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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 41 |
| Acc36I | ACCTGC | 1 cut(s) | 41 |
| AccII | CGCG | 1 cut(s) | 845 |
| AciI | CCGC | 3 cut(s) | 149, 843, 1227 |
| AcsI | RAATTY | 1 cut(s) | 1162 |
| AcuI | CTGAAG | 1 cut(s) | 995 |
| AcvI | CACGTG | 1 cut(s) | 378 |
| AfaI | GTAC | 1 cut(s) | 647 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 26, 247, 471, 553, 1047 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 1 cut(s) | 164 |
| AjnI | CCWGG | 2 cut(s) | 213, 876 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1360 |
| AluBI | AGCT | 6 cut(s) | 35, 92, 181, 259, 785, 1350 |
| AluI | AGCT | 6 cut(s) | 35, 92, 181, 259, 785, 1350 |
| Alw26I | GTCTC | 2 cut(s) | 116, 864 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 785 |
| Ama87I | CYCGRG | 1 cut(s) | 522 |
| AoxI | GGCC | 6 cut(s) | 380, 614, 688, 802, 1020, 1168 |
| ApeKI | GCWGC | 3 cut(s) | 779, 782, 1144 |
| ApoI | RAATTY | 1 cut(s) | 1162 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 836 |
| AspS9I | GGNCC | 3 cut(s) | 381, 869, 1020 |
| AsuHPI | GGTGA | 5 cut(s) | 65, 277, 383, 454, 832 |
| AsuNHI | GCTAGC | 1 cut(s) | 35 |
| AvaI | CYCGRG | 1 cut(s) | 522 |
| AvaII | GGWCC | 1 cut(s) | 869 |
| BaeGI | GKGCMC | 1 cut(s) | 341 |
| BamHI | GGATCC | 2 cut(s) | 151, 318 |
| BanII | GRGCYC | 1 cut(s) | 229 |
| BbrPI | CACGTG | 1 cut(s) | 378 |
| BbvI | GCAGC | 3 cut(s) | 791, 794, 1131 |
| BccI | CCATC | 4 cut(s) | 53, 91, 880, 914 |
| BciT130I | CCWGG | 2 cut(s) | 215, 878 |
| BcoDI | GTCTC | 2 cut(s) | 116, 864 |
| BfaI | CTAG | 5 cut(s) | 36, 156, 260, 660, 791 |
| BfmI | CTRYAG | 1 cut(s) | 434 |
| BfuAI | ACCTGC | 1 cut(s) | 41 |
| BisI | GCNGC | 3 cut(s) | 780, 783, 1145 |
| BlsI | GCNGC | 3 cut(s) | 781, 784, 1146 |
| Bme1390I | CCNGG | 2 cut(s) | 215, 878 |
| Bme18I | GGWCC | 1 cut(s) | 869 |
| BmeT110I | CYCGRG | 1 cut(s) | 522 |
| BmgT120I | GGNCC | 3 cut(s) | 381, 869, 1020 |
| BmiI | GGNNCC | 3 cut(s) | 153, 320, 1130 |
| BmrFI | CCNGG | 2 cut(s) | 215, 878 |
| BmsI | GCATC | 2 cut(s) | 1066, 1273 |
| BmtI | GCTAGC | 1 cut(s) | 39 |
| Bpu10I | CCTNAGC | 1 cut(s) | 323 |
| BpuEI | CTTGAG | 1 cut(s) | 842 |
| BsaAI | YACGTR | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 2 cut(s) | 876, 1023 |
