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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 395 |
| AclWI | GGATC | 5 cut(s) | 459, 481, 494, 639, 652 |
| AcsI | RAATTY | 2 cut(s) | 196, 268 |
| AcuI | CTGAAG | 1 cut(s) | 45 |
| AfaI | GTAC | 2 cut(s) | 512, 704 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 483 |
| AflIII | ACRYGT | 1 cut(s) | 600 |
| AgsI | TTSAA | 3 cut(s) | 401, 503, 1043 |
| AjnI | CCWGG | 4 cut(s) | 476, 640, 793, 890 |
| AluBI | AGCT | 7 cut(s) | 32, 57, 218, 434, 608, 802, 942 |
| AluI | AGCT | 7 cut(s) | 32, 57, 218, 434, 608, 802, 942 |
| Alw26I | GTCTC | 1 cut(s) | 875 |
| AlwI | GGATC | 5 cut(s) | 459, 481, 494, 639, 652 |
| AoxI | GGCC | 1 cut(s) | 749 |
| ApeKI | GCWGC | 4 cut(s) | 557, 608, 716, 787 |
| ApoI | RAATTY | 2 cut(s) | 196, 268 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 661, 693 |
| AspS9I | GGNCC | 4 cut(s) | 147, 474, 677, 888 |
| AsuHPI | GGTGA | 3 cut(s) | 301, 353, 359 |
| AsuII | TTCGAA | 1 cut(s) | 1004 |
| AsuNHI | GCTAGC | 1 cut(s) | 326 |
| AvaII | GGWCC | 4 cut(s) | 147, 474, 677, 888 |
| BamHI | GGATCC | 2 cut(s) | 486, 644 |
| BbvCI | CCTCAGC | 1 cut(s) | 447 |
| BbvI | GCAGC | 4 cut(s) | 569, 595, 728, 799 |
| BccI | CCATC | 3 cut(s) | 83, 668, 761 |
| BciT130I | CCWGG | 4 cut(s) | 478, 642, 795, 892 |
| BclI | TGATCA | 1 cut(s) | 589 |
| BcoDI | GTCTC | 1 cut(s) | 875 |
| BfaI | CTAG | 2 cut(s) | 327, 990 |
| BfmI | CTRYAG | 2 cut(s) | 33, 810 |
| BfuAI | ACCTGC | 1 cut(s) | 395 |
| BglII | AGATCT | 1 cut(s) | 154 |
| BisI | GCNGC | 4 cut(s) | 558, 609, 717, 788 |
| BlsI | GCNGC | 4 cut(s) | 559, 610, 718, 789 |
| Bme1390I | CCNGG | 4 cut(s) | 478, 642, 795, 892 |
| Bme18I | GGWCC | 4 cut(s) | 147, 474, 677, 888 |
| BmgT120I | GGNCC | 4 cut(s) | 147, 474, 677, 888 |
| BmiI | GGNNCC | 4 cut(s) | 488, 646, 692, 896 |
| BmrFI | CCNGG | 4 cut(s) | 478, 642, 795, 892 |
| BmrI | ACTGGG | 1 cut(s) | 839 |
| BmsI | GCATC | 2 cut(s) | 799, 814 |
| BmtI | GCTAGC | 1 cut(s) | 330 |
| BmuI | ACTGGG | 1 cut(s) | 839 |
| BpmI | CTGGAG | 1 cut(s) | 378 |
| Bpu10I | CCTNAGC | 2 cut(s) | 447, 629 |
| Bpu14I | TTCGAA | 1 cut(s) | 1004 |
| BpuEI | CTTGAG | 2 cut(s) | 79, 420 |
| BsaBI | GATNNNNATC | 2 cut(s) | 93, 704 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 336 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 376, 406 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 483 |
| Bse1I | ACTGG | 3 cut(s) | 16, 395, 845 |
| Bse8I | GATNNNNATC | 2 cut(s) | 93, 704 |
| BseBI | CCWGG | 4 cut(s) | 478, 642, 795, 892 |
| BseDI | CCNNGG | 2 cut(s) | 137, 336 |
| BseGI | GGATG | 7 cut(s) | 88, 573, 679, 705, 772, 790, 843 |
