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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1139 |
| Acc16I | TGCGCA | 1 cut(s) | 439 |
| AccII | CGCG | 2 cut(s) | 1326, 1466 |
| AccIII | TCCGGA | 1 cut(s) | 601 |
| AciI | CCGC | 8 cut(s) | 785, 1324, 1445, 1461, 1466, 1476, 1479, 1482 |
| AclI | AACGTT | 1 cut(s) | 1305 |
| AclWI | GGATC | 5 cut(s) | 301, 593, 606, 1167, 1175 |
| AcoI | YGGCCR | 2 cut(s) | 1364, 1384 |
| AcsI | RAATTY | 4 cut(s) | 35, 446, 1047, 1402 |
| AcuI | CTGAAG | 4 cut(s) | 491, 587, 1235, 1454 |
| AfaI | GTAC | 3 cut(s) | 252, 476, 671 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 888, 1382 |
| AflII | CTTAAG | 1 cut(s) | 587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1100, 1132 |
| AlwI | GGATC | 5 cut(s) | 301, 593, 606, 1167, 1175 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1070 |
| Aor13HI | TCCGGA | 1 cut(s) | 601 |
| AoxI | GGCC | 6 cut(s) | 1142, 1222, 1350, 1364, 1384, 1467 |
| ApeKI | GCWGC | 4 cut(s) | 233, 307, 920, 1212 |
| ApoI | RAATTY | 4 cut(s) | 35, 446, 1047, 1402 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AspLEI | GCGC | 2 cut(s) | 440, 1466 |
| AspS9I | GGNCC | 2 cut(s) | 496, 1350 |
| AsuC2I | CCSGG | 1 cut(s) | 1217 |
| AsuHPI | GGTGA | 4 cut(s) | 475, 965, 1282, 1389 |
| AvaII | GGWCC | 1 cut(s) | 496 |
| BamHI | GGATCC | 1 cut(s) | 598 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 458, 490 |
| BbvCI | CCTCAGC | 1 cut(s) | 963 |
| BbvI | GCAGC | 4 cut(s) | 220, 294, 907, 1224 |
| BccI | CCATC | 8 cut(s) | 13, 326, 515, 1026, 1192, 1267, 1387, 1419 |
| BceAI | ACGGC | 2 cut(s) | 1423, 1474 |
| BclI | TGATCA | 2 cut(s) | 154, 408 |
| BcnI | CCSGG | 1 cut(s) | 1217 |
| BfaI | CTAG | 3 cut(s) | 356, 774, 1473 |
| BfrI | CTTAAG | 1 cut(s) | 587 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1221 |
| BmcAI | AGTACT | 1 cut(s) | 476 |
| Bme1390I | CCNGG | 1 cut(s) | 1217 |
| Bme18I | GGWCC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 2 cut(s) | 496, 1350 |
| BmiI | GGNNCC | 5 cut(s) | 339, 600, 651, 985, 1262 |
| BmrFI | CCNGG | 1 cut(s) | 1217 |
| BmsI | GCATC | 1 cut(s) | 1236 |
| BpmI | CTGGAG | 1 cut(s) | 206 |
| Bpu10I | CCTNAGC | 1 cut(s) | 963 |
| BpuEI | CTTGAG | 1 cut(s) | 1102 |
| BpuMI | CCSGG | 1 cut(s) | 1217 |
| BsaBI | GATNNNNATC | 2 cut(s) | 153, 506 |
| BsaJI | CCNNGG | 2 cut(s) | 865, 887 |
| BsaWI | WCCGGW | 1 cut(s) | 601 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 888, 1382 |
| Bse1I | ACTGG | 2 cut(s) | 553, 1048 |
| Bse3DI | GCAATG | 1 cut(s) | 1183 |
| Bse8I | GATNNNNATC | 2 cut(s) | 153, 506 |
| BseAI | TCCGGA | 1 cut(s) | 601 |
| BseDI | CCNNGG | 2 cut(s) | 865, 887 |
| BseGI | GGATG | 3 cut(s) | 196, 1251, 1379 |
| BseJI | GATNNNNATC | 2 cut(s) | 153, 506 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 888, 1382 |
| BseMI | GCAATG | 1 cut(s) | 1183 |
| BseMII | CTCAG | 1 cut(s) | 954 |
