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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 446 |
| AarI | CACCTGC | 1 cut(s) | 694 |
| Acc36I | ACCTGC | 1 cut(s) | 694 |
| AccB1I | GGYRCC | 3 cut(s) | 109, 238, 682 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 632, 749 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AcsI | RAATTY | 1 cut(s) | 448 |
| AcuI | CTGAAG | 2 cut(s) | 243, 585 |
| AdeI | CACNNNGTG | 1 cut(s) | 695 |
| AfaI | GTAC | 4 cut(s) | 47, 185, 920, 959 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 256, 605, 632, 749 |
| AflII | CTTAAG | 1 cut(s) | 161 |
| AgsI | TTSAA | 9 cut(s) | 76, 271, 366, 524, 556, 580, 593, 647, 722 |
| AjnI | CCWGG | 1 cut(s) | 32 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 732, 764 |
| AluBI | AGCT | 5 cut(s) | 227, 437, 518, 725, 883 |
| AluI | AGCT | 5 cut(s) | 227, 437, 518, 725, 883 |
| Alw26I | GTCTC | 1 cut(s) | 892 |
| AlwI | GGATC | 1 cut(s) | 45 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| AoxI | GGCC | 4 cut(s) | 431, 635, 658, 752 |
| ApeKI | GCWGC | 4 cut(s) | 725, 860, 910, 939 |
| ApoI | RAATTY | 1 cut(s) | 448 |
| AspS9I | GGNCC | 3 cut(s) | 431, 635, 752 |
| AsuHPI | GGTGA | 2 cut(s) | 289, 296 |
| BanI | GGYRCC | 3 cut(s) | 109, 238, 682 |
| BauI | CACGAG | 1 cut(s) | 192 |
| BbvI | GCAGC | 4 cut(s) | 712, 872, 922, 951 |
| BccI | CCATC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 1 cut(s) | 34 |
| BcoDI | GTCTC | 1 cut(s) | 892 |
| BfaI | CTAG | 3 cut(s) | 168, 756, 849 |
| BfrI | CTTAAG | 1 cut(s) | 161 |
| BfuAI | ACCTGC | 1 cut(s) | 694 |
| BglII | AGATCT | 1 cut(s) | 560 |
| BisI | GCNGC | 4 cut(s) | 726, 861, 911, 940 |
| BlsI | GCNGC | 4 cut(s) | 727, 862, 912, 941 |
| Bme1390I | CCNGG | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 3 cut(s) | 431, 635, 752 |
| BmiI | GGNNCC | 3 cut(s) | 111, 240, 684 |
| BmrFI | CCNGG | 1 cut(s) | 34 |
| BmsI | GCATC | 5 cut(s) | 115, 121, 548, 593, 835 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 862, 894 |
| BpmI | CTGGAG | 1 cut(s) | 498 |
| BpuEI | CTTGAG | 1 cut(s) | 869 |
| BsaJI | CCNNGG | 3 cut(s) | 33, 83, 914 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 399, 429 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 256, 605, 632, 749 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| Bse3DI | GCAATG | 1 cut(s) | 103 |
| BseBI | CCWGG | 1 cut(s) | 34 |
| BseDI | CCNNGG | 3 cut(s) | 33, 83, 914 |
| BseGI | GGATG | 2 cut(s) | 478, 850 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 256, 605, 632, 749 |
| BseMI | GCAATG | 1 cut(s) | 103 |
| BseMII | CTCAG | 2 cut(s) | 534, 893 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 3 cut(s) | 217, 220, 560 |
| BseXI | GCAGC | 4 cut(s) | 712, 872, 922, 951 |
| BsgI | GTGCAG | 3 cut(s) | 408, 509, 672 |
| BshFI | GGCC | 4 cut(s) | 433, 637, 660, 754 |
| BshNI | GGYRCC | 3 cut(s) | 109, 238, 682 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 256, 605, 632, 749 |
| BsmAI | GTCTC | 1 cut(s) | 892 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsnI | GGCC | 4 cut(s) | 433, 637, 660, 754 |
| Bsp1407I | TGTACA | 1 cut(s) | 183 |
| Bsp143I | GATC | 3 cut(s) | 37, 560, 875 |
| BspANI | GGCC | 4 cut(s) | 433, 637, 660, 754 |
| BspCNI | CTCAG | 2 cut(s) | 535, 892 |