| BseJI | GATNNNNATC | 2 cut(s) | 93, 704 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 483 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseNI | ACTGG | 3 cut(s) | 16, 395, 845 |
| BseRI | GAGGAG | 1 cut(s) | 124 |
| BseXI | GCAGC | 4 cut(s) | 569, 595, 728, 799 |
| BseYI | CCCAGC | 1 cut(s) | 973 |
| BsgI | GTGCAG | 2 cut(s) | 186, 551 |
| BshFI | GGCC | 1 cut(s) | 751 |
| BslFI | GGGAC | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 483 |
| BsmAI | GTCTC | 1 cut(s) | 875 |
| BsmFI | GGGAC | 1 cut(s) | 317 |
| BsnI | GGCC | 1 cut(s) | 751 |
| Bsp119I | TTCGAA | 1 cut(s) | 1004 |
| Bsp1407I | TGTACA | 1 cut(s) | 702 |
| Bsp143I | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| BspANI | GGCC | 1 cut(s) | 751 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspLI | GGNNCC | 4 cut(s) | 488, 646, 692, 896 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 1 cut(s) | 395 |
| BspOI | GCTAGC | 1 cut(s) | 330 |
| BspPI | GGATC | 5 cut(s) | 459, 481, 494, 639, 652 |
| BspT104I | TTCGAA | 1 cut(s) | 1004 |
| BsrGI | TGTACA | 1 cut(s) | 702 |
| BsrI | ACTGG | 3 cut(s) | 16, 395, 845 |
| BssECI | CCNNGG | 2 cut(s) | 137, 336 |
| BssMI | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| BssT1I | CCWWGG | 2 cut(s) | 137, 336 |
| Bst2UI | CCWGG | 4 cut(s) | 478, 642, 795, 892 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 296, 308 |
| Bst6I | CTCTTC | 1 cut(s) | 72 |
| BstAUI | TGTACA | 1 cut(s) | 702 |
| BstBI | TTCGAA | 1 cut(s) | 1004 |
| BstC8I | GCNNGC | 3 cut(s) | 328, 721, 749 |
| BstDEI | CTNAG | 4 cut(s) | 105, 447, 629, 920 |
| BstF5I | GGATG | 7 cut(s) | 88, 573, 679, 705, 772, 790, 843 |
| BstKTI | GATC | 6 cut(s) | 157, 454, 489, 592, 647, 919 |
| BstMAI | GTCTC | 1 cut(s) | 875 |
| BstMBI | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 554, 729 |
| BstNI | CCWGG | 4 cut(s) | 478, 642, 795, 892 |
| BstNSI | RCATGY | 2 cut(s) | 604, 723 |
| BstSCI | CCNGG | 4 cut(s) | 476, 640, 793, 890 |
| BstSFI | CTRYAG | 2 cut(s) | 33, 810 |
| BstV1I | GCAGC | 4 cut(s) | 569, 595, 728, 799 |
| BstX2I | RGATCY | 4 cut(s) | 154, 451, 486, 644 |
| BstYI | RGATCY | 4 cut(s) | 154, 451, 486, 644 |
| BsuRI | GGCC | 1 cut(s) | 751 |
| BtsCI | GGATG | 7 cut(s) | 88, 573, 679, 705, 772, 790, 843 |
| BtsIMutI | CAGTG | 2 cut(s) | 9, 368 |
| BveI | ACCTGC | 1 cut(s) | 395 |
| Cac8I | GCNNGC | 3 cut(s) | 328, 721, 749 |
| Cfr13I | GGNCC | 4 cut(s) | 147, 474, 677, 888 |
| CsiI | ACCWGGT | 1 cut(s) | 890 |
| Csp6I | GTAC | 2 cut(s) | 511, 703 |
| CviAII | CATG | 5 cut(s) | 601, 720, 776, 885, 1024 |
| CviQI | GTAC | 2 cut(s) | 511, 703 |
| DdeI | CTNAG | 4 cut(s) | 105, 447, 629, 920 |
| DpnI | GATC | 6 cut(s) | 156, 453, 488, 591, 646, 918 |
