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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 623 |
| AccB1I | GGYRCC | 1 cut(s) | 623 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 251 |
| AclWI | GGATC | 2 cut(s) | 705, 863 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AfaI | GTAC | 2 cut(s) | 625, 730 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 251, 454, 746 |
| AgsI | TTSAA | 7 cut(s) | 74, 265, 325, 371, 578, 618, 771 |
| AjnI | CCWGG | 1 cut(s) | 250 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 751, 783 |
| AluBI | AGCT | 9 cut(s) | 278, 431, 601, 662, 680, 734, 788, 806, 824 |
| AluI | AGCT | 9 cut(s) | 278, 431, 601, 662, 680, 734, 788, 806, 824 |
| Alw21I | GWGCWC | 1 cut(s) | 525 |
| AlwI | GGATC | 2 cut(s) | 705, 863 |
| AoxI | GGCC | 2 cut(s) | 242, 752 |
| ApeKI | GCWGC | 3 cut(s) | 6, 734, 785 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 53, 85, 176, 208 |
| AseI | ATTAAT | 1 cut(s) | 288 |
| Asp718I | GGTACC | 1 cut(s) | 623 |
| AspS9I | GGNCC | 1 cut(s) | 88 |
| AsuHPI | GGTGA | 1 cut(s) | 43 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 623 |
| Bbv12I | GWGCWC | 1 cut(s) | 525 |
| BbvI | GCAGC | 2 cut(s) | 721, 797 |
| BccI | CCATC | 2 cut(s) | 253, 353 |
| BciT130I | CCWGG | 1 cut(s) | 252 |
| BclI | TGATCA | 3 cut(s) | 46, 460, 594 |
| BfaI | CTAG | 1 cut(s) | 741 |
| BisI | GCNGC | 3 cut(s) | 7, 735, 786 |
| BlsI | GCNGC | 3 cut(s) | 8, 736, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 252 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 1 cut(s) | 88 |
| BmiI | GGNNCC | 1 cut(s) | 625 |
| BmrFI | CCNGG | 1 cut(s) | 252 |
| BmsI | GCATC | 1 cut(s) | 676 |
| Bpu10I | CCTNAGC | 1 cut(s) | 663 |
| BpuEI | CTTGAG | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 2 cut(s) | 250, 453 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 77, 107, 721, 751 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 251, 454, 746 |
| Bse1I | ACTGG | 1 cut(s) | 552 |
| BseBI | CCWGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 2 cut(s) | 250, 453 |
| BseGI | GGATG | 3 cut(s) | 245, 424, 463 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 251, 454, 746 |
| BseMII | CTCAG | 2 cut(s) | 405, 441 |
| BseNI | ACTGG | 1 cut(s) | 552 |
| BseRI | GAGGAG | 2 cut(s) | 176, 236 |
| BseXI | GCAGC | 2 cut(s) | 721, 797 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| BsgI | GTGCAG | 1 cut(s) | 798 |
| BshFI | GGCC | 2 cut(s) | 244, 754 |
| BshNI | GGYRCC | 1 cut(s) | 623 |
| BsiHKAI | GWGCWC | 1 cut(s) | 525 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 251, 454, 746 |
| BsnI | GGCC | 2 cut(s) | 244, 754 |
| Bsp1286I | GDGCHC | 1 cut(s) | 525 |
| Bsp143I | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| BspANI | GGCC | 2 cut(s) | 244, 754 |
