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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 26 |
| Acc65I | GGTACC | 1 cut(s) | 431 |
| AccB1I | GGYRCC | 2 cut(s) | 431, 1038 |
| AciI | CCGC | 3 cut(s) | 250, 297, 1059 |
| AclI | AACGTT | 1 cut(s) | 466 |
| AclWI | GGATC | 4 cut(s) | 178, 354, 639, 911 |
| AcoI | YGGCCR | 2 cut(s) | 375, 1104 |
| AcsI | RAATTY | 2 cut(s) | 52, 87 |
| AcuI | CTGAAG | 2 cut(s) | 142, 1332 |
| AfaI | GTAC | 6 cut(s) | 433, 935, 956, 1023, 1089, 1196 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 926 |
| AgeI | ACCGGT | 1 cut(s) | 434 |
| AgsI | TTSAA | 6 cut(s) | 148, 415, 534, 587, 682, 1054 |
| AjnI | CCWGG | 3 cut(s) | 525, 920, 1090 |
| AleI | CACNNNNGTG | 1 cut(s) | 1148 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| AluBI | AGCT | 5 cut(s) | 67, 274, 499, 623, 833 |
| AluI | AGCT | 5 cut(s) | 67, 274, 499, 623, 833 |
| Alw21I | GWGCWC | 2 cut(s) | 69, 609 |
| Alw26I | GTCTC | 2 cut(s) | 158, 655 |
| AlwI | GGATC | 4 cut(s) | 178, 354, 639, 911 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1154 |
| Ama87I | CYCGRG | 1 cut(s) | 266 |
| AoxI | GGCC | 3 cut(s) | 192, 375, 1104 |
| ApeKI | GCWGC | 6 cut(s) | 271, 833, 945, 989, 1114, 1277 |
| ApoI | RAATTY | 2 cut(s) | 52, 87 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1166, 1198 |
| AsiGI | ACCGGT | 1 cut(s) | 434 |
| Asp718I | GGTACC | 1 cut(s) | 431 |
| AspA2I | CCTAGG | 1 cut(s) | 188 |
| AspS9I | GGNCC | 2 cut(s) | 192, 450 |
| AsuHPI | GGTGA | 4 cut(s) | 499, 865, 1109, 1241 |
| AvaI | CYCGRG | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 450 |
| AvrII | CCTAGG | 1 cut(s) | 188 |
| BaeGI | GKGCMC | 1 cut(s) | 1043 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 582, 615, 1071, 1104 |
| BalI | TGGCCA | 1 cut(s) | 1106 |
| BanI | GGYRCC | 2 cut(s) | 431, 1038 |
| BanII | GRGCYC | 2 cut(s) | 69, 894 |
| Bbv12I | GWGCWC | 2 cut(s) | 69, 609 |
| BbvCI | CCTCAGC | 1 cut(s) | 1155 |
| BbvI | GCAGC | 6 cut(s) | 283, 820, 932, 976, 1126, 1264 |
| BccI | CCATC | 5 cut(s) | 92, 518, 728, 749, 898 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1107, 1141 |
| BciT130I | CCWGG | 3 cut(s) | 527, 922, 1092 |
| BciVI | GTATCC | 1 cut(s) | 803 |
| BclI | TGATCA | 1 cut(s) | 1131 |
| BcoDI | GTCTC | 2 cut(s) | 158, 655 |
| BfaI | CTAG | 4 cut(s) | 111, 189, 650, 1351 |
| BfuAI | ACCTGC | 1 cut(s) | 26 |
| BfuI | GTATCC | 1 cut(s) | 803 |
| BglII | AGATCT | 2 cut(s) | 855, 1270 |
| BisI | GCNGC | 7 cut(s) | 272, 297, 834, 946, 990, 1115, 1278 |
| BlnI | CCTAGG | 1 cut(s) | 188 |
| BlsI | GCNGC | 7 cut(s) | 273, 298, 835, 947, 991, 1116, 1279 |
| Bme1390I | CCNGG | 3 cut(s) | 527, 922, 1092 |
