
| AcsI | RAATTY | 4 cut(s) | 364, 533, 773, 1062 |
| AcyI | GRCGYC | 1 cut(s) | 1462 |
| AfaI | GTAC | 4 cut(s) | 347, 1017, 1071, 1471 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 578, 961, 1249 |
| AflIII | ACRYGT | 3 cut(s) | 759, 800, 1154 |
| AgsI | TTSAA | 9 cut(s) | 68, 92, 210, 305, 369, 695, 866, 1115, 1362 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 151 |
| AjnI | CCWGG | 3 cut(s) | 421, 682, 1021 |
| AleI | CACNNNNGTG | 1 cut(s) | 1344 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 4 cut(s) | 277, 680, 1040, 1129 |
| AluI | AGCT | 4 cut(s) | 277, 680, 1040, 1129 |
| Alw26I | GTCTC | 1 cut(s) | 1116 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 482 |
| AoxI | GGCC | 6 cut(s) | 557, 629, 665, 841, 1028, 1177 |
| ApeKI | GCWGC | 2 cut(s) | 473, 476 |
| ApoI | RAATTY | 4 cut(s) | 364, 533, 773, 1062 |
| Asp718I | GGTACC | 1 cut(s) | 1069 |
| AspS9I | GGNCC | 6 cut(s) | 557, 629, 665, 964, 1044, 1295 |
| AsuHPI | GGTGA | 4 cut(s) | 593, 938, 1331, 1407 |
| AvaII | GGWCC | 3 cut(s) | 964, 1044, 1295 |
| BalI | TGGCCA | 2 cut(s) | 843, 1179 |
| BanI | GGYRCC | 1 cut(s) | 1069 |
| BbsI | GAAGAC | 1 cut(s) | 1141 |
| BbvI | GCAGC | 2 cut(s) | 460, 488 |
| BccI | CCATC | 4 cut(s) | 254, 380, 959, 1426 |
| BciT130I | CCWGG | 3 cut(s) | 423, 684, 1023 |
| BciVI | GTATCC | 1 cut(s) | 825 |
| BcoDI | GTCTC | 1 cut(s) | 1116 |
| BfaI | CTAG | 1 cut(s) | 1041 |
| BfmI | CTRYAG | 1 cut(s) | 474 |
| BfuAI | ACCTGC | 2 cut(s) | 569, 1063 |
| BfuI | GTATCC | 1 cut(s) | 825 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1027 |
| BglII | AGATCT | 1 cut(s) | 1480 |
| BisI | GCNGC | 2 cut(s) | 474, 477 |
| BlsI | GCNGC | 2 cut(s) | 475, 478 |
| Bme1390I | CCNGG | 3 cut(s) | 423, 684, 1023 |
| Bme18I | GGWCC | 3 cut(s) | 964, 1044, 1295 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 6 cut(s) | 557, 629, 665, 964, 1044, 1295 |
| BmiI | GGNNCC | 1 cut(s) | 1071 |
| BmrFI | CCNGG | 3 cut(s) | 423, 684, 1023 |
| BmsI | GCATC | 8 cut(s) | 280, 305, 418, 424, 517, 701, 994, 1241 |
| BpiI | GAAGAC | 1 cut(s) | 1141 |
| BpmI | CTGGAG | 1 cut(s) | 666 |
| BsaHI | GRCGYC | 1 cut(s) | 1462 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 422, 646 |
| BsaXI | ACNNNNNCTCC | 9 cut(s) | 26, 221, 251, 762, 792, 1153, 1183, 1257, 1287 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 578, 961, 1249 |