| BsaWI | WCCGGW | 1 cut(s) | 1313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 759, 789 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 26, 247, 471, 553, 1047 |
| Bse1I | ACTGG | 2 cut(s) | 238, 980 |
| BseBI | CCWGG | 2 cut(s) | 215, 878 |
| BseDI | CCNNGG | 2 cut(s) | 876, 1023 |
| BseGI | GGATG | 6 cut(s) | 16, 872, 1033, 1081, 1241, 1288 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 26, 247, 471, 553, 1047 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BseNI | ACTGG | 2 cut(s) | 238, 980 |
| BseRI | GAGGAG | 3 cut(s) | 191, 783, 1136 |
| BseSI | GKGCMC | 1 cut(s) | 341 |
| BseXI | GCAGC | 3 cut(s) | 791, 794, 1131 |
| BseYI | CCCAGC | 2 cut(s) | 547, 941 |
| BsgI | GTGCAG | 2 cut(s) | 221, 1320 |
| Bsh1236I | CGCG | 1 cut(s) | 845 |
| BshFI | GGCC | 6 cut(s) | 382, 616, 690, 804, 1022, 1170 |
| BsiHKCI | CYCGRG | 1 cut(s) | 522 |
| BsiSI | CCGG | 1 cut(s) | 1314 |
| BslFI | GGGAC | 2 cut(s) | 587, 1273 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 26, 247, 471, 553, 1047 |
| BsmAI | GTCTC | 2 cut(s) | 116, 864 |
| BsmBI | CGTCTC | 1 cut(s) | 864 |
| BsmFI | GGGAC | 2 cut(s) | 587, 1273 |
| BsmI | GAATGC | 1 cut(s) | 903 |
| BsnI | GGCC | 6 cut(s) | 382, 616, 690, 804, 1022, 1170 |
| BsoBI | CYCGRG | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 2 cut(s) | 229, 341 |
| BspACI | CCGC | 3 cut(s) | 149, 843, 1227 |
| BspANI | GGCC | 6 cut(s) | 382, 616, 690, 804, 1022, 1170 |
| BspCNI | CTCAG | 1 cut(s) | 85 |
| BspFNI | CGCG | 1 cut(s) | 845 |
| BspLI | GGNNCC | 3 cut(s) | 153, 320, 1130 |
| BspMAI | CTGCAG | 1 cut(s) | 438 |
| BspMI | ACCTGC | 1 cut(s) | 41 |
| BspOI | GCTAGC | 1 cut(s) | 39 |
| BsrI | ACTGG | 2 cut(s) | 238, 980 |
| BssECI | CCNNGG | 2 cut(s) | 876, 1023 |
| BssT1I | CCWWGG | 1 cut(s) | 1023 |
| Bst2UI | CCWGG | 2 cut(s) | 215, 878 |
| Bst4CI | ACNGT | 6 cut(s) | 24, 127, 144, 888, 916, 952 |
| Bst6I | CTCTTC | 5 cut(s) | 263, 413, 512, 603, 624 |
| BstBAI | YACGTR | 1 cut(s) | 378 |
| BstC8I | GCNNGC | 4 cut(s) | 37, 112, 477, 985 |
| BstDEI | CTNAG | 2 cut(s) | 93, 323 |
| BstF5I | GGATG | 6 cut(s) | 16, 872, 1033, 1081, 1241, 1288 |
| BstFNI | CGCG | 1 cut(s) | 845 |
| BstMAI | GTCTC | 2 cut(s) | 116, 864 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 224, 557, 791 |
| BstNI | CCWGG | 2 cut(s) | 215, 878 |
| BstSCI | CCNGG | 2 cut(s) | 213, 876 |
| BstSFI | CTRYAG | 1 cut(s) | 434 |
| BstSLI | GKGCMC | 1 cut(s) | 341 |
