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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1352 |
| AccB1I | GGYRCC | 1 cut(s) | 1314 |
| AccI | GTMKAC | 1 cut(s) | 817 |
| AciI | CCGC | 1 cut(s) | 312 |
| AclWI | GGATC | 4 cut(s) | 104, 117, 1081, 1660 |
| AcoI | YGGCCR | 1 cut(s) | 1189 |
| AcsI | RAATTY | 1 cut(s) | 1809 |
| AcuI | CTGAAG | 1 cut(s) | 636 |
| AcyI | GRCGYC | 1 cut(s) | 1616 |
| AfaI | GTAC | 1 cut(s) | 1520 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1766 |
| AlwI | GGATC | 4 cut(s) | 104, 117, 1081, 1660 |
| AoxI | GGCC | 3 cut(s) | 362, 722, 1189 |
| ApeKI | GCWGC | 7 cut(s) | 196, 251, 397, 767, 1724, 1752, 1795 |
| ApoI | RAATTY | 1 cut(s) | 1809 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| AsuC2I | CCSGG | 2 cut(s) | 201, 1650 |
| AsuHPI | GGTGA | 3 cut(s) | 575, 1391, 1697 |
| AsuNHI | GCTAGC | 1 cut(s) | 443 |
| BaeGI | GKGCMC | 1 cut(s) | 1319 |
| BalI | TGGCCA | 1 cut(s) | 1191 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| BanI | GGYRCC | 1 cut(s) | 1314 |
| BbvI | GCAGC | 7 cut(s) | 183, 238, 384, 754, 1711, 1739, 1807 |
| BclI | TGATCA | 2 cut(s) | 1474, 1597 |
| BcnI | CCSGG | 2 cut(s) | 201, 1650 |
| BfaI | CTAG | 3 cut(s) | 444, 795, 1526 |
| BfmI | CTRYAG | 3 cut(s) | 252, 1753, 1814 |
| BglII | AGATCT | 1 cut(s) | 1459 |
| BisI | GCNGC | 7 cut(s) | 197, 252, 398, 768, 1725, 1753, 1796 |
| BlsI | GCNGC | 7 cut(s) | 198, 253, 399, 769, 1726, 1754, 1797 |
| Bme1390I | CCNGG | 2 cut(s) | 201, 1650 |
| BmiI | GGNNCC | 3 cut(s) | 111, 1268, 1316 |
| BmrFI | CCNGG | 2 cut(s) | 201, 1650 |
| BmsI | GCATC | 4 cut(s) | 24, 152, 232, 238 |
| BmtI | GCTAGC | 1 cut(s) | 447 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1372, 1404 |
| Bpu10I | CCTNAGC | 1 cut(s) | 825 |
| BpuEI | CTTGAG | 1 cut(s) | 1786 |
| BpuMI | CCSGG | 2 cut(s) | 201, 1650 |
| Bsa29I | ATCGAT | 1 cut(s) | 918 |
| BsaHI | GRCGYC | 1 cut(s) | 1616 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 200, 359 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1766 |
| Bse1I | ACTGG | 2 cut(s) | 313, 1413 |
| Bse3DI | GCAATG | 2 cut(s) | 144, 1569 |
| BseCI | ATCGAT | 1 cut(s) | 918 |
| BseDI | CCNNGG | 3 cut(s) | 13, 200, 359 |
| BseGI | GGATG | 8 cut(s) | 167, 227, 352, 523, 1075, 1477, 1687, 1713 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1766 |
| BseMI | GCAATG | 2 cut(s) | 144, 1569 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseNI | ACTGG | 2 cut(s) | 313, 1413 |
| BseRI | GAGGAG | 2 cut(s) | 1010, 1226 |
| BseSI | GKGCMC | 1 cut(s) | 1319 |
| BseXI | GCAGC | 7 cut(s) | 183, 238, 384, 754, 1711, 1739, 1807 |
| BshFI | GGCC | 3 cut(s) | 364, 724, 1191 |
| BshNI | GGYRCC | 1 cut(s) | 1314 |
| BshVI | ATCGAT | 1 cut(s) | 918 |