| Bme18I | GGWCC | 1 cut(s) | 450 |
| BmeT110I | CYCGRG | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 2 cut(s) | 192, 450 |
| BmiI | GGNNCC | 5 cut(s) | 213, 433, 451, 739, 1040 |
| BmrFI | CCNGG | 3 cut(s) | 527, 922, 1092 |
| BmsI | GCATC | 3 cut(s) | 96, 130, 283 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 842, 874, 1148, 1180 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1155 |
| BpuEI | CTTGAG | 3 cut(s) | 98, 880, 1304 |
| BsaAI | YACGTR | 1 cut(s) | 791 |
| BsaI | GGTCTC | 1 cut(s) | 655 |
| BsaJI | CCNNGG | 6 cut(s) | 188, 525, 920, 975, 1091, 1107 |
| BsaWI | WCCGGW | 1 cut(s) | 434 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 926 |
| Bse118I | RCCGGY | 1 cut(s) | 434 |
| Bse1I | ACTGG | 6 cut(s) | 172, 244, 394, 1040, 1051, 1223 |
| BseBI | CCWGG | 3 cut(s) | 527, 922, 1092 |
| BseDI | CCNNGG | 6 cut(s) | 188, 525, 920, 975, 1091, 1107 |
| BseGI | GGATG | 3 cut(s) | 145, 707, 1327 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 926 |
| BseMII | CTCAG | 4 cut(s) | 843, 858, 1146, 1269 |
| BseNI | ACTGG | 6 cut(s) | 172, 244, 394, 1040, 1051, 1223 |
| BseRI | GAGGAG | 1 cut(s) | 799 |
| BseSI | GKGCMC | 1 cut(s) | 1043 |
| BseXI | GCAGC | 6 cut(s) | 283, 820, 932, 976, 1126, 1264 |
| BseYI | CCCAGC | 1 cut(s) | 60 |
| BsgI | GTGCAG | 2 cut(s) | 1133, 1263 |
| BshFI | GGCC | 3 cut(s) | 194, 377, 1106 |
| BshNI | GGYRCC | 2 cut(s) | 431, 1038 |
| BshTI | ACCGGT | 1 cut(s) | 434 |
| BsiHKAI | GWGCWC | 2 cut(s) | 69, 609 |
| BsiHKCI | CYCGRG | 1 cut(s) | 266 |
| BsiSI | CCGG | 1 cut(s) | 435 |
| BslFI | GGGAC | 1 cut(s) | 764 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 926 |
| BsmAI | GTCTC | 2 cut(s) | 158, 655 |
| BsmFI | GGGAC | 1 cut(s) | 764 |
| BsmI | GAATGC | 1 cut(s) | 18 |
| BsnI | GGCC | 3 cut(s) | 194, 377, 1106 |
| Bso31I | GGTCTC | 1 cut(s) | 655 |
| BsoBI | CYCGRG | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 4 cut(s) | 69, 609, 894, 1043 |
| Bsp1407I | TGTACA | 2 cut(s) | 954, 1021 |
| BspACI | CCGC | 3 cut(s) | 250, 297, 1059 |
| BspANI | GGCC | 3 cut(s) | 194, 377, 1106 |
| BspCNI | CTCAG | 4 cut(s) | 842, 859, 1147, 1268 |
| BspLI | GGNNCC | 5 cut(s) | 213, 433, 451, 739, 1040 |
| BspMI | ACCTGC | 1 cut(s) | 26 |
| BspPI | GGATC | 4 cut(s) | 178, 354, 639, 911 |
| BspT107I | GGYRCC | 2 cut(s) | 431, 1038 |
| BspTNI | GGTCTC | 1 cut(s) | 655 |
| BsrFI | RCCGGY | 1 cut(s) | 434 |
| BsrGI | TGTACA | 2 cut(s) | 954, 1021 |
| BsrI | ACTGG | 6 cut(s) | 172, 244, 394, 1040, 1051, 1223 |
| BssAI | RCCGGY | 1 cut(s) | 434 |
| BssECI | CCNNGG | 6 cut(s) | 188, 525, 920, 975, 1091, 1107 |
| BssT1I | CCWWGG | 3 cut(s) | 188, 975, 1107 |
