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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 478 |
| AccI | GTMKAC | 1 cut(s) | 693 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AciI | CCGC | 3 cut(s) | 359, 563, 873 |
| AclWI | GGATC | 2 cut(s) | 513, 682 |
| AcsI | RAATTY | 2 cut(s) | 11, 1108 |
| AfaI | GTAC | 4 cut(s) | 46, 73, 144, 767 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 857, 1153 |
| AflIII | ACRYGT | 1 cut(s) | 443 |
| AgsI | TTSAA | 6 cut(s) | 199, 322, 622, 632, 730, 787 |
| AhlI | ACTAGT | 1 cut(s) | 145 |
| AjnI | CCWGG | 2 cut(s) | 902, 1126 |
| AluBI | AGCT | 7 cut(s) | 59, 272, 517, 605, 625, 803, 865 |
| AluI | AGCT | 7 cut(s) | 59, 272, 517, 605, 625, 803, 865 |
| Alw21I | GWGCWC | 1 cut(s) | 941 |
| AlwI | GGATC | 2 cut(s) | 513, 682 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 970 |
| Ama87I | CYCGRG | 1 cut(s) | 776 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| AoxI | GGCC | 3 cut(s) | 37, 594, 1036 |
| ApeKI | GCWGC | 7 cut(s) | 59, 155, 272, 312, 589, 614, 625 |
| ApoI | RAATTY | 2 cut(s) | 11, 1108 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 956, 1200 |
| AspS9I | GGNCC | 5 cut(s) | 38, 636, 1011, 1144, 1219 |
| AsuHPI | GGTGA | 5 cut(s) | 20, 38, 182, 352, 430 |
| AsuNHI | GCTAGC | 1 cut(s) | 386 |
| AvaI | CYCGRG | 1 cut(s) | 776 |
| AvaII | GGWCC | 4 cut(s) | 636, 1011, 1144, 1219 |
| BaeGI | GKGCMC | 1 cut(s) | 481 |
| BanI | GGYRCC | 1 cut(s) | 478 |
| BbsI | GAAGAC | 2 cut(s) | 428, 794 |
| Bbv12I | GWGCWC | 1 cut(s) | 941 |
| BbvI | GCAGC | 7 cut(s) | 46, 167, 259, 299, 601, 612, 626 |
| BccI | CCATC | 7 cut(s) | 161, 297, 409, 647, 925, 1002, 1086 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 365, 399 |
| BciT130I | CCWGG | 2 cut(s) | 904, 1128 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcuI | ACTAGT | 1 cut(s) | 145 |
| BfaI | CTAG | 5 cut(s) | 146, 387, 450, 657, 738 |
| BfmI | CTRYAG | 1 cut(s) | 598 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BisI | GCNGC | 7 cut(s) | 60, 156, 273, 313, 590, 615, 626 |
| BlsI | GCNGC | 7 cut(s) | 61, 157, 274, 314, 591, 616, 627 |
| BmcAI | AGTACT | 2 cut(s) | 73, 144 |
| Bme1390I | CCNGG | 2 cut(s) | 904, 1128 |
| Bme18I | GGWCC | 4 cut(s) | 636, 1011, 1144, 1219 |
| BmeT110I | CYCGRG | 1 cut(s) | 776 |
| BmgT120I | GGNCC | 5 cut(s) | 38, 636, 1011, 1144, 1219 |
| BmiI | GGNNCC | 2 cut(s) | 480, 1221 |
| BmrFI | CCNGG | 2 cut(s) | 904, 1128 |
| BmsI | GCATC | 4 cut(s) | 260, 724, 797, 877 |
| BmtI | GCTAGC | 1 cut(s) | 390 |
| BpiI | GAAGAC | 2 cut(s) | 428, 794 |
| BpuEI | CTTGAG | 2 cut(s) | 286, 906 |
| BsaBI | GATNNNNATC | 2 cut(s) | 767, 811 |
| BsaJI | CCNNGG | 3 cut(s) | 775, 903, 1176 |
| BsaWI | WCCGGW | 1 cut(s) | 190 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 857, 1153 |
| Bse1I | ACTGG | 1 cut(s) | 796 |