| BspLI | GGNNCC | 3 cut(s) | 111, 240, 684 |
| BspMI | ACCTGC | 1 cut(s) | 694 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BspQI | GCTCTTC | 1 cut(s) | 588 |
| BspT107I | GGYRCC | 3 cut(s) | 109, 238, 682 |
| BspTI | CTTAAG | 1 cut(s) | 161 |
| BsrDI | GCAATG | 1 cut(s) | 103 |
| BsrGI | TGTACA | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 3 cut(s) | 33, 83, 914 |
| BssMI | GATC | 3 cut(s) | 37, 560, 875 |
| BssSI | CACGAG | 1 cut(s) | 192 |
| BssT1I | CCWWGG | 2 cut(s) | 83, 914 |
| Bst2BI | CACGAG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 2 cut(s) | 643, 962 |
| Bst6I | CTCTTC | 8 cut(s) | 282, 551, 564, 588, 642, 701, 818, 863 |
| BstAFI | CTTAAG | 1 cut(s) | 161 |
| BstAUI | TGTACA | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 2 cut(s) | 435, 658 |
| BstDEI | CTNAG | 2 cut(s) | 543, 879 |
| BstF5I | GGATG | 2 cut(s) | 478, 850 |
| BstKTI | GATC | 3 cut(s) | 40, 563, 878 |
| BstMAI | GTCTC | 1 cut(s) | 892 |
| BstMBI | GATC | 3 cut(s) | 37, 560, 875 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 536, 581 |
| BstNI | CCWGG | 1 cut(s) | 34 |
| BstSCI | CCNGG | 1 cut(s) | 32 |
| BstV1I | GCAGC | 4 cut(s) | 712, 872, 922, 951 |
| BstX2I | RGATCY | 2 cut(s) | 37, 560 |
| BstYI | RGATCY | 2 cut(s) | 37, 560 |
| BsuRI | GGCC | 4 cut(s) | 433, 637, 660, 754 |
| BtsCI | GGATG | 2 cut(s) | 478, 850 |
| BtsIMutI | CAGTG | 1 cut(s) | 184 |
| BveI | ACCTGC | 1 cut(s) | 694 |
| Cac8I | GCNNGC | 2 cut(s) | 435, 658 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 3 cut(s) | 431, 635, 752 |
| Csp6I | GTAC | 4 cut(s) | 46, 184, 919, 958 |
| CviAII | CATG | 3 cut(s) | 308, 404, 422 |
| CviQI | GTAC | 4 cut(s) | 46, 184, 919, 958 |
| DdeI | CTNAG | 2 cut(s) | 543, 879 |
| DpnI | GATC | 3 cut(s) | 39, 562, 877 |
| DpnII | GATC | 3 cut(s) | 37, 560, 875 |
| DraIII | CACNNNGTG | 1 cut(s) | 695 |
| Eam1104I | CTCTTC | 8 cut(s) | 282, 551, 564, 588, 642, 701, 818, 863 |
| EarI | CTCTTC | 8 cut(s) | 282, 551, 564, 588, 642, 701, 818, 863 |
| Eco130I | CCWWGG | 2 cut(s) | 83, 914 |
| Eco57I | CTGAAG | 2 cut(s) | 243, 585 |
| EcoRII | CCWGG | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 2 cut(s) | 83, 914 |
| ErhI | CCWWGG | 2 cut(s) | 83, 914 |
| FaeI | CATG | 3 cut(s) | 311, 407, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 76, 108 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FatI | CATG | 3 cut(s) | 307, 403, 421 |
| Fnu4HI | GCNGC | 4 cut(s) | 726, 861, 911, 940 |
| FokI | GGATG | 2 cut(s) | 485, 857 |
| Fsp4HI | GCNGC | 4 cut(s) | 726, 861, 911, 940 |
| FspBI | CTAG | 3 cut(s) | 168, 756, 849 |
| GluI | GCNGC | 4 cut(s) | 726, 861, 911, 940 |
| GsuI | CTGGAG | 1 cut(s) | 498 |
| HaeIII | GGCC | 4 cut(s) | 433, 637, 660, 754 |
| Hin1II | CATG | 3 cut(s) | 311, 407, 425 |
| HinfI | GANTC | 6 cut(s) | 79, 154, 262, 328, 455, 871 |
| HphI | GGTGA | 2 cut(s) | 289, 296 |
| Hpy166II | GTNNAC | 1 cut(s) | 184 |
| Hpy188I | TCNGA | 3 cut(s) | 460, 544, 565 |
| Hpy188III | TCNNGA | 4 cut(s) | 22, 76, 524, 812 |
| Hpy8I | GTNNAC | 1 cut(s) | 184 |
| HpyAV | CCTTC | 5 cut(s) | 419, 495, 574, 835, 928 |
| HpyCH4III | ACNGT | 2 cut(s) | 643, 962 |
| HpyCH4V | TGCA | 8 cut(s) | 96, 128, 389, 401, 490, 611, 656, 689 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 536, 581 |
