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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AclWI | GGATC | 1 cut(s) | 839 |
| AcoI | YGGCCR | 1 cut(s) | 935 |
| AcsI | RAATTY | 3 cut(s) | 169, 419, 740 |
| AfaI | GTAC | 3 cut(s) | 35, 66, 535 |
| AflIII | ACRYGT | 1 cut(s) | 553 |
| AgsI | TTSAA | 3 cut(s) | 62, 314, 425 |
| Alw26I | GTCTC | 1 cut(s) | 665 |
| AlwI | GGATC | 1 cut(s) | 839 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 1 cut(s) | 935 |
| ApeKI | GCWGC | 4 cut(s) | 851, 963, 984, 1005 |
| ApoI | RAATTY | 3 cut(s) | 169, 419, 740 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 36, 68 |
| AspS9I | GGNCC | 1 cut(s) | 392 |
| AsuHPI | GGTGA | 9 cut(s) | 46, 536, 581, 906, 948, 969, 990, 1011, 1032 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| AvaII | GGWCC | 1 cut(s) | 392 |
| AxyI | CCTNAGG | 1 cut(s) | 588 |
| BalI | TGGCCA | 1 cut(s) | 937 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BbsI | GAAGAC | 1 cut(s) | 738 |
| BbvI | GCAGC | 4 cut(s) | 838, 975, 996, 1017 |
| BccI | CCATC | 6 cut(s) | 644, 959, 980, 1001, 1022, 1043 |
| BciVI | GTATCC | 1 cut(s) | 228 |
| BcoDI | GTCTC | 1 cut(s) | 665 |
| BfaI | CTAG | 1 cut(s) | 306 |
| BfmI | CTRYAG | 2 cut(s) | 369, 852 |
| BfuI | GTATCC | 1 cut(s) | 228 |
| BisI | GCNGC | 4 cut(s) | 852, 964, 985, 1006 |
| BlpI | GCTNAGC | 1 cut(s) | 967 |
| BlsI | GCNGC | 4 cut(s) | 853, 965, 986, 1007 |
| Bme18I | GGWCC | 1 cut(s) | 392 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 1 cut(s) | 392 |
| BmiI | GGNNCC | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 217 |
| BoxI | GACNNNNGTC | 1 cut(s) | 150 |
| BpiI | GAAGAC | 1 cut(s) | 738 |
| BpmI | CTGGAG | 2 cut(s) | 809, 819 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 967 |
| BsaBI | GATNNNNATC | 1 cut(s) | 843 |
| Bse1I | ACTGG | 1 cut(s) | 152 |
| Bse21I | CCTNAGG | 1 cut(s) | 588 |
| Bse3DI | GCAATG | 1 cut(s) | 498 |
| Bse8I | GATNNNNATC | 1 cut(s) | 843 |
| BseGI | GGATG | 8 cut(s) | 367, 463, 472, 481, 490, 625, 673, 802 |
| BseJI | GATNNNNATC | 1 cut(s) | 843 |
| BseMI | GCAATG | 1 cut(s) | 498 |
| BseMII | CTCAG | 2 cut(s) | 579, 981 |
| BseNI | ACTGG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 3 cut(s) | 476, 503, 527 |
| BseXI | GCAGC | 4 cut(s) | 838, 975, 996, 1017 |
| BsgI | GTGCAG | 1 cut(s) | 741 |
| BshFI | GGCC | 1 cut(s) | 937 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsmAI | GTCTC | 1 cut(s) | 665 |
| BsnI | GGCC | 1 cut(s) | 937 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 844 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 967 |
| BspANI | GGCC | 1 cut(s) | 937 |
| BspCNI | CTCAG | 2 cut(s) | 580, 980 |
| BspHI | TCATGA | 3 cut(s) | 211, 541, 601 |