| BstUI | CGCG | 1 cut(s) | 845 |
| BstV1I | GCAGC | 3 cut(s) | 791, 794, 1131 |
| BstX2I | RGATCY | 5 cut(s) | 151, 318, 495, 577, 1052 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstYI | RGATCY | 5 cut(s) | 151, 318, 495, 577, 1052 |
| BsuRI | GGCC | 6 cut(s) | 382, 616, 690, 804, 1022, 1170 |
| BtsCI | GGATG | 6 cut(s) | 16, 872, 1033, 1081, 1241, 1288 |
| BtsI | GCAGTG | 2 cut(s) | 1293, 1308 |
| BtsIMutI | CAGTG | 3 cut(s) | 20, 1293, 1308 |
| BveI | ACCTGC | 1 cut(s) | 41 |
| Cac8I | GCNNGC | 4 cut(s) | 37, 112, 477, 985 |
| CaiI | CAGNNNCTG | 1 cut(s) | 785 |
| Cfr13I | GGNCC | 3 cut(s) | 381, 869, 1020 |
| CseI | GACGC | 2 cut(s) | 103, 834 |
| Csp6I | GTAC | 1 cut(s) | 646 |
| CviAII | CATG | 7 cut(s) | 77, 402, 552, 643, 704, 1272, 1295 |
| CviQI | GTAC | 1 cut(s) | 646 |
| DdeI | CTNAG | 2 cut(s) | 93, 323 |
| Eam1104I | CTCTTC | 5 cut(s) | 263, 413, 512, 603, 624 |
| EarI | CTCTTC | 5 cut(s) | 263, 413, 512, 603, 624 |
| EciI | GGCGGA | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 1 cut(s) | 1023 |
| Eco147I | AGGCCT | 3 cut(s) | 616, 690, 1170 |
| Eco24I | GRGCYC | 1 cut(s) | 229 |
| Eco32I | GATATC | 1 cut(s) | 569 |
| Eco47I | GGWCC | 1 cut(s) | 869 |
| Eco57I | CTGAAG | 1 cut(s) | 995 |
| Eco72I | CACGTG | 1 cut(s) | 378 |
| Eco88I | CYCGRG | 1 cut(s) | 522 |
| EcoRII | CCWGG | 2 cut(s) | 213, 876 |
| EcoRV | GATATC | 1 cut(s) | 569 |
| EcoT14I | CCWWGG | 1 cut(s) | 1023 |
| EcoT38I | GRGCYC | 1 cut(s) | 229 |
| ErhI | CCWWGG | 1 cut(s) | 1023 |
| Esp3I | CGTCTC | 1 cut(s) | 864 |
| FaeI | CATG | 7 cut(s) | 80, 405, 555, 646, 707, 1275, 1298 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1025, 1057, 1360 |
| FaqI | GGGAC | 2 cut(s) | 587, 1273 |
| FatI | CATG | 7 cut(s) | 76, 401, 551, 642, 703, 1271, 1294 |
| Fnu4HI | GCNGC | 3 cut(s) | 780, 783, 1145 |
| FokI | GGATG | 6 cut(s) | 3, 859, 1040, 1088, 1248, 1295 |
| FriOI | GRGCYC | 1 cut(s) | 229 |
| Fsp4HI | GCNGC | 3 cut(s) | 780, 783, 1145 |
| FspBI | CTAG | 5 cut(s) | 36, 156, 260, 660, 791 |
| GluI | GCNGC | 3 cut(s) | 780, 783, 1145 |
| GsaI | CCCAGC | 2 cut(s) | 551, 945 |
| HaeIII | GGCC | 6 cut(s) | 382, 616, 690, 804, 1022, 1170 |
| HapII | CCGG | 1 cut(s) | 1314 |
| HgaI | GACGC | 2 cut(s) | 103, 834 |
| Hin1II | CATG | 7 cut(s) | 80, 405, 555, 646, 707, 1275, 1298 |
| HincII | GTYRAC | 2 cut(s) | 948, 973 |
