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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 568 |
| AclWI | GGATC | 3 cut(s) | 117, 299, 1372 |
| AcsI | RAATTY | 2 cut(s) | 671, 1408 |
| AcuI | CTGAAG | 3 cut(s) | 699, 1059, 1291 |
| AfaI | GTAC | 3 cut(s) | 11, 140, 1127 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 407, 656, 787 |
| AleI | CACNNNNGTG | 1 cut(s) | 1403 |
| Alw26I | GTCTC | 1 cut(s) | 1112 |
| AlwI | GGATC | 3 cut(s) | 117, 299, 1372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 92 |
| AoxI | GGCC | 3 cut(s) | 398, 647, 848 |
| ApeKI | GCWGC | 8 cut(s) | 151, 526, 686, 728, 836, 869, 1046, 1085 |
| ApoI | RAATTY | 2 cut(s) | 671, 1408 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 858, 891 |
| AspA2I | CCTAGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 455, 1417 |
| AvrII | CCTAGG | 1 cut(s) | 155 |
| BanI | GGYRCC | 1 cut(s) | 568 |
| BanII | GRGCYC | 1 cut(s) | 623 |
| BbsI | GAAGAC | 2 cut(s) | 227, 232 |
| BbvCI | CCTCAGC | 1 cut(s) | 279 |
| BbvI | GCAGC | 8 cut(s) | 138, 538, 698, 715, 848, 881, 1033, 1072 |
| BccI | CCATC | 5 cut(s) | 29, 50, 208, 467, 971 |
| BceAI | ACGGC | 1 cut(s) | 634 |
| BclI | TGATCA | 1 cut(s) | 1222 |
| BcoDI | GTCTC | 1 cut(s) | 1112 |
| BfaI | CTAG | 7 cut(s) | 21, 53, 62, 156, 423, 585, 624 |
| BfmI | CTRYAG | 2 cut(s) | 166, 768 |
| BglII | AGATCT | 1 cut(s) | 296 |
| BisI | GCNGC | 8 cut(s) | 152, 527, 687, 729, 837, 870, 1047, 1086 |
| BlnI | CCTAGG | 1 cut(s) | 155 |
| BlsI | GCNGC | 8 cut(s) | 153, 528, 688, 730, 838, 871, 1048, 1087 |
| BmiI | GGNNCC | 2 cut(s) | 570, 620 |
| BmsI | GCATC | 8 cut(s) | 171, 193, 358, 716, 746, 1058, 1097, 1318 |
| BpiI | GAAGAC | 2 cut(s) | 227, 232 |
| BpmI | CTGGAG | 3 cut(s) | 687, 1098, 1353 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 6 cut(s) | 230, 717, 726, 813, 900, 1165 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 650 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1109, 1139 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 407, 656, 787 |
| Bse1I | ACTGG | 3 cut(s) | 253, 1081, 1249 |
| BseDI | CCNNGG | 2 cut(s) | 155, 650 |
| BseGI | GGATG | 6 cut(s) | 40, 186, 339, 707, 1049, 1088 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 407, 656, 787 |
| BseMII | CTCAG | 3 cut(s) | 270, 507, 1227 |
| BseNI | ACTGG | 3 cut(s) | 253, 1081, 1249 |
| BseRI | GAGGAG | 5 cut(s) | 296, 299, 536, 1095, 1326 |
| BseXI | GCAGC | 8 cut(s) | 138, 538, 698, 715, 848, 881, 1033, 1072 |
| BseYI | CCCAGC | 1 cut(s) | 711 |
| BshFI | GGCC | 3 cut(s) | 400, 649, 850 |
| BshNI | GGYRCC | 1 cut(s) | 568 |
