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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 152 |
| AatII | GACGTC | 1 cut(s) | 756 |
| Acc36I | ACCTGC | 1 cut(s) | 712 |
| Acc65I | GGTACC | 2 cut(s) | 1370, 1487 |
| AccB1I | GGYRCC | 2 cut(s) | 1370, 1487 |
| AccI | GTMKAC | 2 cut(s) | 156, 1100 |
| AclWI | GGATC | 5 cut(s) | 134, 686, 893, 1021, 1136 |
| AcsI | RAATTY | 2 cut(s) | 566, 1345 |
| AcuI | CTGAAG | 3 cut(s) | 149, 157, 1019 |
| AcyI | GRCGYC | 1 cut(s) | 753 |
| AfaI | GTAC | 3 cut(s) | 1256, 1372, 1489 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 302, 598, 1202, 1483 |
| AflII | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| AflIII | ACRYGT | 1 cut(s) | 1090 |
| AgsI | TTSAA | 9 cut(s) | 102, 202, 410, 586, 733, 784, 896, 995, 1343 |
| AjnI | CCWGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AleI | CACNNNNGTG | 2 cut(s) | 740, 1354 |
| AluBI | AGCT | 7 cut(s) | 359, 449, 494, 674, 950, 1330, 1552 |
| AluI | AGCT | 7 cut(s) | 359, 449, 494, 674, 950, 1330, 1552 |
| Alw26I | GTCTC | 1 cut(s) | 841 |
| AlwI | GGATC | 5 cut(s) | 134, 686, 893, 1021, 1136 |
| AoxI | GGCC | 3 cut(s) | 18, 600, 1274 |
| ApeKI | GCWGC | 4 cut(s) | 59, 119, 950, 1359 |
| ApoI | RAATTY | 2 cut(s) | 566, 1345 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 701, 733 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1465 |
| Asp718I | GGTACC | 2 cut(s) | 1370, 1487 |
| AspS9I | GGNCC | 3 cut(s) | 589, 600, 717 |
| AsuHPI | GGTGA | 1 cut(s) | 856 |
| AvaII | GGWCC | 2 cut(s) | 589, 717 |
| AxyI | CCTNAGG | 1 cut(s) | 1128 |
| BaeGI | GKGCMC | 2 cut(s) | 727, 1383 |
| BanI | GGYRCC | 2 cut(s) | 1370, 1487 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1017, 1049 |
| BbvI | GCAGC | 4 cut(s) | 46, 106, 937, 1371 |
| BccI | CCATC | 5 cut(s) | 269, 616, 1056, 1112, 1313 |
| BciT130I | CCWGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| BcoDI | GTCTC | 1 cut(s) | 841 |
| BfaI | CTAG | 2 cut(s) | 1221, 1569 |
| BfmI | CTRYAG | 1 cut(s) | 1054 |
| BfrI | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| BfuAI | ACCTGC | 1 cut(s) | 712 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1273 |
| BisI | GCNGC | 4 cut(s) | 60, 120, 951, 1360 |
| BlsI | GCNGC | 4 cut(s) | 61, 121, 952, 1361 |
| Bme1390I | CCNGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| Bme18I | GGWCC | 2 cut(s) | 589, 717 |
| BmgT120I | GGNCC | 3 cut(s) | 589, 600, 717 |
| BmiI | GGNNCC | 4 cut(s) | 666, 1372, 1462, 1489 |
| BmrFI | CCNGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| BmsI | GCATC | 5 cut(s) | 322, 550, 1086, 1225, 1288 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1482 |