| BseNI | ACTGG | 2 cut(s) | 553, 1048 |
| BseRI | GAGGAG | 3 cut(s) | 818, 1365, 1419 |
| BseXI | GCAGC | 4 cut(s) | 220, 294, 907, 1224 |
| Bsh1236I | CGCG | 2 cut(s) | 1326, 1466 |
| BshFI | GGCC | 6 cut(s) | 1144, 1224, 1352, 1366, 1386, 1469 |
| BsiSI | CCGG | 6 cut(s) | 311, 341, 602, 1216, 1363, 1383 |
| BslFI | GGGAC | 1 cut(s) | 1049 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 888, 1382 |
| BsmFI | GGGAC | 1 cut(s) | 1049 |
| BsnI | GGCC | 6 cut(s) | 1144, 1224, 1352, 1366, 1386, 1469 |
| Bsp13I | TCCGGA | 1 cut(s) | 601 |
| Bsp143I | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| BspACI | CCGC | 8 cut(s) | 785, 1324, 1445, 1461, 1466, 1476, 1479, 1482 |
| BspANI | GGCC | 6 cut(s) | 1144, 1224, 1352, 1366, 1386, 1469 |
| BspCNI | CTCAG | 1 cut(s) | 955 |
| BspEI | TCCGGA | 1 cut(s) | 601 |
| BspFNI | CGCG | 2 cut(s) | 1326, 1466 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspLI | GGNNCC | 5 cut(s) | 339, 600, 651, 985, 1262 |
| BspPI | GGATC | 5 cut(s) | 301, 593, 606, 1167, 1175 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BspTI | CTTAAG | 1 cut(s) | 587 |
| BsrDI | GCAATG | 1 cut(s) | 1183 |
| BsrI | ACTGG | 2 cut(s) | 553, 1048 |
| BssECI | CCNNGG | 2 cut(s) | 865, 887 |
| BssMI | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| BssT1I | CCWWGG | 1 cut(s) | 865 |
| Bst6I | CTCTTC | 4 cut(s) | 198, 377, 662, 821 |
| BstAFI | CTTAAG | 1 cut(s) | 587 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1070 |
| BstC8I | GCNNGC | 1 cut(s) | 1487 |
| BstDEI | CTNAG | 1 cut(s) | 963 |
| BstF5I | GGATG | 3 cut(s) | 196, 1251, 1379 |
| BstFNI | CGCG | 2 cut(s) | 1326, 1466 |
| BstHHI | GCGC | 2 cut(s) | 440, 1466 |
| BstKTI | GATC | 9 cut(s) | 106, 157, 296, 411, 601, 915, 1162, 1183, 1360 |
| BstMBI | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 205, 642, 1070, 1221, 1482 |
| BstNSI | RCATGY | 1 cut(s) | 1020 |
| BstSCI | CCNGG | 1 cut(s) | 1215 |
| BstUI | CGCG | 2 cut(s) | 1326, 1466 |
| BstV1I | GCAGC | 4 cut(s) | 220, 294, 907, 1224 |
| BstX2I | RGATCY | 2 cut(s) | 598, 1159 |
| BstYI | RGATCY | 2 cut(s) | 598, 1159 |
| BsuRI | GGCC | 6 cut(s) | 1144, 1224, 1352, 1366, 1386, 1469 |
| BtsCI | GGATG | 3 cut(s) | 196, 1251, 1379 |
| BtsI | GCAGTG | 2 cut(s) | 97, 586 |
| BtsIMutI | CAGTG | 2 cut(s) | 97, 586 |
| Cac8I | GCNNGC | 1 cut(s) | 1487 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1070 |
| CciI | TCATGA | 1 cut(s) | 391 |
| CfoI | GCGC | 2 cut(s) | 440, 1466 |
| Cfr13I | GGNCC | 2 cut(s) | 496, 1350 |
| CseI | GACGC | 1 cut(s) | 1315 |
| Csp6I | GTAC | 3 cut(s) | 251, 475, 670 |
| CviQI | GTAC | 3 cut(s) | 251, 475, 670 |
| DdeI | CTNAG | 1 cut(s) | 963 |
| DpnI | GATC | 9 cut(s) | 105, 156, 295, 410, 600, 914, 1161, 1182, 1359 |
| DpnII | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| EaeI | YGGCCR | 2 cut(s) | 1364, 1384 |