| BslFI | GGGAC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 407, 656, 787 |
| BsmAI | GTCTC | 1 cut(s) | 1112 |
| BsmFI | GGGAC | 1 cut(s) | 55 |
| BsnI | GGCC | 3 cut(s) | 400, 649, 850 |
| Bsp1286I | GDGCHC | 1 cut(s) | 623 |
| Bsp143I | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| BspANI | GGCC | 3 cut(s) | 400, 649, 850 |
| BspCNI | CTCAG | 3 cut(s) | 271, 506, 1226 |
| BspLI | GGNNCC | 2 cut(s) | 570, 620 |
| BspMAI | CTGCAG | 1 cut(s) | 170 |
| BspPI | GGATC | 3 cut(s) | 117, 299, 1372 |
| BspQI | GCTCTTC | 1 cut(s) | 1383 |
| BspT107I | GGYRCC | 1 cut(s) | 568 |
| BsrI | ACTGG | 3 cut(s) | 253, 1081, 1249 |
| BssECI | CCNNGG | 2 cut(s) | 155, 650 |
| BssMI | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| BssT1I | CCWWGG | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 1 cut(s) | 1175 |
| Bst6I | CTCTTC | 5 cut(s) | 638, 961, 1161, 1281, 1383 |
| BstC8I | GCNNGC | 1 cut(s) | 455 |
| BstDEI | CTNAG | 5 cut(s) | 113, 279, 493, 557, 1213 |
| BstDSI | CCRYGG | 1 cut(s) | 650 |
| BstF5I | GGATG | 6 cut(s) | 40, 186, 339, 707, 1049, 1088 |
| BstKTI | GATC | 7 cut(s) | 112, 299, 307, 787, 1109, 1225, 1367 |
| BstMAI | GTCTC | 1 cut(s) | 1112 |
| BstMBI | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 397, 734, 1043 |
| BstSFI | CTRYAG | 2 cut(s) | 166, 768 |
| BstV1I | GCAGC | 8 cut(s) | 138, 538, 698, 715, 848, 881, 1033, 1072 |
| BstV2I | GAAGAC | 2 cut(s) | 227, 232 |
| BstX2I | RGATCY | 3 cut(s) | 109, 296, 1364 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1282 |
| BstYI | RGATCY | 3 cut(s) | 109, 296, 1364 |
| BsuRI | GGCC | 3 cut(s) | 400, 649, 850 |
| BtgI | CCRYGG | 1 cut(s) | 650 |
| BtsCI | GGATG | 6 cut(s) | 40, 186, 339, 707, 1049, 1088 |
| BtsI | GCAGTG | 1 cut(s) | 175 |
| BtsIMutI | CAGTG | 3 cut(s) | 175, 1015, 1180 |
| Cac8I | GCNNGC | 1 cut(s) | 455 |
| CaiI | CAGNNNCTG | 1 cut(s) | 92 |
| Csp6I | GTAC | 3 cut(s) | 10, 139, 1126 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 19, 54 |
| CviAII | CATG | 5 cut(s) | 81, 460, 607, 635, 879 |
| CviQI | GTAC | 3 cut(s) | 10, 139, 1126 |
| DdeI | CTNAG | 5 cut(s) | 113, 279, 493, 557, 1213 |
| DpnI | GATC | 7 cut(s) | 111, 298, 306, 786, 1108, 1224, 1366 |
| DpnII | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| Eam1104I | CTCTTC | 5 cut(s) | 638, 961, 1161, 1281, 1383 |
| EarI | CTCTTC | 5 cut(s) | 638, 961, 1161, 1281, 1383 |
| Eco130I | CCWWGG | 1 cut(s) | 155 |
| Eco147I | AGGCCT | 1 cut(s) | 850 |
| Eco24I | GRGCYC | 1 cut(s) | 623 |
| Eco57I | CTGAAG | 3 cut(s) | 699, 1059, 1291 |
| EcoT14I | CCWWGG | 1 cut(s) | 155 |
| EcoT38I | GRGCYC | 1 cut(s) | 623 |
