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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 266, 627 |
| AclWI | GGATC | 1 cut(s) | 108 |
| AcoI | YGGCCR | 1 cut(s) | 218 |
| AcsI | RAATTY | 1 cut(s) | 88 |
| AcuI | CTGAAG | 1 cut(s) | 244 |
| AfaI | GTAC | 1 cut(s) | 377 |
| AflII | CTTAAG | 1 cut(s) | 71 |
| AgsI | TTSAA | 6 cut(s) | 94, 313, 328, 495, 521, 562 |
| AjnI | CCWGG | 1 cut(s) | 161 |
| AleI | CACNNNNGTG | 1 cut(s) | 573 |
| AluBI | AGCT | 2 cut(s) | 124, 149 |
| AluI | AGCT | 2 cut(s) | 124, 149 |
| AlwI | GGATC | 1 cut(s) | 108 |
| AoxI | GGCC | 1 cut(s) | 218 |
| ApoI | RAATTY | 1 cut(s) | 88 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 439, 471 |
| AseI | ATTAAT | 1 cut(s) | 389 |
| AspS9I | GGNCC | 2 cut(s) | 318, 437 |
| AvaII | GGWCC | 2 cut(s) | 318, 437 |
| BalI | TGGCCA | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 229 |
| BciT130I | CCWGG | 1 cut(s) | 163 |
| BclI | TGATCA | 1 cut(s) | 427 |
| BfaI | CTAG | 2 cut(s) | 249, 333 |
| BfmI | CTRYAG | 2 cut(s) | 411, 654 |
| BfrI | CTTAAG | 1 cut(s) | 71 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| Bme18I | GGWCC | 2 cut(s) | 318, 437 |
| BmgT120I | GGNCC | 2 cut(s) | 318, 437 |
| BmiI | GGNNCC | 1 cut(s) | 438 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BmsI | GCATC | 2 cut(s) | 177, 404 |
| BsaBI | GATNNNNATC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 643 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 260, 290 |
| Bse1I | ACTGG | 1 cut(s) | 613 |
| Bse3DI | GCAATG | 1 cut(s) | 64 |
| Bse8I | GATNNNNATC | 1 cut(s) | 33 |
| BseBI | CCWGG | 1 cut(s) | 163 |
| BseDI | CCNNGG | 2 cut(s) | 161, 643 |
| BseGI | GGATG | 1 cut(s) | 192 |
| BseJI | GATNNNNATC | 1 cut(s) | 33 |
| BseMI | GCAATG | 1 cut(s) | 64 |
| BseNI | ACTGG | 1 cut(s) | 613 |
| BshFI | GGCC | 1 cut(s) | 220 |
| BslFI | GGGAC | 1 cut(s) | 350 |
| BsmFI | GGGAC | 1 cut(s) | 350 |
| BsmI | GAATGC | 3 cut(s) | 308, 334, 568 |
| BsnI | GGCC | 1 cut(s) | 220 |
| Bsp1407I | TGTACA | 1 cut(s) | 375 |
| Bsp143I | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| Bsp19I | CCATGG | 1 cut(s) | 643 |
| BspACI | CCGC | 2 cut(s) | 266, 627 |
| BspANI | GGCC | 1 cut(s) | 220 |
| BspLI | GGNNCC | 1 cut(s) | 438 |
| BspMAI | CTGCAG | 1 cut(s) | 658 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BspTI | CTTAAG | 1 cut(s) | 71 |
| BsrDI | GCAATG | 1 cut(s) | 64 |
| BsrGI | TGTACA | 1 cut(s) | 375 |
| BsrI | ACTGG | 1 cut(s) | 613 |
| BssECI | CCNNGG | 2 cut(s) | 161, 643 |
| BssMI | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| BssT1I | CCWWGG | 1 cut(s) | 643 |
| Bst2UI | CCWGG | 1 cut(s) | 163 |
| Bst6I | CTCTTC | 1 cut(s) | 176 |
| BstAFI | CTTAAG | 1 cut(s) | 71 |
| BstAUI | TGTACA | 1 cut(s) | 375 |
| BstC8I | GCNNGC | 1 cut(s) | 501 |
| BstDEI | CTNAG | 1 cut(s) | 225 |
| BstDSI | CCRYGG | 1 cut(s) | 643 |
| BstF5I | GGATG | 1 cut(s) | 192 |