| Bst2UI | CCWGG | 3 cut(s) | 527, 922, 1092 |
| Bst4CI | ACNGT | 5 cut(s) | 220, 328, 1021, 1026, 1084 |
| Bst6I | CTCTTC | 1 cut(s) | 1323 |
| BstAUI | TGTACA | 2 cut(s) | 954, 1021 |
| BstBAI | YACGTR | 1 cut(s) | 791 |
| BstC8I | GCNNGC | 4 cut(s) | 33, 179, 943, 1119 |
| BstDEI | CTNAG | 4 cut(s) | 829, 867, 1155, 1255 |
| BstF5I | GGATG | 3 cut(s) | 145, 707, 1327 |
| BstMAI | GTCTC | 2 cut(s) | 158, 655 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 249, 839, 995, 1134 |
| BstNI | CCWGG | 3 cut(s) | 527, 922, 1092 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstSCI | CCNGG | 3 cut(s) | 525, 920, 1090 |
| BstSLI | GKGCMC | 1 cut(s) | 1043 |
| BstV1I | GCAGC | 6 cut(s) | 283, 820, 932, 976, 1126, 1264 |
| BstX2I | RGATCY | 4 cut(s) | 346, 644, 855, 1270 |
| BstYI | RGATCY | 4 cut(s) | 346, 644, 855, 1270 |
| BsuI | GTATCC | 1 cut(s) | 803 |
| BsuRI | GGCC | 3 cut(s) | 194, 377, 1106 |
| BtsCI | GGATG | 3 cut(s) | 145, 707, 1327 |
| BtsI | GCAGTG | 1 cut(s) | 1155 |
| BtsIMutI | CAGTG | 4 cut(s) | 166, 387, 1155, 1216 |
| BveI | ACCTGC | 1 cut(s) | 26 |
| Cac8I | GCNNGC | 4 cut(s) | 33, 179, 943, 1119 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1154 |
| Cfr10I | RCCGGY | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 2 cut(s) | 192, 450 |
| Csp6I | GTAC | 6 cut(s) | 432, 934, 955, 1022, 1088, 1195 |
| CspAI | ACCGGT | 1 cut(s) | 434 |
| CviQI | GTAC | 6 cut(s) | 432, 934, 955, 1022, 1088, 1195 |
| DdeI | CTNAG | 4 cut(s) | 829, 867, 1155, 1255 |
| EaeI | YGGCCR | 2 cut(s) | 375, 1104 |
| Eam1104I | CTCTTC | 1 cut(s) | 1323 |
| EarI | CTCTTC | 1 cut(s) | 1323 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 3 cut(s) | 188, 975, 1107 |
| Eco24I | GRGCYC | 2 cut(s) | 69, 894 |
| Eco31I | GGTCTC | 1 cut(s) | 655 |
| Eco47I | GGWCC | 1 cut(s) | 450 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 2 cut(s) | 142, 1332 |
| Eco88I | CYCGRG | 1 cut(s) | 266 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 450 |
| EcoRI | GAATTC | 1 cut(s) | 87 |
| EcoRII | CCWGG | 3 cut(s) | 525, 920, 1090 |
| EcoT14I | CCWWGG | 3 cut(s) | 188, 975, 1107 |
| EcoT38I | GRGCYC | 2 cut(s) | 69, 894 |
| ErhI | CCWWGG | 3 cut(s) | 188, 975, 1107 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 127, 159 |
| FaqI | GGGAC | 1 cut(s) | 764 |
| FauNDI | CATATG | 1 cut(s) | 814 |
| FbaI | TGATCA | 1 cut(s) | 1131 |
| Fnu4HI | GCNGC | 7 cut(s) | 272, 297, 834, 946, 990, 1115, 1278 |
| FokI | GGATG | 3 cut(s) | 152, 694, 1334 |
| FriOI | GRGCYC | 2 cut(s) | 69, 894 |
| Fsp4HI | GCNGC | 7 cut(s) | 272, 297, 834, 946, 990, 1115, 1278 |
| FspBI | CTAG | 4 cut(s) | 111, 189, 650, 1351 |
| GluI | GCNGC | 7 cut(s) | 272, 297, 834, 946, 990, 1115, 1278 |