| BsiSI | CCGG | 2 cut(s) | 200, 1649 |
| BslFI | GGGAC | 3 cut(s) | 58, 217, 1340 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1766 |
| BsmFI | GGGAC | 3 cut(s) | 58, 217, 1340 |
| BsmI | GAATGC | 1 cut(s) | 652 |
| BsnI | GGCC | 3 cut(s) | 364, 724, 1191 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1319 |
| Bsp143I | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| Bsp19I | CCATGG | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 312 |
| BspANI | GGCC | 3 cut(s) | 364, 724, 1191 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspDI | ATCGAT | 1 cut(s) | 918 |
| BspLI | GGNNCC | 3 cut(s) | 111, 1268, 1316 |
| BspMAI | CTGCAG | 2 cut(s) | 256, 1757 |
| BspOI | GCTAGC | 1 cut(s) | 447 |
| BspPI | GGATC | 4 cut(s) | 104, 117, 1081, 1660 |
| BspT107I | GGYRCC | 1 cut(s) | 1314 |
| BsrDI | GCAATG | 2 cut(s) | 144, 1569 |
| BsrI | ACTGG | 2 cut(s) | 313, 1413 |
| BssECI | CCNNGG | 3 cut(s) | 13, 200, 359 |
| BssMI | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| BssNI | GRCGYC | 1 cut(s) | 1616 |
| BssT1I | CCWWGG | 2 cut(s) | 13, 359 |
| Bst4CI | ACNGT | 3 cut(s) | 1430, 1537, 1546 |
| Bst6I | CTCTTC | 1 cut(s) | 960 |
| BstACI | GRCGYC | 1 cut(s) | 1616 |
| BstC8I | GCNNGC | 4 cut(s) | 402, 445, 1386, 1729 |
| BstDEI | CTNAG | 5 cut(s) | 66, 114, 825, 1217, 1771 |
| BstDSI | CCRYGG | 1 cut(s) | 13 |
| BstF5I | GGATG | 8 cut(s) | 167, 227, 352, 523, 1075, 1477, 1687, 1713 |
| BstKTI | GATC | 6 cut(s) | 112, 1076, 1462, 1477, 1600, 1655 |
| BstMBI | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 2 cut(s) | 199, 1648 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 1753, 1814 |
| BstSLI | GKGCMC | 1 cut(s) | 1319 |
| BstV1I | GCAGC | 7 cut(s) | 183, 238, 384, 754, 1711, 1739, 1807 |
| BstX2I | RGATCY | 3 cut(s) | 109, 1073, 1459 |
| BstYI | RGATCY | 3 cut(s) | 109, 1073, 1459 |
| Bsu15I | ATCGAT | 1 cut(s) | 918 |
| BsuRI | GGCC | 3 cut(s) | 364, 724, 1191 |
| BsuTUI | ATCGAT | 1 cut(s) | 918 |
| BtgI | CCRYGG | 1 cut(s) | 13 |
| BtsCI | GGATG | 8 cut(s) | 167, 227, 352, 523, 1075, 1477, 1687, 1713 |
| BtsIMutI | CAGTG | 3 cut(s) | 306, 1047, 1593 |
| Cac8I | GCNNGC | 4 cut(s) | 402, 445, 1386, 1729 |
| ClaI | ATCGAT | 1 cut(s) | 918 |
| CseI | GACGC | 1 cut(s) | 1605 |
| Csp6I | GTAC | 1 cut(s) | 1519 |
| CviAII | CATG | 8 cut(s) | 14, 126, 150, 392, 466, 683, 1065, 1146 |
| CviQI | GTAC | 1 cut(s) | 1519 |
| DdeI | CTNAG | 5 cut(s) | 66, 114, 825, 1217, 1771 |
| DpnI | GATC | 6 cut(s) | 111, 1075, 1461, 1476, 1599, 1654 |
| DpnII | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1352 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1352 |
| EaeI | YGGCCR | 1 cut(s) | 1189 |
| Eam1104I | CTCTTC | 1 cut(s) | 960 |