| BspCNI | CTCAG | 2 cut(s) | 406, 440 |
| BspHI | TCATGA | 2 cut(s) | 463, 484 |
| BspLI | GGNNCC | 1 cut(s) | 625 |
| BspPI | GGATC | 2 cut(s) | 705, 863 |
| BspT107I | GGYRCC | 1 cut(s) | 623 |
| BsrI | ACTGG | 1 cut(s) | 552 |
| BssECI | CCNNGG | 2 cut(s) | 250, 453 |
| BssMI | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 1 cut(s) | 252 |
| Bst6I | CTCTTC | 1 cut(s) | 213 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 1 cut(s) | 521 |
| BstDEI | CTNAG | 6 cut(s) | 10, 52, 414, 427, 656, 663 |
| BstF5I | GGATG | 3 cut(s) | 245, 424, 463 |
| BstKTI | GATC | 6 cut(s) | 36, 49, 463, 597, 700, 858 |
| BstMBI | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 275, 686, 812, 821, 875 |
| BstNI | CCWGG | 1 cut(s) | 252 |
| BstSCI | CCNGG | 1 cut(s) | 250 |
| BstV1I | GCAGC | 2 cut(s) | 721, 797 |
| BsuRI | GGCC | 2 cut(s) | 244, 754 |
| BtsCI | GGATG | 3 cut(s) | 245, 424, 463 |
| BtsIMutI | CAGTG | 2 cut(s) | 559, 855 |
| Cac8I | GCNNGC | 1 cut(s) | 521 |
| CciI | TCATGA | 2 cut(s) | 463, 484 |
| Cfr13I | GGNCC | 1 cut(s) | 88 |
| Csp6I | GTAC | 2 cut(s) | 624, 729 |
| CviAII | CATG | 4 cut(s) | 464, 485, 496, 542 |
| CviQI | GTAC | 2 cut(s) | 624, 729 |
| DdeI | CTNAG | 6 cut(s) | 10, 52, 414, 427, 656, 663 |
| DpnI | GATC | 6 cut(s) | 35, 48, 462, 596, 699, 857 |
| DpnII | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| Eam1104I | CTCTTC | 1 cut(s) | 213 |
| EarI | CTCTTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| EcoO109I | RGGNCCY | 1 cut(s) | 88 |
| EcoRII | CCWGG | 1 cut(s) | 250 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 4 cut(s) | 467, 488, 499, 545 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 751, 783 |
| FatI | CATG | 4 cut(s) | 463, 484, 495, 541 |
| FauNDI | CATATG | 1 cut(s) | 529 |
| FbaI | TGATCA | 3 cut(s) | 46, 460, 594 |
| Fnu4HI | GCNGC | 3 cut(s) | 7, 735, 786 |
| FokI | GGATG | 3 cut(s) | 232, 431, 470 |
| Fsp4HI | GCNGC | 3 cut(s) | 7, 735, 786 |
| FspBI | CTAG | 1 cut(s) | 741 |
| GluI | GCNGC | 3 cut(s) | 7, 735, 786 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| HaeIII | GGCC | 2 cut(s) | 244, 754 |
| Hin1II | CATG | 4 cut(s) | 467, 488, 499, 545 |
| HindIII | AAGCTT | 1 cut(s) | 822 |
| HinfI | GANTC | 4 cut(s) | 130, 261, 329, 425 |
| HphI | GGTGA | 1 cut(s) | 43 |
| Hpy188I | TCNGA | 3 cut(s) | 334, 415, 560 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 202, 371, 464, 485 |
| HpyAV | CCTTC | 5 cut(s) | 307, 377, 700, 744, 819 |
| HpyCH4V | TGCA | 6 cut(s) | 499, 533, 541, 689, 815, 869 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 275, 686, 812, 821, 875 |
| HpyF3I | CTNAG | 6 cut(s) | 10, 52, 414, 427, 656, 663 |
| Hsp92II | CATG | 4 cut(s) | 467, 488, 499, 545 |
| KpnI | GGTACC | 1 cut(s) | 627 |