| Eam1104I | CTCTTC | 4 cut(s) | 198, 377, 662, 821 |
| EarI | CTCTTC | 4 cut(s) | 198, 377, 662, 821 |
| Eco130I | CCWWGG | 1 cut(s) | 865 |
| Eco147I | AGGCCT | 1 cut(s) | 1144 |
| Eco47I | GGWCC | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 4 cut(s) | 491, 587, 1235, 1454 |
| EcoT14I | CCWWGG | 1 cut(s) | 865 |
| EcoT22I | ATGCAT | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 865 |
| FaqI | GGGAC | 1 cut(s) | 1049 |
| FauI | CCCGC | 1 cut(s) | 1331 |
| FauNDI | CATATG | 3 cut(s) | 61, 674, 875 |
| FbaI | TGATCA | 2 cut(s) | 154, 408 |
| FokI | GGATG | 3 cut(s) | 203, 1258, 1366 |
| FspBI | CTAG | 3 cut(s) | 356, 774, 1473 |
| FspI | TGCGCA | 1 cut(s) | 439 |
| GlaI | GCGC | 2 cut(s) | 439, 1465 |
| GsuI | CTGGAG | 1 cut(s) | 206 |
| HaeIII | GGCC | 6 cut(s) | 1144, 1224, 1352, 1366, 1386, 1469 |
| HapII | CCGG | 6 cut(s) | 311, 341, 602, 1216, 1363, 1383 |
| HgaI | GACGC | 1 cut(s) | 1315 |
| HhaI | GCGC | 2 cut(s) | 440, 1466 |
| Hin6I | GCGC | 2 cut(s) | 438, 1464 |
| HinP1I | GCGC | 2 cut(s) | 438, 1464 |
| HincII | GTYRAC | 1 cut(s) | 715 |
| HindII | GTYRAC | 1 cut(s) | 715 |
| HindIII | AAGCTT | 5 cut(s) | 693, 818, 858, 1279, 1487 |
| HinfI | GANTC | 1 cut(s) | 832 |
| HpaII | CCGG | 6 cut(s) | 311, 341, 602, 1216, 1363, 1383 |
| HphI | GGTGA | 4 cut(s) | 475, 965, 1282, 1389 |
| Hpy166II | GTNNAC | 2 cut(s) | 715, 1000 |
| Hpy188I | TCNGA | 5 cut(s) | 298, 331, 1254, 1331, 1434 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 113, 356, 392, 602 |
| Hpy8I | GTNNAC | 2 cut(s) | 715, 1000 |
| Hpy99I | CGWCG | 1 cut(s) | 1358 |
| HpyAV | CCTTC | 6 cut(s) | 219, 284, 296, 562, 974, 1080 |
| HpyCH4IV | ACGT | 2 cut(s) | 668, 1305 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 205, 642, 1070, 1221, 1482 |
| HpyF3I | CTNAG | 1 cut(s) | 963 |
| HpySE526I | ACGT | 2 cut(s) | 668, 1305 |
| HspAI | GCGC | 2 cut(s) | 438, 1464 |
| Kpn2I | TCCGGA | 1 cut(s) | 601 |
| Ksp22I | TGATCA | 2 cut(s) | 154, 408 |
| Kzo9I | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 3 cut(s) | 196, 337, 1266 |
| Lsp1109I | GCAGC | 4 cut(s) | 220, 294, 907, 1224 |
| LweI | GCATC | 1 cut(s) | 1236 |
| MaeI | CTAG | 3 cut(s) | 356, 774, 1473 |
| MaeII | ACGT | 2 cut(s) | 668, 1305 |
| MaeIII | GTNAC | 1 cut(s) | 790 |
| MalI | GATC | 9 cut(s) | 105, 156, 295, 410, 600, 914, 1161, 1182, 1359 |
| MboI | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| MflI | RGATCY | 2 cut(s) | 598, 1159 |
| MluCI | AATT | 9 cut(s) | 35, 325, 421, 446, 637, 1047, 1188, 1238, 1402 |
| MmeI | TCCRAC | 2 cut(s) | 30, 879 |
| Mph1103I | ATGCAT | 1 cut(s) | 61 |
| MroI | TCCGGA | 1 cut(s) | 601 |
| MseI | TTAA | 8 cut(s) | 324, 363, 450, 479, 588, 702, 1149, 1241 |
| MspCI | CTTAAG | 1 cut(s) | 587 |
| MspI | CCGG | 6 cut(s) | 311, 341, 602, 1216, 1363, 1383 |
| MspR9I | CCNGG | 1 cut(s) | 1217 |