| GsaI | CCCAGC | 1 cut(s) | 64 |
| HaeIII | GGCC | 3 cut(s) | 194, 377, 1106 |
| HapII | CCGG | 1 cut(s) | 435 |
| HincII | GTYRAC | 2 cut(s) | 985, 1033 |
| HindII | GTYRAC | 2 cut(s) | 985, 1033 |
| HindIII | AAGCTT | 1 cut(s) | 497 |
| HinfI | GANTC | 2 cut(s) | 504, 1050 |
| HpaI | GTTAAC | 1 cut(s) | 985 |
| HpaII | CCGG | 1 cut(s) | 435 |
| HphI | GGTGA | 4 cut(s) | 499, 865, 1109, 1241 |
| Hpy166II | GTNNAC | 4 cut(s) | 395, 985, 1033, 1216 |
| Hpy188I | TCNGA | 3 cut(s) | 50, 105, 1258 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 209, 658, 766, 866 |
| Hpy8I | GTNNAC | 4 cut(s) | 395, 985, 1033, 1216 |
| HpyAV | CCTTC | 6 cut(s) | 129, 163, 528, 1226, 1238, 1307 |
| HpyCH4III | ACNGT | 5 cut(s) | 220, 328, 1021, 1026, 1084 |
| HpyCH4IV | ACGT | 3 cut(s) | 466, 790, 981 |
| HpyCH4V | TGCA | 9 cut(s) | 311, 387, 639, 836, 881, 998, 1114, 1128, 1280 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 249, 839, 995, 1134 |
| HpyF3I | CTNAG | 4 cut(s) | 829, 867, 1155, 1255 |
| HpySE526I | ACGT | 3 cut(s) | 466, 790, 981 |
| KpnI | GGTACC | 1 cut(s) | 435 |
| Ksp22I | TGATCA | 1 cut(s) | 1131 |
| KspAI | GTTAAC | 1 cut(s) | 985 |
| LmnI | GCTCC | 3 cut(s) | 64, 737, 823 |
| Lsp1109I | GCAGC | 6 cut(s) | 283, 820, 932, 976, 1126, 1264 |
| LweI | GCATC | 3 cut(s) | 96, 130, 283 |
| MaeI | CTAG | 4 cut(s) | 111, 189, 650, 1351 |
| MaeII | ACGT | 3 cut(s) | 466, 790, 981 |
| MaeIII | GTNAC | 2 cut(s) | 113, 754 |
| MboII | GAAGA | 5 cut(s) | 148, 302, 1253, 1280, 1340 |
| MfeI | CAATTG | 1 cut(s) | 382 |
| MflI | RGATCY | 4 cut(s) | 346, 644, 855, 1270 |
| MhlI | GDGCHC | 4 cut(s) | 69, 609, 894, 1043 |
| MlsI | TGGCCA | 1 cut(s) | 1106 |
| MluCI | AATT | 6 cut(s) | 52, 87, 339, 371, 382, 676 |
| MluNI | TGGCCA | 1 cut(s) | 1106 |
| MmeI | TCCRAC | 4 cut(s) | 28, 112, 310, 1103 |
| Mox20I | TGGCCA | 1 cut(s) | 1106 |
| MscI | TGGCCA | 1 cut(s) | 1106 |
| MseI | TTAA | 3 cut(s) | 950, 984, 1065 |
| MslI | CAYNNNNRTG | 3 cut(s) | 594, 1148, 1221 |
| Msp20I | TGGCCA | 1 cut(s) | 1106 |
| MspA1I | CMGCKG | 1 cut(s) | 833 |
| MspI | CCGG | 1 cut(s) | 435 |
| MspR9I | CCNGG | 3 cut(s) | 527, 922, 1092 |
| MunI | CAATTG | 1 cut(s) | 382 |
| Mva1269I | GAATGC | 1 cut(s) | 18 |
| MvaI | CCWGG | 3 cut(s) | 527, 922, 1092 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 249, 839, 995, 1134 |
| NdeI | CATATG | 1 cut(s) | 814 |
| NlaIV | GGNNCC | 5 cut(s) | 213, 433, 451, 739, 1040 |
| NmuCI | GTSAC | 2 cut(s) | 113, 754 |
| NspI | RCATGY | 1 cut(s) | 185 |
| OliI | CACNNNNGTG | 1 cut(s) | 1148 |
| PctI | GAATGC | 1 cut(s) | 18 |
| PfeI | GAWTC | 2 cut(s) | 504, 1050 |
| PinAI | ACCGGT | 1 cut(s) | 434 |