| Bse8I | GATNNNNATC | 2 cut(s) | 767, 811 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 2 cut(s) | 904, 1128 |
| BseDI | CCNNGG | 3 cut(s) | 775, 903, 1176 |
| BseGI | GGATG | 7 cut(s) | 10, 187, 246, 308, 768, 812, 1013 |
| BseJI | GATNNNNATC | 2 cut(s) | 767, 811 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 857, 1153 |
| BseNI | ACTGG | 1 cut(s) | 796 |
| BseSI | GKGCMC | 1 cut(s) | 481 |
| BseXI | GCAGC | 7 cut(s) | 46, 167, 259, 299, 601, 612, 626 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| BshFI | GGCC | 3 cut(s) | 39, 596, 1038 |
| BshNI | GGYRCC | 1 cut(s) | 478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 941 |
| BsiHKCI | CYCGRG | 1 cut(s) | 776 |
| BsiSI | CCGG | 1 cut(s) | 191 |
| BslFI | GGGAC | 1 cut(s) | 680 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 857, 1153 |
| BsmFI | GGGAC | 1 cut(s) | 680 |
| BsmI | GAATGC | 1 cut(s) | 314 |
| BsnI | GGCC | 3 cut(s) | 39, 596, 1038 |
| BsoBI | CYCGRG | 1 cut(s) | 776 |
| Bsp1286I | GDGCHC | 2 cut(s) | 481, 941 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp1407I | TGTACA | 1 cut(s) | 765 |
| Bsp143I | GATC | 4 cut(s) | 505, 510, 674, 812 |
| BspACI | CCGC | 3 cut(s) | 359, 563, 873 |
| BspANI | GGCC | 3 cut(s) | 39, 596, 1038 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspLI | GGNNCC | 2 cut(s) | 480, 1221 |
| BspOI | GCTAGC | 1 cut(s) | 390 |
| BspPI | GGATC | 2 cut(s) | 513, 682 |
| BspT107I | GGYRCC | 1 cut(s) | 478 |
| BsrGI | TGTACA | 1 cut(s) | 765 |
| BsrI | ACTGG | 1 cut(s) | 796 |
| BssECI | CCNNGG | 3 cut(s) | 775, 903, 1176 |
| BssMI | GATC | 4 cut(s) | 505, 510, 674, 812 |
| BssT1I | CCWWGG | 1 cut(s) | 1176 |
| Bst2UI | CCWGG | 2 cut(s) | 904, 1128 |
| Bst4CI | ACNGT | 5 cut(s) | 76, 228, 709, 833, 966 |
| Bst6I | CTCTTC | 2 cut(s) | 78, 317 |
| BstAUI | TGTACA | 1 cut(s) | 765 |
| BstC8I | GCNNGC | 2 cut(s) | 388, 594 |
| BstDEI | CTNAG | 2 cut(s) | 606, 982 |
| BstF5I | GGATG | 7 cut(s) | 10, 187, 246, 308, 768, 812, 1013 |
| BstKTI | GATC | 4 cut(s) | 508, 513, 677, 815 |
| BstMBI | GATC | 4 cut(s) | 505, 510, 674, 812 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 602, 611 |
| BstNI | CCWGG | 2 cut(s) | 904, 1128 |
| BstNSI | RCATGY | 1 cut(s) | 447 |
| BstSCI | CCNGG | 2 cut(s) | 902, 1126 |
| BstSFI | CTRYAG | 1 cut(s) | 598 |
| BstSLI | GKGCMC | 1 cut(s) | 481 |
| BstV1I | GCAGC | 7 cut(s) | 46, 167, 259, 299, 601, 612, 626 |
| BstV2I | GAAGAC | 2 cut(s) | 428, 794 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 3 cut(s) | 39, 596, 1038 |
| BtsCI | GGATG | 7 cut(s) | 10, 187, 246, 308, 768, 812, 1013 |
| BtsIMutI | CAGTG | 2 cut(s) | 714, 1027 |
| Cac8I | GCNNGC | 2 cut(s) | 388, 594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 970 |
| Cfr13I | GGNCC | 5 cut(s) | 38, 636, 1011, 1144, 1219 |
| Csp6I | GTAC | 4 cut(s) | 45, 72, 143, 766 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 889, 924 |