| MvnI | CGCG | 2 cut(s) | 1326, 1466 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 205, 642, 1070, 1221, 1482 |
| NciI | CCSGG | 1 cut(s) | 1217 |
| NdeI | CATATG | 3 cut(s) | 61, 674, 875 |
| NdeII | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| NlaIV | GGNNCC | 5 cut(s) | 339, 600, 651, 985, 1262 |
| NmeAIII | GCCGAG | 1 cut(s) | 912 |
| NmuCI | GTSAC | 1 cut(s) | 790 |
| NsbI | TGCGCA | 1 cut(s) | 439 |
| NsiI | ATGCAT | 1 cut(s) | 61 |
| NspI | RCATGY | 1 cut(s) | 1020 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PceI | AGGCCT | 1 cut(s) | 1144 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 1 cut(s) | 832 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| PsiI | TTATAA | 1 cut(s) | 1139 |
| Psp1406I | AACGTT | 1 cut(s) | 1305 |
| PspN4I | GGNNCC | 5 cut(s) | 339, 600, 651, 985, 1262 |
| PspPI | GGNCC | 2 cut(s) | 496, 1350 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1070 |
| PsuI | RGATCY | 2 cut(s) | 598, 1159 |
| RsaI | GTAC | 3 cut(s) | 252, 476, 671 |
| RsaNI | GTAC | 3 cut(s) | 251, 475, 670 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SaqAI | TTAA | 8 cut(s) | 324, 363, 450, 479, 588, 702, 1149, 1241 |
| Sau3AI | GATC | 9 cut(s) | 103, 154, 293, 408, 598, 912, 1159, 1180, 1357 |
| Sau96I | GGNCC | 2 cut(s) | 496, 1350 |
| ScaI | AGTACT | 1 cut(s) | 476 |
| ScrFI | CCNGG | 1 cut(s) | 1217 |
| SfaNI | GCATC | 1 cut(s) | 1236 |
| SinI | GGWCC | 1 cut(s) | 496 |
| SmlI | CTYRAG | 2 cut(s) | 587, 1081 |
| SmoI | CTYRAG | 2 cut(s) | 587, 1081 |
| Sse9I | AATT | 9 cut(s) | 35, 325, 421, 446, 637, 1047, 1188, 1238, 1402 |
| SseBI | AGGCCT | 1 cut(s) | 1144 |
| SsiI | CCGC | 8 cut(s) | 785, 1324, 1445, 1461, 1466, 1476, 1479, 1482 |
| SspI | AATATT | 1 cut(s) | 1205 |
| SspMI | CTAG | 3 cut(s) | 356, 774, 1473 |
| StuI | AGGCCT | 1 cut(s) | 1144 |
| StyD4I | CCNGG | 1 cut(s) | 1215 |
| StyI | CCWWGG | 1 cut(s) | 865 |
| TaiI | ACGT | 2 cut(s) | 671, 1308 |
| TaqI | TCGA | 2 cut(s) | 542, 1496 |
| TasI | AATT | 9 cut(s) | 35, 325, 421, 446, 637, 1047, 1188, 1238, 1402 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TauI | GCSGC | 7 cut(s) | 787, 1448, 1464, 1469, 1479, 1482, 1485 |
| TfiI | GAWTC | 1 cut(s) | 832 |
| Tru1I | TTAA | 8 cut(s) | 324, 363, 450, 479, 588, 702, 1149, 1241 |
| Tru9I | TTAA | 8 cut(s) | 324, 363, 450, 479, 588, 702, 1149, 1241 |
| TscAI | CASTG | 2 cut(s) | 97, 586 |
| TseFI | GTSAC | 1 cut(s) | 790 |
| TseI | GCWGC | 4 cut(s) | 233, 307, 920, 1212 |
| Tsp45I | GTSAC | 1 cut(s) | 790 |
| TspRI | CASTG | 2 cut(s) | 97, 586 |
| Vha464I | CTTAAG | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 1 cut(s) | 496 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XapI | RAATTY | 4 cut(s) | 35, 446, 1047, 1402 |
| XbaI | TCTAGA | 1 cut(s) | 355 |
| XceI | RCATGY | 1 cut(s) | 1020 |
| XspI | CTAG | 3 cut(s) | 356, 774, 1473 |
| ZrmI | AGTACT | 1 cut(s) | 476 |
| Zsp2I | ATGCAT | 1 cut(s) | 61 |