| DpnII | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| Eam1104I | CTCTTC | 1 cut(s) | 72 |
| EarI | CTCTTC | 1 cut(s) | 72 |
| Eco130I | CCWWGG | 2 cut(s) | 137, 336 |
| Eco147I | AGGCCT | 1 cut(s) | 751 |
| Eco47I | GGWCC | 4 cut(s) | 147, 474, 677, 888 |
| Eco57I | CTGAAG | 1 cut(s) | 45 |
| EcoRII | CCWGG | 4 cut(s) | 476, 640, 793, 890 |
| EcoT14I | CCWWGG | 2 cut(s) | 137, 336 |
| ErhI | CCWWGG | 2 cut(s) | 137, 336 |
| FaeI | CATG | 5 cut(s) | 604, 723, 779, 888, 1027 |
| FaqI | GGGAC | 1 cut(s) | 317 |
| FatI | CATG | 5 cut(s) | 600, 719, 775, 884, 1023 |
| FauNDI | CATATG | 1 cut(s) | 853 |
| FbaI | TGATCA | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 4 cut(s) | 558, 609, 717, 788 |
| FokI | GGATG | 7 cut(s) | 95, 580, 686, 712, 777, 779, 850 |
| Fsp4HI | GCNGC | 4 cut(s) | 558, 609, 717, 788 |
| FspBI | CTAG | 2 cut(s) | 327, 990 |
| GluI | GCNGC | 4 cut(s) | 558, 609, 717, 788 |
| GsaI | CCCAGC | 1 cut(s) | 977 |
| GsuI | CTGGAG | 1 cut(s) | 378 |
| HaeIII | GGCC | 1 cut(s) | 751 |
| Hin1II | CATG | 5 cut(s) | 604, 723, 779, 888, 1027 |
| HinfI | GANTC | 3 cut(s) | 38, 71, 94 |
| HphI | GGTGA | 3 cut(s) | 301, 353, 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 5 cut(s) | 25, 43, 76, 159, 909 |
| Hpy188III | TCNNGA | 3 cut(s) | 364, 415, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| HpyAV | CCTTC | 4 cut(s) | 112, 569, 613, 961 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 296, 308 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 554, 729 |
| HpyF3I | CTNAG | 4 cut(s) | 105, 447, 629, 920 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92II | CATG | 5 cut(s) | 604, 723, 779, 888, 1027 |
| Ksp22I | TGATCA | 1 cut(s) | 589 |
| Kzo9I | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| LmnI | GCTCC | 1 cut(s) | 633 |
| Lsp1109I | GCAGC | 4 cut(s) | 569, 595, 728, 799 |
| LweI | GCATC | 2 cut(s) | 799, 814 |
| MabI | ACCWGGT | 1 cut(s) | 890 |
| MaeI | CTAG | 2 cut(s) | 327, 990 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MalI | GATC | 6 cut(s) | 156, 453, 488, 591, 646, 918 |
| MboI | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| MboII | GAAGA | 7 cut(s) | 38, 89, 98, 127, 289, 292, 438 |
| MfeI | CAATTG | 1 cut(s) | 651 |
| MflI | RGATCY | 4 cut(s) | 154, 451, 486, 644 |
| MluCI | AATT | 8 cut(s) | 99, 196, 206, 268, 469, 623, 651, 984 |
| MseI | TTAA | 1 cut(s) | 209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1024 |
| MspR9I | CCNGG | 4 cut(s) | 478, 642, 795, 892 |
| MunI | CAATTG | 1 cut(s) | 651 |
| MvaI | CCWGG | 4 cut(s) | 478, 642, 795, 892 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 554, 729 |