| Bse1I | ACTGG | 1 cut(s) | 967 |
| Bse3DI | GCAATG | 1 cut(s) | 155 |
| BseBI | CCWGG | 3 cut(s) | 423, 684, 1023 |
| BseDI | CCNNGG | 3 cut(s) | 76, 422, 646 |
| BseGI | GGATG | 9 cut(s) | 265, 320, 433, 877, 901, 951, 985, 997, 1090 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 578, 961, 1249 |
| BseMI | GCAATG | 1 cut(s) | 155 |
| BseMII | CTCAG | 2 cut(s) | 474, 1224 |
| BseNI | ACTGG | 1 cut(s) | 967 |
| BseXI | GCAGC | 2 cut(s) | 460, 488 |
| BshFI | GGCC | 6 cut(s) | 559, 631, 667, 843, 1030, 1179 |
| BshNI | GGYRCC | 1 cut(s) | 1069 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 578, 961, 1249 |
| BsmAI | GTCTC | 1 cut(s) | 1116 |
| BsnI | GGCC | 6 cut(s) | 559, 631, 667, 843, 1030, 1179 |
| Bsp143I | GATC | 3 cut(s) | 719, 1149, 1480 |
| Bsp19I | CCATGG | 2 cut(s) | 76, 646 |
| BspANI | GGCC | 6 cut(s) | 559, 631, 667, 843, 1030, 1179 |
| BspCNI | CTCAG | 2 cut(s) | 475, 1223 |
| BspLI | GGNNCC | 1 cut(s) | 1071 |
| BspMAI | CTGCAG | 1 cut(s) | 478 |
| BspMI | ACCTGC | 2 cut(s) | 569, 1063 |
| BspT107I | GGYRCC | 1 cut(s) | 1069 |
| BsrDI | GCAATG | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 967 |
| BssECI | CCNNGG | 3 cut(s) | 76, 422, 646 |
| BssMI | GATC | 3 cut(s) | 719, 1149, 1480 |
| BssNAI | GTATAC | 1 cut(s) | 195 |
| BssNI | GRCGYC | 1 cut(s) | 1462 |
| BssT1I | CCWWGG | 2 cut(s) | 76, 646 |
| Bst1107I | GTATAC | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 3 cut(s) | 423, 684, 1023 |
| Bst4CI | ACNGT | 6 cut(s) | 199, 637, 1333, 1343, 1381, 1493 |
| BstACI | GRCGYC | 1 cut(s) | 1462 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 854, 1238 |
| BstC8I | GCNNGC | 3 cut(s) | 320, 737, 912 |
| BstDEI | CTNAG | 3 cut(s) | 483, 1130, 1210 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 646 |
| BstF5I | GGATG | 9 cut(s) | 265, 320, 433, 877, 901, 951, 985, 997, 1090 |
| BstKTI | GATC | 3 cut(s) | 722, 1152, 1483 |
| BstMAI | GTCTC | 1 cut(s) | 1116 |
| BstMBI | GATC | 3 cut(s) | 719, 1149, 1480 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 854, 1027, 1238 |
| BstNI | CCWGG | 3 cut(s) | 423, 684, 1023 |
| BstNSI | RCATGY | 5 cut(s) | 322, 618, 763, 804, 1158 |
| BstSCI | CCNGG | 3 cut(s) | 421, 682, 1021 |
| BstSFI | CTRYAG | 1 cut(s) | 474 |
| BstV1I | GCAGC | 2 cut(s) | 460, 488 |
| BstV2I | GAAGAC | 1 cut(s) | 1141 |
| BstX2I | RGATCY | 1 cut(s) | 1480 |
| BstYI | RGATCY | 1 cut(s) | 1480 |