| BspLI | GGNNCC | 1 cut(s) | 300 |
| BspMAI | CTGCAG | 2 cut(s) | 373, 856 |
| BspPI | GGATC | 1 cut(s) | 839 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 498 |
| BsrI | ACTGG | 1 cut(s) | 152 |
| BssMI | GATC | 1 cut(s) | 844 |
| Bst4CI | ACNGT | 5 cut(s) | 538, 598, 616, 643, 728 |
| Bst6I | CTCTTC | 3 cut(s) | 447, 474, 678 |
| BstC8I | GCNNGC | 1 cut(s) | 785 |
| BstDEI | CTNAG | 4 cut(s) | 588, 928, 967, 1060 |
| BstF5I | GGATG | 8 cut(s) | 367, 463, 472, 481, 490, 625, 673, 802 |
| BstKTI | GATC | 1 cut(s) | 847 |
| BstMAI | GTCTC | 1 cut(s) | 665 |
| BstMBI | GATC | 1 cut(s) | 844 |
| BstNSI | RCATGY | 1 cut(s) | 557 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 150 |
| BstSFI | CTRYAG | 2 cut(s) | 369, 852 |
| BstV1I | GCAGC | 4 cut(s) | 838, 975, 996, 1017 |
| BstV2I | GAAGAC | 1 cut(s) | 738 |
| Bsu36I | CCTNAGG | 1 cut(s) | 588 |
| BsuI | GTATCC | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 937 |
| BtsCI | GGATG | 8 cut(s) | 367, 463, 472, 481, 490, 625, 673, 802 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 2 cut(s) | 378, 733 |
| Cac8I | GCNNGC | 1 cut(s) | 785 |
| CciI | TCATGA | 3 cut(s) | 211, 541, 601 |
| Cfr13I | GGNCC | 1 cut(s) | 392 |
| Csp6I | GTAC | 3 cut(s) | 34, 65, 534 |
| CviAII | CATG | 5 cut(s) | 71, 212, 542, 554, 602 |
| CviQI | GTAC | 3 cut(s) | 34, 65, 534 |
| DdeI | CTNAG | 4 cut(s) | 588, 928, 967, 1060 |
| DpnI | GATC | 1 cut(s) | 846 |
| DpnII | GATC | 1 cut(s) | 844 |
| EaeI | YGGCCR | 1 cut(s) | 935 |
| Eam1104I | CTCTTC | 3 cut(s) | 447, 474, 678 |
| EarI | CTCTTC | 3 cut(s) | 447, 474, 678 |
| Eco47I | GGWCC | 1 cut(s) | 392 |
| Eco81I | CCTNAGG | 1 cut(s) | 588 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoO109I | RGGNCCY | 1 cut(s) | 392 |
| FaeI | CATG | 5 cut(s) | 74, 215, 545, 557, 605 |
| FatI | CATG | 5 cut(s) | 70, 211, 541, 553, 601 |
| Fnu4HI | GCNGC | 4 cut(s) | 852, 964, 985, 1006 |
| FokI | GGATG | 8 cut(s) | 374, 470, 479, 488, 497, 632, 680, 809 |
| Fsp4HI | GCNGC | 4 cut(s) | 852, 964, 985, 1006 |
| FspBI | CTAG | 1 cut(s) | 306 |
| GluI | GCNGC | 4 cut(s) | 852, 964, 985, 1006 |
| GsuI | CTGGAG | 2 cut(s) | 809, 819 |
| HaeIII | GGCC | 1 cut(s) | 937 |
| Hin1II | CATG | 5 cut(s) | 74, 215, 545, 557, 605 |
| HincII | GTYRAC | 1 cut(s) | 823 |
| HindII | GTYRAC | 1 cut(s) | 823 |
| HinfI | GANTC | 1 cut(s) | 365 |
| HphI | GGTGA | 9 cut(s) | 46, 536, 581, 906, 948, 969, 990, 1011, 1032 |
| Hpy166II | GTNNAC | 1 cut(s) | 823 |
| Hpy188III | TCNNGA | 6 cut(s) | 212, 542, 587, 602, 647, 836 |
| Hpy8I | GTNNAC | 1 cut(s) | 823 |
| HpyAV | CCTTC | 5 cut(s) | 524, 569, 629, 787, 854 |
| HpyCH4III | ACNGT | 5 cut(s) | 538, 598, 616, 643, 728 |