| BsaHI | GRCGYC | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 5 cut(s) | 181, 720, 1250, 1374, 1476 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 302, 598, 1202, 1483 |
| Bse118I | RCCGGY | 1 cut(s) | 1195 |
| Bse1I | ACTGG | 5 cut(s) | 438, 592, 815, 976, 1231 |
| Bse21I | CCTNAGG | 1 cut(s) | 1128 |
| Bse3DI | GCAATG | 2 cut(s) | 603, 1237 |
| BseBI | CCWGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| BseDI | CCNNGG | 5 cut(s) | 181, 720, 1250, 1374, 1476 |
| BseGI | GGATG | 5 cut(s) | 280, 402, 1077, 1303, 1519 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 302, 598, 1202, 1483 |
| BseMI | GCAATG | 2 cut(s) | 603, 1237 |
| BseMII | CTCAG | 2 cut(s) | 21, 1119 |
| BseNI | ACTGG | 5 cut(s) | 438, 592, 815, 976, 1231 |
| BseSI | GKGCMC | 2 cut(s) | 727, 1383 |
| BseXI | GCAGC | 4 cut(s) | 46, 106, 937, 1371 |
| BseYI | CCCAGC | 2 cut(s) | 449, 1330 |
| BsgI | GTGCAG | 2 cut(s) | 35, 1378 |
| BshFI | GGCC | 3 cut(s) | 20, 602, 1276 |
| BshNI | GGYRCC | 2 cut(s) | 1370, 1487 |
| BsiSI | CCGG | 1 cut(s) | 1196 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 302, 598, 1202, 1483 |
| BsmAI | GTCTC | 1 cut(s) | 841 |
| BsmI | GAATGC | 1 cut(s) | 963 |
| BsnI | GGCC | 3 cut(s) | 20, 602, 1276 |
| Bsp1286I | GDGCHC | 2 cut(s) | 727, 1383 |
| Bsp143I | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| BspANI | GGCC | 3 cut(s) | 20, 602, 1276 |
| BspCNI | CTCAG | 2 cut(s) | 20, 1120 |
| BspHI | TCATGA | 2 cut(s) | 651, 1113 |
| BspLI | GGNNCC | 4 cut(s) | 666, 1372, 1462, 1489 |
| BspMI | ACCTGC | 1 cut(s) | 712 |
| BspPI | GGATC | 5 cut(s) | 134, 686, 893, 1021, 1136 |
| BspT107I | GGYRCC | 2 cut(s) | 1370, 1487 |
| BspTI | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| BsrDI | GCAATG | 2 cut(s) | 603, 1237 |
| BsrFI | RCCGGY | 1 cut(s) | 1195 |
| BsrI | ACTGG | 5 cut(s) | 438, 592, 815, 976, 1231 |
| BssAI | RCCGGY | 1 cut(s) | 1195 |
| BssECI | CCNNGG | 5 cut(s) | 181, 720, 1250, 1374, 1476 |
| BssMI | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| BssNI | GRCGYC | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 1 cut(s) | 1374 |
| Bst2UI | CCWGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| Bst4CI | ACNGT | 3 cut(s) | 154, 739, 1451 |
| Bst6I | CTCTTC | 3 cut(s) | 125, 851, 1471 |
| BstACI | GRCGYC | 1 cut(s) | 753 |
| BstAFI | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1083 |
| BstC8I | GCNNGC | 5 cut(s) | 18, 229, 492, 801, 1274 |
| BstDEI | CTNAG | 7 cut(s) | 7, 698, 1128, 1293, 1326, 1352, 1482 |
| BstF5I | GGATG | 5 cut(s) | 280, 402, 1077, 1303, 1519 |
| BstKTI | GATC | 6 cut(s) | 142, 523, 694, 901, 1016, 1144 |