| ErhI | CCWWGG | 1 cut(s) | 155 |
| FaeI | CATG | 5 cut(s) | 84, 463, 610, 638, 882 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1377, 1409 |
| FaqI | GGGAC | 1 cut(s) | 55 |
| FatI | CATG | 5 cut(s) | 80, 459, 606, 634, 878 |
| FbaI | TGATCA | 1 cut(s) | 1222 |
| Fnu4HI | GCNGC | 8 cut(s) | 152, 527, 687, 729, 837, 870, 1047, 1086 |
| FokI | GGATG | 6 cut(s) | 47, 193, 346, 694, 1036, 1075 |
| FriOI | GRGCYC | 1 cut(s) | 623 |
| Fsp4HI | GCNGC | 8 cut(s) | 152, 527, 687, 729, 837, 870, 1047, 1086 |
| FspBI | CTAG | 7 cut(s) | 21, 53, 62, 156, 423, 585, 624 |
| GluI | GCNGC | 8 cut(s) | 152, 527, 687, 729, 837, 870, 1047, 1086 |
| GsaI | CCCAGC | 1 cut(s) | 715 |
| GsuI | CTGGAG | 3 cut(s) | 687, 1098, 1353 |
| HaeIII | GGCC | 3 cut(s) | 400, 649, 850 |
| Hin1II | CATG | 5 cut(s) | 84, 463, 610, 638, 882 |
| HinfI | GANTC | 5 cut(s) | 89, 319, 491, 1178, 1211 |
| HphI | GGTGA | 3 cut(s) | 229, 455, 1417 |
| Hpy188I | TCNGA | 6 cut(s) | 496, 679, 886, 1198, 1216, 1310 |
| Hpy188III | TCNNGA | 8 cut(s) | 62, 308, 830, 863, 896, 917, 1188, 1368 |
| HpyAV | CCTTC | 8 cut(s) | 255, 440, 458, 674, 1024, 1034, 1063, 1093 |
| HpyCH4III | ACNGT | 1 cut(s) | 1175 |
| HpyCH4V | TGCA | 5 cut(s) | 80, 168, 206, 1049, 1088 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 397, 734, 1043 |
| HpyF3I | CTNAG | 5 cut(s) | 113, 279, 493, 557, 1213 |
| Hsp92II | CATG | 5 cut(s) | 84, 463, 610, 638, 882 |
| Ksp22I | TGATCA | 1 cut(s) | 1222 |
| Kzo9I | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| LguI | GCTCTTC | 1 cut(s) | 1383 |
| LmnI | GCTCC | 7 cut(s) | 523, 610, 618, 706, 990, 1043, 1082 |
| Lsp1109I | GCAGC | 8 cut(s) | 138, 538, 698, 715, 848, 881, 1033, 1072 |
| LweI | GCATC | 8 cut(s) | 171, 193, 358, 716, 746, 1058, 1097, 1318 |
| MaeI | CTAG | 7 cut(s) | 21, 53, 62, 156, 423, 585, 624 |
| MaeIII | GTNAC | 4 cut(s) | 560, 602, 1072, 1175 |
| MalI | GATC | 7 cut(s) | 111, 298, 306, 786, 1108, 1224, 1366 |
| MboI | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| MfeI | CAATTG | 1 cut(s) | 753 |
| MflI | RGATCY | 3 cut(s) | 109, 296, 1364 |
| MhlI | GDGCHC | 1 cut(s) | 623 |
| MluCI | AATT | 5 cut(s) | 45, 484, 671, 753, 1408 |
| MlyI | GAGTC | 4 cut(s) | 98, 485, 1172, 1205 |
| MmeI | TCCRAC | 1 cut(s) | 158 |
| MroXI | GAANNNNTTC | 2 cut(s) | 858, 891 |
| MseI | TTAA | 5 cut(s) | 432, 549, 669, 797, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1403 |
| MunI | CAATTG | 1 cut(s) | 753 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 397, 734, 1043 |
| NdeII | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| NlaIII | CATG | 5 cut(s) | 84, 463, 610, 638, 882 |