| EarI | CTCTTC | 1 cut(s) | 960 |
| Eco130I | CCWWGG | 2 cut(s) | 13, 359 |
| Eco147I | AGGCCT | 2 cut(s) | 364, 724 |
| Eco57I | CTGAAG | 1 cut(s) | 636 |
| EcoT14I | CCWWGG | 2 cut(s) | 13, 359 |
| ErhI | CCWWGG | 2 cut(s) | 13, 359 |
| FaeI | CATG | 8 cut(s) | 17, 129, 153, 395, 469, 686, 1068, 1149 |
| FaqI | GGGAC | 3 cut(s) | 58, 217, 1340 |
| FatI | CATG | 8 cut(s) | 13, 125, 149, 391, 465, 682, 1064, 1145 |
| FbaI | TGATCA | 2 cut(s) | 1474, 1597 |
| FblI | GTMKAC | 1 cut(s) | 817 |
| Fnu4HI | GCNGC | 7 cut(s) | 197, 252, 398, 768, 1725, 1753, 1796 |
| FokI | GGATG | 8 cut(s) | 174, 234, 359, 530, 1082, 1484, 1694, 1720 |
| Fsp4HI | GCNGC | 7 cut(s) | 197, 252, 398, 768, 1725, 1753, 1796 |
| FspBI | CTAG | 3 cut(s) | 444, 795, 1526 |
| GluI | GCNGC | 7 cut(s) | 197, 252, 398, 768, 1725, 1753, 1796 |
| HaeIII | GGCC | 3 cut(s) | 364, 724, 1191 |
| HapII | CCGG | 2 cut(s) | 200, 1649 |
| HgaI | GACGC | 1 cut(s) | 1605 |
| Hin1I | GRCGYC | 1 cut(s) | 1616 |
| Hin1II | CATG | 8 cut(s) | 17, 129, 153, 395, 469, 686, 1068, 1149 |
| HindIII | AAGCTT | 2 cut(s) | 119, 1194 |
| HinfI | GANTC | 6 cut(s) | 87, 226, 388, 881, 1171, 1495 |
| HpaII | CCGG | 2 cut(s) | 200, 1649 |
| HphI | GGTGA | 3 cut(s) | 575, 1391, 1697 |
| Hpy166II | GTNNAC | 1 cut(s) | 818 |
| Hpy188I | TCNGA | 9 cut(s) | 616, 886, 907, 1033, 1078, 1464, 1500, 1626, 1704 |
| Hpy188III | TCNNGA | 2 cut(s) | 113, 1372 |
| Hpy8I | GTNNAC | 1 cut(s) | 818 |
| HpyCH4III | ACNGT | 3 cut(s) | 1430, 1537, 1546 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpyF3I | CTNAG | 5 cut(s) | 66, 114, 825, 1217, 1771 |
| Hsp92I | GRCGYC | 1 cut(s) | 1616 |
| Hsp92II | CATG | 8 cut(s) | 17, 129, 153, 395, 469, 686, 1068, 1149 |
| Ksp22I | TGATCA | 2 cut(s) | 1474, 1597 |
| Kzo9I | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| LmnI | GCTCC | 2 cut(s) | 1213, 1641 |
| Lsp1109I | GCAGC | 7 cut(s) | 183, 238, 384, 754, 1711, 1739, 1807 |
| LweI | GCATC | 4 cut(s) | 24, 152, 232, 238 |
| MaeI | CTAG | 3 cut(s) | 444, 795, 1526 |
| MaeIII | GTNAC | 3 cut(s) | 689, 1397, 1531 |
| MalI | GATC | 6 cut(s) | 111, 1075, 1461, 1476, 1599, 1654 |
| MboI | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| MflI | RGATCY | 3 cut(s) | 109, 1073, 1459 |
| MhlI | GDGCHC | 1 cut(s) | 1319 |
| MlsI | TGGCCA | 1 cut(s) | 1191 |
| MluCI | AATT | 8 cut(s) | 155, 370, 433, 528, 1055, 1137, 1341, 1809 |
| MluNI | TGGCCA | 1 cut(s) | 1191 |
| MlyI | GAGTC | 1 cut(s) | 96 |
| MmeI | TCCRAC | 3 cut(s) | 324, 640, 1721 |
| Mox20I | TGGCCA | 1 cut(s) | 1191 |
| MscI | TGGCCA | 1 cut(s) | 1191 |
| MseI | TTAA | 7 cut(s) | 209, 531, 695, 705, 804, 1140, 1637 |
| Msp20I | TGGCCA | 1 cut(s) | 1191 |
| MspI | CCGG | 2 cut(s) | 200, 1649 |