| BstMAI | GTCTC | 1 cut(s) | 841 |
| BstMBI | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1083, 1273 |
| BstNI | CCWGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| BstNSI | RCATGY | 2 cut(s) | 231, 1094 |
| BstSCI | CCNGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| BstSFI | CTRYAG | 1 cut(s) | 1054 |
| BstSLI | GKGCMC | 2 cut(s) | 727, 1383 |
| BstV1I | GCAGC | 4 cut(s) | 46, 106, 937, 1371 |
| BstX2I | RGATCY | 3 cut(s) | 691, 898, 1013 |
| BstYI | RGATCY | 3 cut(s) | 691, 898, 1013 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1128 |
| BsuRI | GGCC | 3 cut(s) | 20, 602, 1276 |
| BtsCI | GGATG | 5 cut(s) | 280, 402, 1077, 1303, 1519 |
| BtsIMutI | CAGTG | 4 cut(s) | 194, 735, 822, 1456 |
| BveI | ACCTGC | 1 cut(s) | 712 |
| Cac8I | GCNNGC | 5 cut(s) | 18, 229, 492, 801, 1274 |
| CciI | TCATGA | 2 cut(s) | 651, 1113 |
| Cfr10I | RCCGGY | 1 cut(s) | 1195 |
| Cfr13I | GGNCC | 3 cut(s) | 589, 600, 717 |
| Csp6I | GTAC | 3 cut(s) | 1255, 1371, 1488 |
| CviAII | CATG | 5 cut(s) | 228, 652, 1091, 1114, 1168 |
| CviQI | GTAC | 3 cut(s) | 1255, 1371, 1488 |
| DdeI | CTNAG | 7 cut(s) | 7, 698, 1128, 1293, 1326, 1352, 1482 |
| DpnI | GATC | 6 cut(s) | 141, 522, 693, 900, 1015, 1143 |
| DpnII | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 152 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 152 |
| Eam1104I | CTCTTC | 3 cut(s) | 125, 851, 1471 |
| EarI | CTCTTC | 3 cut(s) | 125, 851, 1471 |
| Eco130I | CCWWGG | 1 cut(s) | 1374 |
| Eco47I | GGWCC | 2 cut(s) | 589, 717 |
| Eco57I | CTGAAG | 3 cut(s) | 149, 157, 1019 |
| Eco81I | CCTNAGG | 1 cut(s) | 1128 |
| EcoRII | CCWGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| EcoT14I | CCWWGG | 1 cut(s) | 1374 |
| EcoT22I | ATGCAT | 2 cut(s) | 790, 1303 |
| ErhI | CCWWGG | 1 cut(s) | 1374 |
| FaeI | CATG | 5 cut(s) | 231, 655, 1094, 1117, 1171 |
| FatI | CATG | 5 cut(s) | 227, 651, 1090, 1113, 1167 |
| FauNDI | CATATG | 2 cut(s) | 298, 514 |
| FblI | GTMKAC | 2 cut(s) | 156, 1100 |
| Fnu4HI | GCNGC | 4 cut(s) | 60, 120, 951, 1360 |
| FokI | GGATG | 5 cut(s) | 287, 409, 1064, 1310, 1526 |
| Fsp4HI | GCNGC | 4 cut(s) | 60, 120, 951, 1360 |
| FspBI | CTAG | 2 cut(s) | 1221, 1569 |
| GluI | GCNGC | 4 cut(s) | 60, 120, 951, 1360 |
| GsaI | CCCAGC | 2 cut(s) | 453, 1334 |
| HaeIII | GGCC | 3 cut(s) | 20, 602, 1276 |
| HapII | CCGG | 1 cut(s) | 1196 |
| Hin1I | GRCGYC | 1 cut(s) | 753 |
| Hin1II | CATG | 5 cut(s) | 231, 655, 1094, 1117, 1171 |
| HincII | GTYRAC | 2 cut(s) | 157, 615 |
| HindII | GTYRAC | 2 cut(s) | 157, 615 |
| HindIII | AAGCTT | 1 cut(s) | 1550 |
| HinfI | GANTC | 5 cut(s) | 292, 504, 655, 892, 1339 |