| BstKTI | GATC | 5 cut(s) | 37, 103, 254, 430, 587 |
| BstMBI | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 505, 626 |
| BstNI | CCWGG | 1 cut(s) | 163 |
| BstNSI | RCATGY | 1 cut(s) | 503 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstSFI | CTRYAG | 2 cut(s) | 411, 654 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 243, 575 |
| BsuRI | GGCC | 1 cut(s) | 220 |
| BtgI | CCRYGG | 1 cut(s) | 643 |
| BtsCI | GGATG | 1 cut(s) | 192 |
| BtsI | GCAGTG | 1 cut(s) | 488 |
| BtsIMutI | CAGTG | 1 cut(s) | 488 |
| Cac8I | GCNNGC | 1 cut(s) | 501 |
| Cfr13I | GGNCC | 2 cut(s) | 318, 437 |
| Csp6I | GTAC | 1 cut(s) | 376 |
| CviAII | CATG | 7 cut(s) | 200, 216, 382, 425, 500, 588, 644 |
| CviJI | RGCY | 4 cut(s) | 124, 149, 220, 248 |
| CviKI_1 | RGCY | 4 cut(s) | 124, 149, 220, 248 |
| CviQI | GTAC | 1 cut(s) | 376 |
| DdeI | CTNAG | 1 cut(s) | 225 |
| DpnI | GATC | 5 cut(s) | 36, 102, 253, 429, 586 |
| DpnII | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| EaeI | YGGCCR | 1 cut(s) | 218 |
| Eam1104I | CTCTTC | 1 cut(s) | 176 |
| EarI | CTCTTC | 1 cut(s) | 176 |
| EciI | GGCGGA | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 1 cut(s) | 643 |
| Eco32I | GATATC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 2 cut(s) | 318, 437 |
| Eco57I | CTGAAG | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 161 |
| EcoRV | GATATC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 643 |
| ErhI | CCWWGG | 1 cut(s) | 643 |
| FaeI | CATG | 7 cut(s) | 203, 219, 385, 428, 503, 591, 647 |
| FaqI | GGGAC | 1 cut(s) | 350 |
| FatI | CATG | 7 cut(s) | 199, 215, 381, 424, 499, 587, 643 |
| FbaI | TGATCA | 1 cut(s) | 427 |
| FokI | GGATG | 1 cut(s) | 199 |
| FspBI | CTAG | 2 cut(s) | 249, 333 |
| HaeIII | GGCC | 1 cut(s) | 220 |
| Hin1II | CATG | 7 cut(s) | 203, 219, 385, 428, 503, 591, 647 |
| HincII | GTYRAC | 2 cut(s) | 351, 556 |
| HindII | GTYRAC | 2 cut(s) | 351, 556 |
| HinfI | GANTC | 6 cut(s) | 134, 232, 366, 407, 604, 639 |
| HpaI | GTTAAC | 2 cut(s) | 351, 556 |
| Hpy166II | GTNNAC | 2 cut(s) | 351, 556 |
| Hpy188I | TCNGA | 2 cut(s) | 304, 460 |
| Hpy8I | GTNNAC | 2 cut(s) | 351, 556 |
| HpyAV | CCTTC | 2 cut(s) | 216, 534 |
| HpyCH4V | TGCA | 5 cut(s) | 53, 86, 489, 503, 656 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 505, 626 |
| HpyF3I | CTNAG | 1 cut(s) | 225 |
| Hsp92II | CATG | 7 cut(s) | 203, 219, 385, 428, 503, 591, 647 |
| Ksp22I | TGATCA | 1 cut(s) | 427 |
| KspAI | GTTAAC | 2 cut(s) | 351, 556 |
| Kzo9I | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| LweI | GCATC | 2 cut(s) | 177, 404 |
| MaeI | CTAG | 2 cut(s) | 249, 333 |
| MaeIII | GTNAC | 1 cut(s) | 445 |
| MalI | GATC | 5 cut(s) | 36, 102, 253, 429, 586 |
| MboI | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| MboII | GAAGA | 3 cut(s) | 193, 473, 483 |
| MfeI | CAATTG | 1 cut(s) | 431 |
| MlsI | TGGCCA | 1 cut(s) | 220 |
| MluCI | AATT | 4 cut(s) | 21, 38, 88, 431 |