| CviQI | GTAC | 4 cut(s) | 45, 72, 143, 766 |
| DdeI | CTNAG | 2 cut(s) | 606, 982 |
| DpnI | GATC | 4 cut(s) | 507, 512, 676, 814 |
| DpnII | GATC | 4 cut(s) | 505, 510, 674, 812 |
| DraI | TTTAAA | 3 cut(s) | 757, 799, 843 |
| Eam1104I | CTCTTC | 2 cut(s) | 78, 317 |
| EarI | CTCTTC | 2 cut(s) | 78, 317 |
| Eco130I | CCWWGG | 1 cut(s) | 1176 |
| Eco147I | AGGCCT | 2 cut(s) | 596, 1038 |
| Eco47I | GGWCC | 4 cut(s) | 636, 1011, 1144, 1219 |
| Eco88I | CYCGRG | 1 cut(s) | 776 |
| EcoRII | CCWGG | 2 cut(s) | 902, 1126 |
| EcoT14I | CCWWGG | 1 cut(s) | 1176 |
| ErhI | CCWWGG | 1 cut(s) | 1176 |
| FaqI | GGGAC | 1 cut(s) | 680 |
| FauI | CCCGC | 1 cut(s) | 556 |
| FauNDI | CATATG | 1 cut(s) | 916 |
| FblI | GTMKAC | 1 cut(s) | 693 |
| Fnu4HI | GCNGC | 7 cut(s) | 60, 156, 273, 313, 590, 615, 626 |
| FokI | GGATG | 7 cut(s) | 17, 194, 253, 315, 775, 819, 1020 |
| Fsp4HI | GCNGC | 7 cut(s) | 60, 156, 273, 313, 590, 615, 626 |
| FspBI | CTAG | 5 cut(s) | 146, 387, 450, 657, 738 |
| GluI | GCNGC | 7 cut(s) | 60, 156, 273, 313, 590, 615, 626 |
| HaeIII | GGCC | 3 cut(s) | 39, 596, 1038 |
| HapII | CCGG | 1 cut(s) | 191 |
| HincII | GTYRAC | 3 cut(s) | 408, 463, 1170 |
| HindII | GTYRAC | 3 cut(s) | 408, 463, 1170 |
| HinfI | GANTC | 6 cut(s) | 128, 404, 539, 847, 944, 1055 |
| HpaII | CCGG | 1 cut(s) | 191 |
| HphI | GGTGA | 5 cut(s) | 20, 38, 182, 352, 430 |
| Hpy166II | GTNNAC | 6 cut(s) | 408, 463, 694, 712, 860, 1170 |
| Hpy188I | TCNGA | 4 cut(s) | 133, 166, 510, 679 |
| Hpy188III | TCNNGA | 3 cut(s) | 191, 265, 524 |
| Hpy8I | GTNNAC | 6 cut(s) | 408, 463, 694, 712, 860, 1170 |
| HpyAV | CCTTC | 2 cut(s) | 382, 1135 |
| HpyCH4III | ACNGT | 5 cut(s) | 76, 228, 709, 833, 966 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 602, 611 |
| HpyF3I | CTNAG | 2 cut(s) | 606, 982 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| Kzo9I | GATC | 4 cut(s) | 505, 510, 674, 812 |
| LmnI | GCTCC | 2 cut(s) | 646, 870 |
| Lsp1109I | GCAGC | 7 cut(s) | 46, 167, 259, 299, 601, 612, 626 |
| LweI | GCATC | 4 cut(s) | 260, 724, 797, 877 |
| MaeI | CTAG | 5 cut(s) | 146, 387, 450, 657, 738 |
| MaeIII | GTNAC | 2 cut(s) | 209, 1022 |
| MalI | GATC | 4 cut(s) | 507, 512, 676, 814 |
| MboI | GATC | 4 cut(s) | 505, 510, 674, 812 |
| MboII | GAAGA | 6 cut(s) | 95, 119, 229, 334, 433, 799 |
| MhlI | GDGCHC | 2 cut(s) | 481, 941 |
| MluCI | AATT | 2 cut(s) | 11, 1108 |
| MlyI | GAGTC | 4 cut(s) | 413, 856, 938, 1064 |
| MmeI | TCCRAC | 1 cut(s) | 46 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 2 cut(s) | 956, 1200 |
| MseI | TTAA | 5 cut(s) | 231, 278, 756, 798, 842 |
| MspA1I | CMGCKG | 1 cut(s) | 563 |
| MspI | CCGG | 1 cut(s) | 191 |
| MspR9I | CCNGG | 2 cut(s) | 904, 1128 |
| Mva1269I | GAATGC | 1 cut(s) | 314 |
| MvaI | CCWGG | 2 cut(s) | 904, 1128 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 602, 611 |