| PkrI | GCNGC | 7 cut(s) | 273, 298, 835, 947, 991, 1116, 1279 |
| Ppu21I | YACGTR | 1 cut(s) | 791 |
| PpuMI | RGGWCCY | 1 cut(s) | 450 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| Psp1406I | AACGTT | 1 cut(s) | 466 |
| Psp5II | RGGWCCY | 1 cut(s) | 450 |
| Psp6I | CCWGG | 3 cut(s) | 525, 920, 1090 |
| PspFI | CCCAGC | 1 cut(s) | 60 |
| PspGI | CCWGG | 3 cut(s) | 525, 920, 1090 |
| PspN4I | GGNNCC | 5 cut(s) | 213, 433, 451, 739, 1040 |
| PspPI | GGNCC | 2 cut(s) | 192, 450 |
| PspPPI | RGGWCCY | 1 cut(s) | 450 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1154 |
| PsuI | RGATCY | 4 cut(s) | 346, 644, 855, 1270 |
| PvuII | CAGCTG | 1 cut(s) | 833 |
| RsaI | GTAC | 6 cut(s) | 433, 935, 956, 1023, 1089, 1196 |
| RsaNI | GTAC | 6 cut(s) | 432, 934, 955, 1022, 1088, 1195 |
| RseI | CAYNNNNRTG | 3 cut(s) | 594, 1148, 1221 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 3 cut(s) | 950, 984, 1065 |
| SatI | GCNGC | 7 cut(s) | 272, 297, 834, 946, 990, 1115, 1278 |
| Sau96I | GGNCC | 2 cut(s) | 192, 450 |
| ScrFI | CCNGG | 3 cut(s) | 527, 922, 1092 |
| SduI | GDGCHC | 4 cut(s) | 69, 609, 894, 1043 |
| SfaNI | GCATC | 3 cut(s) | 96, 130, 283 |
| SinI | GGWCC | 1 cut(s) | 450 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 594, 1148, 1221 |
| SmlI | CTYRAG | 3 cut(s) | 77, 895, 1283 |
| SmoI | CTYRAG | 3 cut(s) | 77, 895, 1283 |
| Sse9I | AATT | 6 cut(s) | 52, 87, 339, 371, 382, 676 |
| SsiI | CCGC | 3 cut(s) | 250, 297, 1059 |
| SspMI | CTAG | 4 cut(s) | 111, 189, 650, 1351 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StyD4I | CCNGG | 3 cut(s) | 525, 920, 1090 |
| StyI | CCWWGG | 3 cut(s) | 188, 975, 1107 |
| TaaI | ACNGT | 5 cut(s) | 220, 328, 1021, 1026, 1084 |
| TaiI | ACGT | 3 cut(s) | 469, 793, 984 |
| TaqI | TCGA | 3 cut(s) | 361, 546, 657 |
| TasI | AATT | 6 cut(s) | 52, 87, 339, 371, 382, 676 |
| TatI | WGTACW | 4 cut(s) | 933, 954, 1021, 1194 |
| TauI | GCSGC | 1 cut(s) | 299 |
| TfiI | GAWTC | 2 cut(s) | 504, 1050 |
| Tru1I | TTAA | 3 cut(s) | 950, 984, 1065 |
| Tru9I | TTAA | 3 cut(s) | 950, 984, 1065 |
| TscAI | CASTG | 4 cut(s) | 166, 394, 1155, 1223 |
| TseFI | GTSAC | 2 cut(s) | 113, 754 |
| TseI | GCWGC | 6 cut(s) | 271, 833, 945, 989, 1114, 1277 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 754 |
| TspDTI | ATGAA | 8 cut(s) | 11, 45, 243, 633, 696, 790, 1086, 1341 |
| TspRI | CASTG | 4 cut(s) | 166, 394, 1155, 1223 |
| VpaK11BI | GGWCC | 1 cut(s) | 450 |
| XapI | RAATTY | 2 cut(s) | 52, 87 |
| XceI | RCATGY | 1 cut(s) | 185 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1223 |
| XmaJI | CCTAGG | 1 cut(s) | 188 |
| XspI | CTAG | 4 cut(s) | 111, 189, 650, 1351 |