| BstZ17I | GTATAC | 1 cut(s) | 195 |
| BsuI | GTATCC | 1 cut(s) | 825 |
| BsuRI | GGCC | 6 cut(s) | 559, 631, 667, 843, 1030, 1179 |
| BtgI | CCRYGG | 2 cut(s) | 76, 646 |
| BtsCI | GGATG | 9 cut(s) | 265, 320, 433, 877, 901, 951, 985, 997, 1090 |
| BtsIMutI | CAGTG | 2 cut(s) | 421, 974 |
| BveI | ACCTGC | 2 cut(s) | 569, 1063 |
| Cac8I | GCNNGC | 3 cut(s) | 320, 737, 912 |
| CaiI | CAGNNNCTG | 1 cut(s) | 482 |
| Cfr13I | GGNCC | 6 cut(s) | 557, 629, 665, 964, 1044, 1295 |
| CseI | GACGC | 1 cut(s) | 1415 |
| Csp6I | GTAC | 4 cut(s) | 346, 1016, 1070, 1470 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1350, 1385 |
| CviQI | GTAC | 4 cut(s) | 346, 1016, 1070, 1470 |
| DdeI | CTNAG | 3 cut(s) | 483, 1130, 1210 |
| DpnI | GATC | 3 cut(s) | 721, 1151, 1482 |
| DpnII | GATC | 3 cut(s) | 719, 1149, 1480 |
| DriI | GACNNNNNGTC | 1 cut(s) | 151 |
| EaeI | YGGCCR | 2 cut(s) | 841, 1177 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 2 cut(s) | 76, 646 |
| Eco147I | AGGCCT | 1 cut(s) | 1030 |
| Eco47I | GGWCC | 3 cut(s) | 964, 1044, 1295 |
| EcoRII | CCWGG | 3 cut(s) | 421, 682, 1021 |
| EcoT14I | CCWWGG | 2 cut(s) | 76, 646 |
| EcoT22I | ATGCAT | 3 cut(s) | 320, 616, 1234 |
| ErhI | CCWWGG | 2 cut(s) | 76, 646 |
| FauNDI | CATATG | 1 cut(s) | 931 |
| FblI | GTMKAC | 3 cut(s) | 194, 378, 1254 |
| Fnu4HI | GCNGC | 2 cut(s) | 474, 477 |
| FokI | GGATG | 9 cut(s) | 272, 327, 440, 884, 908, 938, 972, 984, 1077 |
| Fsp4HI | GCNGC | 2 cut(s) | 474, 477 |
| FspBI | CTAG | 1 cut(s) | 1041 |
| GluI | GCNGC | 2 cut(s) | 474, 477 |
| GsuI | CTGGAG | 1 cut(s) | 666 |
| HaeIII | GGCC | 6 cut(s) | 559, 631, 667, 843, 1030, 1179 |
| HgaI | GACGC | 1 cut(s) | 1415 |
| Hin1I | GRCGYC | 1 cut(s) | 1462 |
| HincII | GTYRAC | 1 cut(s) | 1255 |
| HindII | GTYRAC | 1 cut(s) | 1255 |
| HindIII | AAGCTT | 1 cut(s) | 1127 |
| HinfI | GANTC | 5 cut(s) | 31, 57, 754, 943, 1373 |
| HphI | GGTGA | 4 cut(s) | 593, 938, 1331, 1407 |
| Hpy166II | GTNNAC | 5 cut(s) | 195, 379, 419, 972, 1255 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 1213 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 5 cut(s) | 195, 379, 419, 972, 1255 |
| Hpy99I | CGWCG | 4 cut(s) | 1333, 1347, 1409, 1464 |
| HpyAV | CCTTC | 4 cut(s) | 452, 500, 1020, 1255 |
| HpyCH4III | ACNGT | 6 cut(s) | 199, 637, 1333, 1343, 1381, 1493 |