| MluNI | TGGCCA | 1 cut(s) | 220 |
| MlyI | GAGTC | 1 cut(s) | 375 |
| MmeI | TCCRAC | 1 cut(s) | 339 |
| MnlI | CCTC | 2 cut(s) | 177, 222 |
| Mox20I | TGGCCA | 1 cut(s) | 220 |
| MscI | TGGCCA | 1 cut(s) | 220 |
| MseI | TTAA | 8 cut(s) | 20, 72, 119, 192, 273, 350, 389, 555 |
| MslI | CAYNNNNRTG | 3 cut(s) | 81, 214, 573 |
| Msp20I | TGGCCA | 1 cut(s) | 220 |
| MspCI | CTTAAG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MunI | CAATTG | 1 cut(s) | 431 |
| Mva1269I | GAATGC | 3 cut(s) | 308, 334, 568 |
| MvaI | CCWGG | 1 cut(s) | 163 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 505, 626 |
| NcoI | CCATGG | 1 cut(s) | 643 |
| NdeII | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| NlaIII | CATG | 7 cut(s) | 203, 219, 385, 428, 503, 591, 647 |
| NlaIV | GGNNCC | 1 cut(s) | 438 |
| NmuCI | GTSAC | 1 cut(s) | 445 |
| NspI | RCATGY | 1 cut(s) | 503 |
| OliI | CACNNNNGTG | 1 cut(s) | 573 |
| PaeI | GCATGC | 1 cut(s) | 503 |
| PctI | GAATGC | 3 cut(s) | 308, 334, 568 |
| PfeI | GAWTC | 5 cut(s) | 134, 232, 407, 604, 639 |
| PleI | GAGTC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 374 |
| PshBI | ATTAAT | 1 cut(s) | 389 |
| Psp6I | CCWGG | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 1 cut(s) | 438 |
| PspPI | GGNCC | 2 cut(s) | 318, 437 |
| PstI | CTGCAG | 1 cut(s) | 658 |
| RsaI | GTAC | 1 cut(s) | 377 |
| RsaNI | GTAC | 1 cut(s) | 376 |
| RseI | CAYNNNNRTG | 3 cut(s) | 81, 214, 573 |
| SaqAI | TTAA | 8 cut(s) | 20, 72, 119, 192, 273, 350, 389, 555 |
| Sau3AI | GATC | 5 cut(s) | 34, 100, 251, 427, 584 |
| Sau96I | GGNCC | 2 cut(s) | 318, 437 |
| SchI | GAGTC | 1 cut(s) | 375 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SetI | ASST | 6 cut(s) | 126, 151, 208, 300, 320, 346 |
| SfaNI | GCATC | 2 cut(s) | 177, 404 |
| SfcI | CTRYAG | 2 cut(s) | 411, 654 |
| SinI | GGWCC | 2 cut(s) | 318, 437 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 81, 214, 573 |
| SmlI | CTYRAG | 1 cut(s) | 71 |
| SmoI | CTYRAG | 1 cut(s) | 71 |
| SphI | GCATGC | 1 cut(s) | 503 |
| Sse9I | AATT | 4 cut(s) | 21, 38, 88, 431 |
| SsiI | CCGC | 2 cut(s) | 266, 627 |
| SspMI | CTAG | 2 cut(s) | 249, 333 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| StyI | CCWWGG | 1 cut(s) | 643 |
| TasI | AATT | 4 cut(s) | 21, 38, 88, 431 |
| TatI | WGTACW | 1 cut(s) | 375 |
| TfiI | GAWTC | 5 cut(s) | 134, 232, 407, 604, 639 |
| Tru1I | TTAA | 8 cut(s) | 20, 72, 119, 192, 273, 350, 389, 555 |
| Tru9I | TTAA | 8 cut(s) | 20, 72, 119, 192, 273, 350, 389, 555 |
| TscAI | CASTG | 1 cut(s) | 488 |
| TseFI | GTSAC | 1 cut(s) | 445 |
| Tsp45I | GTSAC | 1 cut(s) | 445 |
| TspDTI | ATGAA | 2 cut(s) | 194, 216 |
| TspRI | CASTG | 1 cut(s) | 488 |
| Vha464I | CTTAAG | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 2 cut(s) | 318, 437 |
| VspI | ATTAAT | 1 cut(s) | 389 |
| XapI | RAATTY | 1 cut(s) | 88 |
| XceI | RCATGY | 1 cut(s) | 503 |
| XspI | CTAG | 2 cut(s) | 249, 333 |