| HpyCH4V | TGCA | 6 cut(s) | 194, 371, 401, 498, 722, 854 |
| HpyF3I | CTNAG | 4 cut(s) | 588, 928, 967, 1060 |
| Hsp92II | CATG | 5 cut(s) | 74, 215, 545, 557, 605 |
| Kzo9I | GATC | 1 cut(s) | 844 |
| LmnI | GCTCC | 3 cut(s) | 838, 904, 947 |
| Lsp1109I | GCAGC | 4 cut(s) | 838, 975, 996, 1017 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeI | CTAG | 1 cut(s) | 306 |
| MaeIII | GTNAC | 2 cut(s) | 52, 226 |
| MalI | GATC | 1 cut(s) | 846 |
| MboI | GATC | 1 cut(s) | 844 |
| MboII | GAAGA | 8 cut(s) | 464, 491, 638, 695, 743, 782, 887, 916 |
| MlsI | TGGCCA | 1 cut(s) | 937 |
| MluCI | AATT | 6 cut(s) | 169, 292, 419, 493, 740, 869 |
| MluNI | TGGCCA | 1 cut(s) | 937 |
| Mox20I | TGGCCA | 1 cut(s) | 937 |
| MscI | TGGCCA | 1 cut(s) | 937 |
| MseI | TTAA | 2 cut(s) | 947, 1066 |
| Msp20I | TGGCCA | 1 cut(s) | 937 |
| MspA1I | CMGCKG | 1 cut(s) | 851 |
| NdeII | GATC | 1 cut(s) | 844 |
| NlaIII | CATG | 5 cut(s) | 74, 215, 545, 557, 605 |
| NlaIV | GGNNCC | 1 cut(s) | 300 |
| NmeAIII | GCCGAG | 1 cut(s) | 30 |
| NmuCI | GTSAC | 2 cut(s) | 52, 226 |
| NspI | RCATGY | 1 cut(s) | 557 |
| PagI | TCATGA | 3 cut(s) | 211, 541, 601 |
| PciI | ACATGT | 1 cut(s) | 553 |
| PfeI | GAWTC | 1 cut(s) | 365 |
| PkrI | GCNGC | 4 cut(s) | 853, 965, 986, 1007 |
| PpuMI | RGGWCCY | 1 cut(s) | 392 |
| PscI | ACATGT | 1 cut(s) | 553 |
| PshAI | GACNNNNGTC | 1 cut(s) | 150 |
| Psp5II | RGGWCCY | 1 cut(s) | 392 |
| PspN4I | GGNNCC | 1 cut(s) | 300 |
| PspPI | GGNCC | 1 cut(s) | 392 |
| PspPPI | RGGWCCY | 1 cut(s) | 392 |
| PstI | CTGCAG | 2 cut(s) | 373, 856 |
| PvuII | CAGCTG | 1 cut(s) | 851 |
| RsaI | GTAC | 3 cut(s) | 35, 66, 535 |
| RsaNI | GTAC | 3 cut(s) | 34, 65, 534 |
| SaqAI | TTAA | 2 cut(s) | 947, 1066 |
| SatI | GCNGC | 4 cut(s) | 852, 964, 985, 1006 |
| Sau3AI | GATC | 1 cut(s) | 844 |
| Sau96I | GGNCC | 1 cut(s) | 392 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SfcI | CTRYAG | 2 cut(s) | 369, 852 |
| SinI | GGWCC | 1 cut(s) | 392 |
| Sse9I | AATT | 6 cut(s) | 169, 292, 419, 493, 740, 869 |
| SspMI | CTAG | 1 cut(s) | 306 |
| TaaI | ACNGT | 5 cut(s) | 538, 598, 616, 643, 728 |
| TasI | AATT | 6 cut(s) | 169, 292, 419, 493, 740, 869 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TfiI | GAWTC | 1 cut(s) | 365 |
| Tru1I | TTAA | 2 cut(s) | 947, 1066 |
| Tru9I | TTAA | 2 cut(s) | 947, 1066 |
| TscAI | CASTG | 2 cut(s) | 378, 733 |
| TseFI | GTSAC | 2 cut(s) | 52, 226 |
| TseI | GCWGC | 4 cut(s) | 851, 963, 984, 1005 |
| Tsp45I | GTSAC | 2 cut(s) | 52, 226 |
| TspRI | CASTG | 2 cut(s) | 378, 733 |
| VpaK11BI | GGWCC | 1 cut(s) | 392 |
| XapI | RAATTY | 3 cut(s) | 169, 419, 740 |
| XceI | RCATGY | 1 cut(s) | 557 |
| XspI | CTAG | 1 cut(s) | 306 |