| NdeI | CATATG | 1 cut(s) | 916 |
| NdeII | GATC | 4 cut(s) | 505, 510, 674, 812 |
| NheI | GCTAGC | 1 cut(s) | 386 |
| NlaIV | GGNNCC | 2 cut(s) | 480, 1221 |
| NmuCI | GTSAC | 2 cut(s) | 209, 1022 |
| NspI | RCATGY | 1 cut(s) | 447 |
| PceI | AGGCCT | 2 cut(s) | 596, 1038 |
| PciI | ACATGT | 1 cut(s) | 443 |
| PctI | GAATGC | 1 cut(s) | 314 |
| PdmI | GAANNNNTTC | 2 cut(s) | 956, 1200 |
| PfeI | GAWTC | 2 cut(s) | 128, 539 |
| PkrI | GCNGC | 7 cut(s) | 61, 157, 274, 314, 591, 616, 627 |
| PleI | GAGTC | 4 cut(s) | 412, 855, 938, 1063 |
| PpsI | GAGTC | 4 cut(s) | 412, 855, 938, 1063 |
| PscI | ACATGT | 1 cut(s) | 443 |
| Psp6I | CCWGG | 2 cut(s) | 902, 1126 |
| PspGI | CCWGG | 2 cut(s) | 902, 1126 |
| PspN4I | GGNNCC | 2 cut(s) | 480, 1221 |
| PspPI | GGNCC | 5 cut(s) | 38, 636, 1011, 1144, 1219 |
| PstNI | CAGNNNCTG | 1 cut(s) | 970 |
| RsaI | GTAC | 4 cut(s) | 46, 73, 144, 767 |
| RsaNI | GTAC | 4 cut(s) | 45, 72, 143, 766 |
| SaqAI | TTAA | 5 cut(s) | 231, 278, 756, 798, 842 |
| SatI | GCNGC | 7 cut(s) | 60, 156, 273, 313, 590, 615, 626 |
| Sau3AI | GATC | 4 cut(s) | 505, 510, 674, 812 |
| Sau96I | GGNCC | 5 cut(s) | 38, 636, 1011, 1144, 1219 |
| ScaI | AGTACT | 2 cut(s) | 73, 144 |
| SchI | GAGTC | 4 cut(s) | 413, 856, 938, 1064 |
| ScrFI | CCNGG | 2 cut(s) | 904, 1128 |
| SduI | GDGCHC | 2 cut(s) | 481, 941 |
| SfaNI | GCATC | 4 cut(s) | 260, 724, 797, 877 |
| SfcI | CTRYAG | 1 cut(s) | 598 |
| SinI | GGWCC | 4 cut(s) | 636, 1011, 1144, 1219 |
| SmlI | CTYRAG | 2 cut(s) | 265, 921 |
| SmoI | CTYRAG | 2 cut(s) | 265, 921 |
| SpeI | ACTAGT | 1 cut(s) | 145 |
| Sse9I | AATT | 2 cut(s) | 11, 1108 |
| SseBI | AGGCCT | 2 cut(s) | 596, 1038 |
| SsiI | CCGC | 3 cut(s) | 359, 563, 873 |
| SspMI | CTAG | 5 cut(s) | 146, 387, 450, 657, 738 |
| StuI | AGGCCT | 2 cut(s) | 596, 1038 |
| StyD4I | CCNGG | 2 cut(s) | 902, 1126 |
| StyI | CCWWGG | 1 cut(s) | 1176 |
| TaaI | ACNGT | 5 cut(s) | 76, 228, 709, 833, 966 |
| TaqI | TCGA | 2 cut(s) | 96, 375 |
| TasI | AATT | 2 cut(s) | 11, 1108 |
| TatI | WGTACW | 4 cut(s) | 44, 71, 142, 765 |
| TfiI | GAWTC | 2 cut(s) | 128, 539 |
| Tru1I | TTAA | 5 cut(s) | 231, 278, 756, 798, 842 |
| Tru9I | TTAA | 5 cut(s) | 231, 278, 756, 798, 842 |
| TscAI | CASTG | 2 cut(s) | 714, 1027 |
| TseFI | GTSAC | 2 cut(s) | 209, 1022 |
| TseI | GCWGC | 7 cut(s) | 59, 155, 272, 312, 589, 614, 625 |
| Tsp45I | GTSAC | 2 cut(s) | 209, 1022 |
| TspDTI | ATGAA | 5 cut(s) | 120, 230, 257, 446, 1154 |
| TspRI | CASTG | 2 cut(s) | 714, 1027 |
| VpaK11BI | GGWCC | 4 cut(s) | 636, 1011, 1144, 1219 |
| XapI | RAATTY | 2 cut(s) | 11, 1108 |
| XceI | RCATGY | 1 cut(s) | 447 |
| XmiI | GTMKAC | 1 cut(s) | 693 |
| XmnI | GAANNNNTTC | 2 cut(s) | 956, 1200 |
| XspI | CTAG | 5 cut(s) | 146, 387, 450, 657, 738 |
| ZrmI | AGTACT | 2 cut(s) | 73, 144 |