| HindII | GTYRAC | 2 cut(s) | 948, 973 |
| HpaI | GTTAAC | 1 cut(s) | 973 |
| HpaII | CCGG | 1 cut(s) | 1314 |
| HphI | GGTGA | 5 cut(s) | 65, 277, 383, 454, 832 |
| Hpy166II | GTNNAC | 4 cut(s) | 391, 948, 973, 1180 |
| Hpy188I | TCNGA | 3 cut(s) | 850, 1057, 1204 |
| Hpy188III | TCNNGA | 8 cut(s) | 186, 493, 668, 821, 863, 897, 1013, 1068 |
| Hpy8I | GTNNAC | 4 cut(s) | 391, 948, 973, 1180 |
| Hpy99I | CGWCG | 1 cut(s) | 850 |
| HpyAV | CCTTC | 9 cut(s) | 57, 158, 166, 217, 394, 674, 860, 1051, 1355 |
| HpyCH4III | ACNGT | 6 cut(s) | 24, 127, 144, 888, 916, 952 |
| HpyCH4IV | ACGT | 3 cut(s) | 377, 489, 1062 |
| HpyCH4V | TGCA | 9 cut(s) | 202, 254, 436, 779, 987, 1175, 1286, 1301, 1320 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 224, 557, 791 |
| HpyF3I | CTNAG | 2 cut(s) | 93, 323 |
| HpySE526I | ACGT | 3 cut(s) | 377, 489, 1062 |
| Hsp92II | CATG | 7 cut(s) | 80, 405, 555, 646, 707, 1275, 1298 |
| KspAI | GTTAAC | 1 cut(s) | 973 |
| LmnI | GCTCC | 2 cut(s) | 32, 178 |
| Lsp1109I | GCAGC | 3 cut(s) | 791, 794, 1131 |
| LweI | GCATC | 2 cut(s) | 1066, 1273 |
| MaeI | CTAG | 5 cut(s) | 36, 156, 260, 660, 791 |
| MaeII | ACGT | 3 cut(s) | 377, 489, 1062 |
| MaeIII | GTNAC | 3 cut(s) | 371, 697, 1099 |
| MflI | RGATCY | 5 cut(s) | 151, 318, 495, 577, 1052 |
| MhlI | GDGCHC | 2 cut(s) | 229, 341 |
| MluCI | AATT | 4 cut(s) | 279, 747, 1162, 1195 |
| MlyI | GAGTC | 3 cut(s) | 609, 701, 995 |
| MmeI | TCCRAC | 1 cut(s) | 828 |
| MroXI | GAANNNNTTC | 1 cut(s) | 836 |
| MseI | TTAA | 2 cut(s) | 278, 972 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1215 |
| MspA1I | CMGCKG | 2 cut(s) | 92, 785 |
| MspI | CCGG | 1 cut(s) | 1314 |
| MspR9I | CCNGG | 2 cut(s) | 215, 878 |
| Mva1269I | GAATGC | 1 cut(s) | 903 |
| MvaI | CCWGG | 2 cut(s) | 215, 878 |
| MvnI | CGCG | 1 cut(s) | 845 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 224, 557, 791 |
| NheI | GCTAGC | 1 cut(s) | 35 |
| NlaIII | CATG | 7 cut(s) | 80, 405, 555, 646, 707, 1275, 1298 |
| NlaIV | GGNNCC | 3 cut(s) | 153, 320, 1130 |
| NmeAIII | GCCGAG | 2 cut(s) | 610, 1351 |
| NmuCI | GTSAC | 2 cut(s) | 371, 697 |
| PaqCI | CACCTGC | 1 cut(s) | 41 |
| PceI | AGGCCT | 3 cut(s) | 616, 690, 1170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 854 |
| PctI | GAATGC | 1 cut(s) | 903 |
| PdmI | GAANNNNTTC | 1 cut(s) | 836 |