| HpaII | CCGG | 1 cut(s) | 1196 |
| HphI | GGTGA | 1 cut(s) | 856 |
| Hpy166II | GTNNAC | 6 cut(s) | 157, 456, 549, 615, 865, 1101 |
| Hpy188I | TCNGA | 4 cut(s) | 10, 31, 469, 1038 |
| Hpy188III | TCNNGA | 7 cut(s) | 143, 272, 407, 652, 896, 1114, 1390 |
| Hpy8I | GTNNAC | 6 cut(s) | 157, 456, 549, 615, 865, 1101 |
| HpyAV | CCTTC | 7 cut(s) | 49, 181, 580, 767, 1303, 1329, 1411 |
| HpyCH4III | ACNGT | 3 cut(s) | 154, 739, 1451 |
| HpyCH4IV | ACGT | 1 cut(s) | 753 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1083, 1273 |
| HpyF3I | CTNAG | 7 cut(s) | 7, 698, 1128, 1293, 1326, 1352, 1482 |
| HpySE526I | ACGT | 1 cut(s) | 753 |
| Hsp92I | GRCGYC | 1 cut(s) | 753 |
| Hsp92II | CATG | 5 cut(s) | 231, 655, 1094, 1117, 1171 |
| KpnI | GGTACC | 2 cut(s) | 1374, 1491 |
| Kzo9I | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| LmnI | GCTCC | 4 cut(s) | 91, 173, 373, 446 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 106, 937, 1371 |
| LweI | GCATC | 5 cut(s) | 322, 550, 1086, 1225, 1288 |
| MaeI | CTAG | 2 cut(s) | 1221, 1569 |
| MaeII | ACGT | 1 cut(s) | 753 |
| MaeIII | GTNAC | 3 cut(s) | 176, 749, 1397 |
| MalI | GATC | 6 cut(s) | 141, 522, 693, 900, 1015, 1143 |
| MboI | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| MboII | GAAGA | 8 cut(s) | 142, 868, 901, 946, 1025, 1053, 1235, 1458 |
| MfeI | CAATTG | 1 cut(s) | 1363 |
| MflI | RGATCY | 3 cut(s) | 691, 898, 1013 |
| MhlI | GDGCHC | 2 cut(s) | 727, 1383 |
| MluCI | AATT | 6 cut(s) | 566, 1188, 1239, 1345, 1363, 1582 |
| MlyI | GAGTC | 2 cut(s) | 301, 513 |
| MmeI | TCCRAC | 3 cut(s) | 374, 992, 1206 |
| Mph1103I | ATGCAT | 2 cut(s) | 790, 1303 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1465 |
| MslI | CAYNNNNRTG | 2 cut(s) | 740, 1354 |
| MspCI | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| MspI | CCGG | 1 cut(s) | 1196 |
| MspR9I | CCNGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| MunI | CAATTG | 1 cut(s) | 1363 |
| Mva1269I | GAATGC | 1 cut(s) | 963 |
| MvaI | CCWGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1083, 1273 |
| NdeI | CATATG | 2 cut(s) | 298, 514 |
| NdeII | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| NlaIII | CATG | 5 cut(s) | 231, 655, 1094, 1117, 1171 |
| NlaIV | GGNNCC | 4 cut(s) | 666, 1372, 1462, 1489 |
| NmuCI | GTSAC | 2 cut(s) | 749, 1397 |
| NsiI | ATGCAT | 2 cut(s) | 790, 1303 |
| NspI | RCATGY | 2 cut(s) | 231, 1094 |
| OliI | CACNNNNGTG | 2 cut(s) | 740, 1354 |
| PaeI | GCATGC | 1 cut(s) | 231 |
| PagI | TCATGA | 2 cut(s) | 651, 1113 |
| PciI | ACATGT | 1 cut(s) | 1090 |
| PctI | GAATGC | 1 cut(s) | 963 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1465 |