| HpyCH4IV | ACGT | 2 cut(s) | 1439, 1462 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 854, 1027, 1238 |
| HpyF3I | CTNAG | 3 cut(s) | 483, 1130, 1210 |
| HpySE526I | ACGT | 2 cut(s) | 1439, 1462 |
| Hsp92I | GRCGYC | 1 cut(s) | 1462 |
| KpnI | GGTACC | 1 cut(s) | 1073 |
| Kzo9I | GATC | 3 cut(s) | 719, 1149, 1480 |
| LmnI | GCTCC | 2 cut(s) | 274, 685 |
| Lsp1109I | GCAGC | 2 cut(s) | 460, 488 |
| LweI | GCATC | 8 cut(s) | 280, 305, 418, 424, 517, 701, 994, 1241 |
| MaeI | CTAG | 1 cut(s) | 1041 |
| MaeII | ACGT | 2 cut(s) | 1439, 1462 |
| MaeIII | GTNAC | 7 cut(s) | 58, 263, 397, 751, 902, 1196, 1425 |
| MalI | GATC | 3 cut(s) | 721, 1151, 1482 |
| MboI | GATC | 3 cut(s) | 719, 1149, 1480 |
| MboII | GAAGA | 3 cut(s) | 184, 1146, 1227 |
| MflI | RGATCY | 1 cut(s) | 1480 |
| MlsI | TGGCCA | 2 cut(s) | 843, 1179 |
| MluCI | AATT | 9 cut(s) | 213, 364, 533, 695, 773, 849, 858, 1062, 1105 |
| MluNI | TGGCCA | 2 cut(s) | 843, 1179 |
| MlyI | GAGTC | 2 cut(s) | 66, 748 |
| MmeI | TCCRAC | 5 cut(s) | 292, 430, 478, 791, 809 |
| Mox20I | TGGCCA | 2 cut(s) | 843, 1179 |
| Mph1103I | ATGCAT | 3 cut(s) | 320, 616, 1234 |
| MscI | TGGCCA | 2 cut(s) | 843, 1179 |
| MseI | TTAA | 3 cut(s) | 167, 959, 1146 |
| MslI | CAYNNNNRTG | 3 cut(s) | 651, 762, 1344 |
| Msp20I | TGGCCA | 2 cut(s) | 843, 1179 |
| MspR9I | CCNGG | 3 cut(s) | 423, 684, 1023 |
| MvaI | CCWGG | 3 cut(s) | 423, 684, 1023 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 854, 1027, 1238 |
| NcoI | CCATGG | 2 cut(s) | 76, 646 |
| NdeI | CATATG | 1 cut(s) | 931 |
| NdeII | GATC | 3 cut(s) | 719, 1149, 1480 |
| NlaIV | GGNNCC | 1 cut(s) | 1071 |
| NmuCI | GTSAC | 4 cut(s) | 58, 397, 751, 1196 |
| NsiI | ATGCAT | 3 cut(s) | 320, 616, 1234 |
| NspI | RCATGY | 5 cut(s) | 322, 618, 763, 804, 1158 |
| OliI | CACNNNNGTG | 1 cut(s) | 1344 |
| PaeI | GCATGC | 1 cut(s) | 322 |
| PaqCI | CACCTGC | 1 cut(s) | 569 |
| PceI | AGGCCT | 1 cut(s) | 1030 |
| PciI | ACATGT | 3 cut(s) | 759, 800, 1154 |
| PfeI | GAWTC | 3 cut(s) | 31, 943, 1373 |
| PflFI | GACNNNGTC | 1 cut(s) | 56 |
| PfoI | TCCNGGA | 1 cut(s) | 682 |
| PkrI | GCNGC | 2 cut(s) | 475, 478 |
| PleI | GAGTC | 2 cut(s) | 65, 748 |
| PpsI | GAGTC | 2 cut(s) | 65, 748 |
| PscI | ACATGT | 3 cut(s) | 759, 800, 1154 |
| PsiI | TTATAA | 1 cut(s) | 105 |
| Psp6I | CCWGG | 3 cut(s) | 421, 682, 1021 |
| PspGI | CCWGG | 3 cut(s) | 421, 682, 1021 |
| PspN4I | GGNNCC | 1 cut(s) | 1071 |