| NlaIV | GGNNCC | 2 cut(s) | 570, 620 |
| NmuCI | GTSAC | 3 cut(s) | 560, 602, 1175 |
| OliI | CACNNNNGTG | 1 cut(s) | 1403 |
| PceI | AGGCCT | 1 cut(s) | 850 |
| PciSI | GCTCTTC | 1 cut(s) | 1383 |
| PdmI | GAANNNNTTC | 2 cut(s) | 858, 891 |
| PfeI | GAWTC | 1 cut(s) | 319 |
| PflFI | GACNNNGTC | 1 cut(s) | 88 |
| PkrI | GCNGC | 8 cut(s) | 153, 528, 688, 730, 838, 871, 1048, 1087 |
| PleI | GAGTC | 4 cut(s) | 97, 485, 1172, 1205 |
| PpsI | GAGTC | 4 cut(s) | 97, 485, 1172, 1205 |
| PspFI | CCCAGC | 1 cut(s) | 711 |
| PspN4I | GGNNCC | 2 cut(s) | 570, 620 |
| PstI | CTGCAG | 1 cut(s) | 170 |
| PstNI | CAGNNNCTG | 1 cut(s) | 92 |
| PsuI | RGATCY | 3 cut(s) | 109, 296, 1364 |
| PsyI | GACNNNGTC | 1 cut(s) | 88 |
| RsaI | GTAC | 3 cut(s) | 11, 140, 1127 |
| RsaNI | GTAC | 3 cut(s) | 10, 139, 1126 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1403 |
| SapI | GCTCTTC | 1 cut(s) | 1383 |
| SaqAI | TTAA | 5 cut(s) | 432, 549, 669, 797, 945 |
| SatI | GCNGC | 8 cut(s) | 152, 527, 687, 729, 837, 870, 1047, 1086 |
| Sau3AI | GATC | 7 cut(s) | 109, 296, 304, 784, 1106, 1222, 1364 |
| SchI | GAGTC | 4 cut(s) | 98, 485, 1172, 1205 |
| SduI | GDGCHC | 1 cut(s) | 623 |
| SfaNI | GCATC | 8 cut(s) | 171, 193, 358, 716, 746, 1058, 1097, 1318 |
| SfcI | CTRYAG | 2 cut(s) | 166, 768 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1403 |
| SmlI | CTYRAG | 6 cut(s) | 209, 732, 741, 828, 915, 1180 |
| SmoI | CTYRAG | 6 cut(s) | 209, 732, 741, 828, 915, 1180 |
| Sse9I | AATT | 5 cut(s) | 45, 484, 671, 753, 1408 |
| SseBI | AGGCCT | 1 cut(s) | 850 |
| SspI | AATATT | 1 cut(s) | 376 |
| SspMI | CTAG | 7 cut(s) | 21, 53, 62, 156, 423, 585, 624 |
| StuI | AGGCCT | 1 cut(s) | 850 |
| StyI | CCWWGG | 1 cut(s) | 155 |
| TaaI | ACNGT | 1 cut(s) | 1175 |
| TaqI | TCGA | 1 cut(s) | 1209 |
| TasI | AATT | 5 cut(s) | 45, 484, 671, 753, 1408 |
| TatI | WGTACW | 1 cut(s) | 9 |
| TfiI | GAWTC | 1 cut(s) | 319 |
| Tru1I | TTAA | 5 cut(s) | 432, 549, 669, 797, 945 |
| Tru9I | TTAA | 5 cut(s) | 432, 549, 669, 797, 945 |
| TscAI | CASTG | 3 cut(s) | 175, 1015, 1180 |
| TseFI | GTSAC | 3 cut(s) | 560, 602, 1175 |
| TseI | GCWGC | 8 cut(s) | 151, 526, 686, 728, 836, 869, 1046, 1085 |
| Tsp45I | GTSAC | 3 cut(s) | 560, 602, 1175 |
| TspDTI | ATGAA | 5 cut(s) | 17, 232, 521, 612, 1398 |
| TspRI | CASTG | 3 cut(s) | 175, 1015, 1180 |
| Tth111I | GACNNNGTC | 1 cut(s) | 88 |
| XapI | RAATTY | 2 cut(s) | 671, 1408 |
| XbaI | TCTAGA | 1 cut(s) | 61 |
| XmaJI | CCTAGG | 1 cut(s) | 155 |
| XmnI | GAANNNNTTC | 2 cut(s) | 858, 891 |
| XspI | CTAG | 7 cut(s) | 21, 53, 62, 156, 423, 585, 624 |