| Ksp22I | TGATCA | 3 cut(s) | 46, 460, 594 |
| Kzo9I | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| LmnI | GCTCC | 4 cut(s) | 283, 386, 742, 811 |
| Lsp1109I | GCAGC | 2 cut(s) | 721, 797 |
| LweI | GCATC | 1 cut(s) | 676 |
| MaeI | CTAG | 1 cut(s) | 741 |
| MalI | GATC | 6 cut(s) | 35, 48, 462, 596, 699, 857 |
| MboI | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| MboII | GAAGA | 6 cut(s) | 86, 230, 322, 365, 392, 695 |
| MhlI | GDGCHC | 1 cut(s) | 525 |
| MluCI | AATT | 2 cut(s) | 67, 883 |
| MlyI | GAGTC | 2 cut(s) | 139, 419 |
| MseI | TTAA | 1 cut(s) | 288 |
| MslI | CAYNNNNRTG | 3 cut(s) | 468, 528, 546 |
| MspA1I | CMGCKG | 2 cut(s) | 431, 734 |
| MspR9I | CCNGG | 1 cut(s) | 252 |
| MvaI | CCWGG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 275, 686, 812, 821, 875 |
| NdeI | CATATG | 1 cut(s) | 529 |
| NdeII | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| NlaIII | CATG | 4 cut(s) | 467, 488, 499, 545 |
| NlaIV | GGNNCC | 1 cut(s) | 625 |
| PagI | TCATGA | 2 cut(s) | 463, 484 |
| PfeI | GAWTC | 2 cut(s) | 261, 329 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 251 |
| PkrI | GCNGC | 3 cut(s) | 8, 736, 787 |
| PleI | GAGTC | 2 cut(s) | 138, 419 |
| PpsI | GAGTC | 2 cut(s) | 138, 419 |
| PpuMI | RGGWCCY | 1 cut(s) | 88 |
| PshBI | ATTAAT | 1 cut(s) | 288 |
| Psp5II | RGGWCCY | 1 cut(s) | 88 |
| Psp6I | CCWGG | 1 cut(s) | 250 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 1 cut(s) | 625 |
| PspPI | GGNCC | 1 cut(s) | 88 |
| PspPPI | RGGWCCY | 1 cut(s) | 88 |
| PvuII | CAGCTG | 2 cut(s) | 431, 734 |
| RsaI | GTAC | 2 cut(s) | 625, 730 |
| RsaNI | GTAC | 2 cut(s) | 624, 729 |
| RseI | CAYNNNNRTG | 3 cut(s) | 468, 528, 546 |
| SaqAI | TTAA | 1 cut(s) | 288 |
| SatI | GCNGC | 3 cut(s) | 7, 735, 786 |
| Sau3AI | GATC | 6 cut(s) | 33, 46, 460, 594, 697, 855 |
| Sau96I | GGNCC | 1 cut(s) | 88 |
| SchI | GAGTC | 2 cut(s) | 139, 419 |
| ScrFI | CCNGG | 1 cut(s) | 252 |
| SduI | GDGCHC | 1 cut(s) | 525 |
| SfaNI | GCATC | 1 cut(s) | 676 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 468, 528, 546 |
| SmlI | CTYRAG | 1 cut(s) | 273 |
| SmoI | CTYRAG | 1 cut(s) | 273 |
| Sse9I | AATT | 2 cut(s) | 67, 883 |
| SspMI | CTAG | 1 cut(s) | 741 |
| StyD4I | CCNGG | 1 cut(s) | 250 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TasI | AATT | 2 cut(s) | 67, 883 |
| TfiI | GAWTC | 2 cut(s) | 261, 329 |
| Tru1I | TTAA | 1 cut(s) | 288 |
| Tru9I | TTAA | 1 cut(s) | 288 |
| TscAI | CASTG | 2 cut(s) | 559, 855 |
| TseI | GCWGC | 3 cut(s) | 6, 734, 785 |
| TspDTI | ATGAA | 6 cut(s) | 132, 342, 360, 480, 558, 666 |
| TspRI | CASTG | 2 cut(s) | 559, 855 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| VspI | ATTAAT | 1 cut(s) | 288 |
| XspI | CTAG | 1 cut(s) | 741 |