| MspR9I | CCNGG | 2 cut(s) | 201, 1650 |
| Mva1269I | GAATGC | 1 cut(s) | 652 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NciI | CCSGG | 2 cut(s) | 201, 1650 |
| NcoI | CCATGG | 1 cut(s) | 13 |
| NdeII | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| NheI | GCTAGC | 1 cut(s) | 443 |
| NlaIII | CATG | 8 cut(s) | 17, 129, 153, 395, 469, 686, 1068, 1149 |
| NlaIV | GGNNCC | 3 cut(s) | 111, 1268, 1316 |
| NmuCI | GTSAC | 1 cut(s) | 1397 |
| PceI | AGGCCT | 2 cut(s) | 364, 724 |
| PctI | GAATGC | 1 cut(s) | 652 |
| PfeI | GAWTC | 5 cut(s) | 226, 388, 881, 1171, 1495 |
| PfoI | TCCNGGA | 1 cut(s) | 1648 |
| PkrI | GCNGC | 7 cut(s) | 198, 253, 399, 769, 1726, 1754, 1797 |
| PleI | GAGTC | 1 cut(s) | 95 |
| PpsI | GAGTC | 1 cut(s) | 95 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| PspN4I | GGNNCC | 3 cut(s) | 111, 1268, 1316 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 886, 918 |
| PstI | CTGCAG | 2 cut(s) | 256, 1757 |
| PsuI | RGATCY | 3 cut(s) | 109, 1073, 1459 |
| RsaI | GTAC | 1 cut(s) | 1520 |
| RsaNI | GTAC | 1 cut(s) | 1519 |
| SaqAI | TTAA | 7 cut(s) | 209, 531, 695, 705, 804, 1140, 1637 |
| SatI | GCNGC | 7 cut(s) | 197, 252, 398, 768, 1725, 1753, 1796 |
| Sau3AI | GATC | 6 cut(s) | 109, 1073, 1459, 1474, 1597, 1652 |
| SchI | GAGTC | 1 cut(s) | 96 |
| ScrFI | CCNGG | 2 cut(s) | 201, 1650 |
| SduI | GDGCHC | 1 cut(s) | 1319 |
| SfaNI | GCATC | 4 cut(s) | 24, 152, 232, 238 |
| SfcI | CTRYAG | 3 cut(s) | 252, 1753, 1814 |
| SmlI | CTYRAG | 1 cut(s) | 1801 |
| SmoI | CTYRAG | 1 cut(s) | 1801 |
| Sse9I | AATT | 8 cut(s) | 155, 370, 433, 528, 1055, 1137, 1341, 1809 |
| SseBI | AGGCCT | 2 cut(s) | 364, 724 |
| SsiI | CCGC | 1 cut(s) | 312 |
| SspI | AATATT | 1 cut(s) | 418 |
| SspMI | CTAG | 3 cut(s) | 444, 795, 1526 |
| StuI | AGGCCT | 2 cut(s) | 364, 724 |
| StyD4I | CCNGG | 2 cut(s) | 199, 1648 |
| StyI | CCWWGG | 2 cut(s) | 13, 359 |
| TaaI | ACNGT | 3 cut(s) | 1430, 1537, 1546 |
| TaqI | TCGA | 2 cut(s) | 27, 918 |
| TaqII | GACCGA | 1 cut(s) | 1688 |
| TasI | AATT | 8 cut(s) | 155, 370, 433, 528, 1055, 1137, 1341, 1809 |
| TatI | WGTACW | 1 cut(s) | 1518 |
| TfiI | GAWTC | 5 cut(s) | 226, 388, 881, 1171, 1495 |
| Tru1I | TTAA | 7 cut(s) | 209, 531, 695, 705, 804, 1140, 1637 |
| Tru9I | TTAA | 7 cut(s) | 209, 531, 695, 705, 804, 1140, 1637 |
| TscAI | CASTG | 3 cut(s) | 313, 1054, 1600 |
| TseFI | GTSAC | 1 cut(s) | 1397 |
| TseI | GCWGC | 7 cut(s) | 196, 251, 397, 767, 1724, 1752, 1795 |
| Tsp45I | GTSAC | 1 cut(s) | 1397 |
| TspRI | CASTG | 3 cut(s) | 313, 1054, 1600 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XapI | RAATTY | 1 cut(s) | 1809 |
| XmiI | GTMKAC | 1 cut(s) | 817 |
| XspI | CTAG | 3 cut(s) | 444, 795, 1526 |