| HpyF3I | CTNAG | 2 cut(s) | 543, 879 |
| Hsp92II | CATG | 3 cut(s) | 311, 407, 425 |
| Kzo9I | GATC | 3 cut(s) | 37, 560, 875 |
| LguI | GCTCTTC | 1 cut(s) | 588 |
| LmnI | GCTCC | 2 cut(s) | 304, 517 |
| Lsp1109I | GCAGC | 4 cut(s) | 712, 872, 922, 951 |
| LweI | GCATC | 5 cut(s) | 115, 121, 548, 593, 835 |
| MaeI | CTAG | 3 cut(s) | 168, 756, 849 |
| MaeIII | GTNAC | 1 cut(s) | 277 |
| MalI | GATC | 3 cut(s) | 39, 562, 877 |
| MboI | GATC | 3 cut(s) | 37, 560, 875 |
| MfeI | CAATTG | 1 cut(s) | 243 |
| MflI | RGATCY | 2 cut(s) | 37, 560 |
| MluCI | AATT | 3 cut(s) | 149, 243, 448 |
| MlyI | GAGTC | 2 cut(s) | 337, 880 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MseI | TTAA | 5 cut(s) | 147, 162, 335, 396, 699 |
| MspA1I | CMGCKG | 2 cut(s) | 437, 518 |
| MspCI | CTTAAG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 34 |
| MunI | CAATTG | 1 cut(s) | 243 |
| MvaI | CCWGG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 536, 581 |
| NdeII | GATC | 3 cut(s) | 37, 560, 875 |
| NlaIII | CATG | 3 cut(s) | 311, 407, 425 |
| NlaIV | GGNNCC | 3 cut(s) | 111, 240, 684 |
| NmuCI | GTSAC | 1 cut(s) | 277 |
| PaqCI | CACCTGC | 1 cut(s) | 694 |
| PciSI | GCTCTTC | 1 cut(s) | 588 |
| PfeI | GAWTC | 4 cut(s) | 79, 154, 262, 455 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 632, 749 |
| PkrI | GCNGC | 4 cut(s) | 727, 862, 912, 941 |
| PleI | GAGTC | 2 cut(s) | 336, 879 |
| PpsI | GAGTC | 2 cut(s) | 336, 879 |
| PsiI | TTATAA | 1 cut(s) | 446 |
| Psp6I | CCWGG | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 3 cut(s) | 111, 240, 684 |
| PspPI | GGNCC | 3 cut(s) | 431, 635, 752 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PsuI | RGATCY | 2 cut(s) | 37, 560 |
| PvuII | CAGCTG | 2 cut(s) | 437, 518 |
| RsaI | GTAC | 4 cut(s) | 47, 185, 920, 959 |
| RsaNI | GTAC | 4 cut(s) | 46, 184, 919, 958 |
| SapI | GCTCTTC | 1 cut(s) | 588 |
| SaqAI | TTAA | 5 cut(s) | 147, 162, 335, 396, 699 |
| SatI | GCNGC | 4 cut(s) | 726, 861, 911, 940 |
| Sau3AI | GATC | 3 cut(s) | 37, 560, 875 |
| Sau96I | GGNCC | 3 cut(s) | 431, 635, 752 |
| SchI | GAGTC | 2 cut(s) | 337, 880 |
| ScrFI | CCNGG | 1 cut(s) | 34 |
| SetI | ASST | 9 cut(s) | 229, 279, 439, 520, 654, 688, 727, 885, 920 |
| SfaNI | GCATC | 5 cut(s) | 115, 121, 548, 593, 835 |
| SmlI | CTYRAG | 2 cut(s) | 161, 884 |
| SmoI | CTYRAG | 2 cut(s) | 161, 884 |
| Sse9I | AATT | 3 cut(s) | 149, 243, 448 |
| SspMI | CTAG | 3 cut(s) | 168, 756, 849 |
| StyD4I | CCNGG | 1 cut(s) | 32 |
| StyI | CCWWGG | 2 cut(s) | 83, 914 |
| TaaI | ACNGT | 2 cut(s) | 643, 962 |
| TaqI | TCGA | 1 cut(s) | 874 |
| TasI | AATT | 3 cut(s) | 149, 243, 448 |
| TatI | WGTACW | 2 cut(s) | 183, 957 |
| TfiI | GAWTC | 4 cut(s) | 79, 154, 262, 455 |
| Tru1I | TTAA | 5 cut(s) | 147, 162, 335, 396, 699 |
| Tru9I | TTAA | 5 cut(s) | 147, 162, 335, 396, 699 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 1 cut(s) | 277 |
| TseI | GCWGC | 4 cut(s) | 725, 860, 910, 939 |
| Tsp45I | GTSAC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 4 cut(s) | 54, 324, 438, 753 |
| TspGWI | ACGGA | 1 cut(s) | 29 |
| TspRI | CASTG | 1 cut(s) | 184 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 632, 749 |
| Vha464I | CTTAAG | 1 cut(s) | 161 |
| XapI | RAATTY | 1 cut(s) | 448 |
| XspI | CTAG | 3 cut(s) | 168, 756, 849 |