| NdeI | CATATG | 1 cut(s) | 853 |
| NdeII | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| NheI | GCTAGC | 1 cut(s) | 326 |
| NlaIII | CATG | 5 cut(s) | 604, 723, 779, 888, 1027 |
| NlaIV | GGNNCC | 4 cut(s) | 488, 646, 692, 896 |
| NspI | RCATGY | 2 cut(s) | 604, 723 |
| NspV | TTCGAA | 1 cut(s) | 1004 |
| PaeI | GCATGC | 1 cut(s) | 723 |
| PceI | AGGCCT | 1 cut(s) | 751 |
| PciI | ACATGT | 1 cut(s) | 600 |
| PfeI | GAWTC | 3 cut(s) | 38, 71, 94 |
| PfoI | TCCNGGA | 3 cut(s) | 476, 640, 793 |
| PkrI | GCNGC | 4 cut(s) | 559, 610, 718, 789 |
| PscI | ACATGT | 1 cut(s) | 600 |
| Psp6I | CCWGG | 4 cut(s) | 476, 640, 793, 890 |
| PspFI | CCCAGC | 1 cut(s) | 973 |
| PspGI | CCWGG | 4 cut(s) | 476, 640, 793, 890 |
| PspN4I | GGNNCC | 4 cut(s) | 488, 646, 692, 896 |
| PspPI | GGNCC | 4 cut(s) | 147, 474, 677, 888 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PsuI | RGATCY | 4 cut(s) | 154, 451, 486, 644 |
| RsaI | GTAC | 2 cut(s) | 512, 704 |
| RsaNI | GTAC | 2 cut(s) | 511, 703 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1024 |
| SaqAI | TTAA | 1 cut(s) | 209 |
| SatI | GCNGC | 4 cut(s) | 558, 609, 717, 788 |
| Sau3AI | GATC | 6 cut(s) | 154, 451, 486, 589, 644, 916 |
| Sau96I | GGNCC | 4 cut(s) | 147, 474, 677, 888 |
| ScrFI | CCNGG | 4 cut(s) | 478, 642, 795, 892 |
| SexAI | ACCWGGT | 1 cut(s) | 890 |
| SfaNI | GCATC | 2 cut(s) | 799, 814 |
| SfcI | CTRYAG | 2 cut(s) | 33, 810 |
| SfuI | TTCGAA | 1 cut(s) | 1004 |
| SinI | GGWCC | 4 cut(s) | 147, 474, 677, 888 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1024 |
| SmlI | CTYRAG | 2 cut(s) | 58, 435 |
| SmoI | CTYRAG | 2 cut(s) | 58, 435 |
| SphI | GCATGC | 1 cut(s) | 723 |
| Sse9I | AATT | 8 cut(s) | 99, 196, 206, 268, 469, 623, 651, 984 |
| SseBI | AGGCCT | 1 cut(s) | 751 |
| SspMI | CTAG | 2 cut(s) | 327, 990 |
| StuI | AGGCCT | 1 cut(s) | 751 |
| StyD4I | CCNGG | 4 cut(s) | 476, 640, 793, 890 |
| StyI | CCWWGG | 2 cut(s) | 137, 336 |
| TaaI | ACNGT | 3 cut(s) | 20, 296, 308 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 1 cut(s) | 1004 |
| TasI | AATT | 8 cut(s) | 99, 196, 206, 268, 469, 623, 651, 984 |
| TatI | WGTACW | 2 cut(s) | 510, 702 |
| TfiI | GAWTC | 3 cut(s) | 38, 71, 94 |
| Tru1I | TTAA | 1 cut(s) | 209 |
| Tru9I | TTAA | 1 cut(s) | 209 |
| TscAI | CASTG | 2 cut(s) | 16, 375 |
| TseI | GCWGC | 4 cut(s) | 557, 608, 716, 787 |
| TspDTI | ATGAA | 5 cut(s) | 99, 584, 588, 1008, 1012 |
| TspGWI | ACGGA | 1 cut(s) | 139 |
| TspRI | CASTG | 2 cut(s) | 16, 375 |
| VpaK11BI | GGWCC | 4 cut(s) | 147, 474, 677, 888 |
| XapI | RAATTY | 2 cut(s) | 196, 268 |
| XceI | RCATGY | 2 cut(s) | 604, 723 |
| XspI | CTAG | 2 cut(s) | 327, 990 |