| PfeI | GAWTC | 3 cut(s) | 655, 892, 1339 |
| PfoI | TCCNGGA | 1 cut(s) | 571 |
| PkrI | GCNGC | 4 cut(s) | 61, 121, 952, 1361 |
| PleI | GAGTC | 2 cut(s) | 300, 512 |
| PpsI | GAGTC | 2 cut(s) | 300, 512 |
| PscI | ACATGT | 1 cut(s) | 1090 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp6I | CCWGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| PspFI | CCCAGC | 2 cut(s) | 449, 1330 |
| PspGI | CCWGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| PspN4I | GGNNCC | 4 cut(s) | 666, 1372, 1462, 1489 |
| PspPI | GGNCC | 3 cut(s) | 589, 600, 717 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1453, 1485 |
| PsuI | RGATCY | 3 cut(s) | 691, 898, 1013 |
| RsaI | GTAC | 3 cut(s) | 1256, 1372, 1489 |
| RsaNI | GTAC | 3 cut(s) | 1255, 1371, 1488 |
| RseI | CAYNNNNRTG | 2 cut(s) | 740, 1354 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| SatI | GCNGC | 4 cut(s) | 60, 120, 951, 1360 |
| Sau3AI | GATC | 6 cut(s) | 139, 520, 691, 898, 1013, 1141 |
| Sau96I | GGNCC | 3 cut(s) | 589, 600, 717 |
| SchI | GAGTC | 2 cut(s) | 301, 513 |
| ScrFI | CCNGG | 6 cut(s) | 183, 573, 721, 1252, 1269, 1478 |
| SduI | GDGCHC | 2 cut(s) | 727, 1383 |
| SfaNI | GCATC | 5 cut(s) | 322, 550, 1086, 1225, 1288 |
| SfcI | CTRYAG | 1 cut(s) | 1054 |
| SinI | GGWCC | 2 cut(s) | 589, 717 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 740, 1354 |
| SmlI | CTYRAG | 3 cut(s) | 287, 1532, 1553 |
| SmoI | CTYRAG | 3 cut(s) | 287, 1532, 1553 |
| SphI | GCATGC | 1 cut(s) | 231 |
| Sse9I | AATT | 6 cut(s) | 566, 1188, 1239, 1345, 1363, 1582 |
| SspI | AATATT | 2 cut(s) | 98, 927 |
| SspMI | CTAG | 2 cut(s) | 1221, 1569 |
| StyD4I | CCNGG | 6 cut(s) | 181, 571, 719, 1250, 1267, 1476 |
| StyI | CCWWGG | 1 cut(s) | 1374 |
| TaaI | ACNGT | 3 cut(s) | 154, 739, 1451 |
| TaiI | ACGT | 1 cut(s) | 756 |
| TaqI | TCGA | 1 cut(s) | 156 |
| TasI | AATT | 6 cut(s) | 566, 1188, 1239, 1345, 1363, 1582 |
| TfiI | GAWTC | 3 cut(s) | 655, 892, 1339 |
| TscAI | CASTG | 4 cut(s) | 194, 742, 822, 1456 |
| TseFI | GTSAC | 2 cut(s) | 749, 1397 |
| TseI | GCWGC | 4 cut(s) | 59, 119, 950, 1359 |
| Tsp45I | GTSAC | 2 cut(s) | 749, 1397 |
| TspDTI | ATGAA | 5 cut(s) | 451, 668, 869, 902, 1102 |
| TspRI | CASTG | 4 cut(s) | 194, 742, 822, 1456 |
| Vha464I | CTTAAG | 3 cut(s) | 287, 1532, 1553 |
| VpaK11BI | GGWCC | 2 cut(s) | 589, 717 |
| XapI | RAATTY | 2 cut(s) | 566, 1345 |
| XceI | RCATGY | 2 cut(s) | 231, 1094 |
| XmiI | GTMKAC | 2 cut(s) | 156, 1100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1465 |
| XspI | CTAG | 2 cut(s) | 1221, 1569 |
| ZraI | GACGTC | 1 cut(s) | 754 |
| Zsp2I | ATGCAT | 2 cut(s) | 790, 1303 |