| PspPI | GGNCC | 6 cut(s) | 557, 629, 665, 964, 1044, 1295 |
| PstI | CTGCAG | 1 cut(s) | 478 |
| PstNI | CAGNNNCTG | 1 cut(s) | 482 |
| PsuI | RGATCY | 1 cut(s) | 1480 |
| PsyI | GACNNNGTC | 1 cut(s) | 56 |
| RsaI | GTAC | 4 cut(s) | 347, 1017, 1071, 1471 |
| RsaNI | GTAC | 4 cut(s) | 346, 1016, 1070, 1470 |
| RseI | CAYNNNNRTG | 3 cut(s) | 651, 762, 1344 |
| SalI | GTCGAC | 1 cut(s) | 1253 |
| SaqAI | TTAA | 3 cut(s) | 167, 959, 1146 |
| SatI | GCNGC | 2 cut(s) | 474, 477 |
| Sau3AI | GATC | 3 cut(s) | 719, 1149, 1480 |
| Sau96I | GGNCC | 6 cut(s) | 557, 629, 665, 964, 1044, 1295 |
| SchI | GAGTC | 2 cut(s) | 66, 748 |
| ScrFI | CCNGG | 3 cut(s) | 423, 684, 1023 |
| SfaNI | GCATC | 8 cut(s) | 280, 305, 418, 424, 517, 701, 994, 1241 |
| SfcI | CTRYAG | 1 cut(s) | 474 |
| SinI | GGWCC | 3 cut(s) | 964, 1044, 1295 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 651, 762, 1344 |
| SphI | GCATGC | 1 cut(s) | 322 |
| Sse9I | AATT | 9 cut(s) | 213, 364, 533, 695, 773, 849, 858, 1062, 1105 |
| SseBI | AGGCCT | 1 cut(s) | 1030 |
| SspI | AATATT | 1 cut(s) | 136 |
| SspMI | CTAG | 1 cut(s) | 1041 |
| StuI | AGGCCT | 1 cut(s) | 1030 |
| StyD4I | CCNGG | 3 cut(s) | 421, 682, 1021 |
| StyI | CCWWGG | 2 cut(s) | 76, 646 |
| TaaI | ACNGT | 6 cut(s) | 199, 637, 1333, 1343, 1381, 1493 |
| TaiI | ACGT | 2 cut(s) | 1442, 1465 |
| TaqI | TCGA | 4 cut(s) | 9, 1254, 1353, 1495 |
| TasI | AATT | 9 cut(s) | 213, 364, 533, 695, 773, 849, 858, 1062, 1105 |
| TatI | WGTACW | 2 cut(s) | 345, 1469 |
| TfiI | GAWTC | 3 cut(s) | 31, 943, 1373 |
| Tru1I | TTAA | 3 cut(s) | 167, 959, 1146 |
| Tru9I | TTAA | 3 cut(s) | 167, 959, 1146 |
| TscAI | CASTG | 2 cut(s) | 421, 974 |
| TseFI | GTSAC | 4 cut(s) | 58, 397, 751, 1196 |
| TseI | GCWGC | 2 cut(s) | 473, 476 |
| Tsp45I | GTSAC | 4 cut(s) | 58, 397, 751, 1196 |
| TspDTI | ATGAA | 8 cut(s) | 471, 519, 690, 716, 888, 912, 938, 948 |
| TspGWI | ACGGA | 1 cut(s) | 5 |
| TspRI | CASTG | 2 cut(s) | 421, 974 |
| Tth111I | GACNNNGTC | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 3 cut(s) | 964, 1044, 1295 |
| XapI | RAATTY | 4 cut(s) | 364, 533, 773, 1062 |
| XceI | RCATGY | 5 cut(s) | 322, 618, 763, 804, 1158 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 958 |
| XmiI | GTMKAC | 3 cut(s) | 194, 378, 1254 |
| XspI | CTAG | 1 cut(s) | 1041 |
| ZraI | GACGTC | 1 cut(s) | 1463 |
| Zsp2I | ATGCAT | 3 cut(s) | 320, 616, 1234 |