| PfeI | GAWTC | 7 cut(s) | 237, 630, 671, 893, 934, 1092, 1265 |
| PkrI | GCNGC | 3 cut(s) | 781, 784, 1146 |
| PleI | GAGTC | 3 cut(s) | 608, 701, 995 |
| PmaCI | CACGTG | 1 cut(s) | 378 |
| PmlI | CACGTG | 1 cut(s) | 378 |
| PpsI | GAGTC | 3 cut(s) | 608, 701, 995 |
| Ppu21I | YACGTR | 1 cut(s) | 378 |
| Psp6I | CCWGG | 2 cut(s) | 213, 876 |
| PspCI | CACGTG | 1 cut(s) | 378 |
| PspFI | CCCAGC | 2 cut(s) | 547, 941 |
| PspGI | CCWGG | 2 cut(s) | 213, 876 |
| PspN4I | GGNNCC | 3 cut(s) | 153, 320, 1130 |
| PspPI | GGNCC | 3 cut(s) | 381, 869, 1020 |
| PstI | CTGCAG | 1 cut(s) | 438 |
| PstNI | CAGNNNCTG | 1 cut(s) | 785 |
| PsuI | RGATCY | 5 cut(s) | 151, 318, 495, 577, 1052 |
| PvuII | CAGCTG | 2 cut(s) | 92, 785 |
| RsaI | GTAC | 1 cut(s) | 647 |
| RsaNI | GTAC | 1 cut(s) | 646 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1215 |
| SaqAI | TTAA | 2 cut(s) | 278, 972 |
| SatI | GCNGC | 3 cut(s) | 780, 783, 1145 |
| Sau96I | GGNCC | 3 cut(s) | 381, 869, 1020 |
| SchI | GAGTC | 3 cut(s) | 609, 701, 995 |
| ScrFI | CCNGG | 2 cut(s) | 215, 878 |
| SduI | GDGCHC | 2 cut(s) | 229, 341 |
| SfaNI | GCATC | 2 cut(s) | 1066, 1273 |
| SfcI | CTRYAG | 1 cut(s) | 434 |
| SinI | GGWCC | 1 cut(s) | 869 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1215 |
| SmlI | CTYRAG | 1 cut(s) | 821 |
| SmoI | CTYRAG | 1 cut(s) | 821 |
| Sse9I | AATT | 4 cut(s) | 279, 747, 1162, 1195 |
| SseBI | AGGCCT | 3 cut(s) | 616, 690, 1170 |
| SsiI | CCGC | 3 cut(s) | 149, 843, 1227 |
| SspMI | CTAG | 5 cut(s) | 36, 156, 260, 660, 791 |
| StuI | AGGCCT | 3 cut(s) | 616, 690, 1170 |
| StyD4I | CCNGG | 2 cut(s) | 213, 876 |
| StyI | CCWWGG | 1 cut(s) | 1023 |
| TaaI | ACNGT | 6 cut(s) | 24, 127, 144, 888, 916, 952 |
| TaiI | ACGT | 3 cut(s) | 380, 492, 1065 |
| TasI | AATT | 4 cut(s) | 279, 747, 1162, 1195 |
| TfiI | GAWTC | 7 cut(s) | 237, 630, 671, 893, 934, 1092, 1265 |
| Tru1I | TTAA | 2 cut(s) | 278, 972 |
| Tru9I | TTAA | 2 cut(s) | 278, 972 |
| TscAI | CASTG | 3 cut(s) | 27, 1293, 1308 |
| TseFI | GTSAC | 2 cut(s) | 371, 697 |
| TseI | GCWGC | 3 cut(s) | 779, 782, 1144 |
| Tsp45I | GTSAC | 2 cut(s) | 371, 697 |
| TspDTI | ATGAA | 4 cut(s) | 499, 546, 906, 1044 |
| TspRI | CASTG | 3 cut(s) | 27, 1293, 1308 |
| VpaK11BI | GGWCC | 1 cut(s) | 869 |
| XapI | RAATTY | 1 cut(s) | 1162 |
| XmnI | GAANNNNTTC | 1 cut(s) | 836 |
| XspI | CTAG | 5 cut(s) | 36, 156, 260, 660, 791 |