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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 804 |
| AccIII | TCCGGA | 1 cut(s) | 2347 |
| AciI | CCGC | 2 cut(s) | 579, 2281 |
| AclWI | GGATC | 9 cut(s) | 422, 523, 695, 1091, 1296, 1309, 1355, 2339, 2447 |
| AcsI | RAATTY | 3 cut(s) | 860, 1121, 2298 |
| AcuI | CTGAAG | 3 cut(s) | 1334, 2186, 2469 |
| AdeI | CACNNNGTG | 1 cut(s) | 205 |
| AfaI | GTAC | 5 cut(s) | 179, 316, 725, 1151, 2272 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 311, 736 |
| AflII | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| AflIII | ACRYGT | 3 cut(s) | 852, 1764, 2267 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AleI | CACNNNNGTG | 1 cut(s) | 1961 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 965, 997, 2437, 2469 |
| Alw21I | GWGCWC | 4 cut(s) | 1076, 1115, 1504, 1741 |
| Alw26I | GTCTC | 2 cut(s) | 344, 1709 |
| Alw44I | GTGCAC | 2 cut(s) | 1111, 1500 |
| AlwI | GGATC | 9 cut(s) | 422, 523, 695, 1091, 1296, 1309, 1355, 2339, 2447 |
| Aor13HI | TCCGGA | 1 cut(s) | 2347 |
| AoxI | GGCC | 4 cut(s) | 382, 1269, 1878, 1922 |
| ApaLI | GTGCAC | 2 cut(s) | 1111, 1500 |
| ApeKI | GCWGC | 7 cut(s) | 260, 547, 1063, 1280, 1515, 2171, 2363 |
| ApoI | RAATTY | 3 cut(s) | 860, 1121, 2298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 804 |
| AspS9I | GGNCC | 5 cut(s) | 184, 389, 1269, 1677, 1879 |
| AsuC2I | CCSGG | 1 cut(s) | 1794 |
| AsuHPI | GGTGA | 5 cut(s) | 98, 704, 1585, 1813, 2216 |
| AsuNHI | GCTAGC | 1 cut(s) | 1229 |
| AvaII | GGWCC | 3 cut(s) | 184, 389, 1677 |
| BaeGI | GKGCMC | 2 cut(s) | 1115, 1504 |
| BamHI | GGATCC | 1 cut(s) | 1301 |
| BanII | GRGCYC | 2 cut(s) | 1450, 1741 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 230, 262, 2369, 2401 |
| BbsI | GAAGAC | 3 cut(s) | 249, 575, 2387 |
| Bbv12I | GWGCWC | 4 cut(s) | 1076, 1115, 1504, 1741 |
| BbvCI | CCTCAGC | 1 cut(s) | 2214 |
| BbvI | GCAGC | 7 cut(s) | 272, 559, 1075, 1267, 1502, 2158, 2375 |
| BccI | CCATC | 6 cut(s) | 677, 1075, 1372, 1490, 1668, 1858 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BclI | TGATCA | 3 cut(s) | 135, 168, 279 |
| BcnI | CCSGG | 1 cut(s) | 1794 |
| BcoDI | GTCTC | 2 cut(s) | 344, 1709 |
| BfaI | CTAG | 5 cut(s) | 501, 797, 1211, 1230, 1628 |
| BfrI | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| BfuAI | ACCTGC | 1 cut(s) | 804 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1277 |
| BisI | GCNGC | 7 cut(s) | 261, 548, 1064, 1281, 1516, 2172, 2364 |
| BlsI | GCNGC | 7 cut(s) | 262, 549, 1065, 1282, 1517, 2173, 2365 |
| Bme1390I | CCNGG | 2 cut(s) | 312, 1794 |
| Bme18I | GGWCC | 3 cut(s) | 184, 389, 1677 |
| BmgT120I | GGNCC | 5 cut(s) | 184, 389, 1269, 1677, 1879 |
| BmiI | GGNNCC | 2 cut(s) | 1303, 1625 |
| BmrFI | CCNGG | 2 cut(s) | 312, 1794 |
| BmsI | GCATC | 3 cut(s) | 928, 1543, 1882 |
| BmtI | GCTAGC | 1 cut(s) | 1233 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1032 |
| BpiI | GAAGAC | 3 cut(s) | 249, 575, 2387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2214 |
| BpuEI | CTTGAG | 1 cut(s) | 348 |
| BpuMI | CCSGG | 1 cut(s) | 1794 |
| Bsa29I | ATCGAT | 1 cut(s) | 1551 |
| BsaBI | GATNNNNATC | 1 cut(s) | 699 |
| BsaI | GGTCTC | 1 cut(s) | 1709 |
| BsaJI | CCNNGG | 3 cut(s) | 385, 2116, 2138 |
| BsaWI | WCCGGW | 1 cut(s) | 2347 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 311, 736 |
| Bse1I | ACTGG | 4 cut(s) | 77, 1100, 1415, 2039 |
| Bse3DI | GCAATG | 2 cut(s) | 2094, 2208 |
| Bse8I | GATNNNNATC | 1 cut(s) | 699 |
| BseAI | TCCGGA | 1 cut(s) | 2347 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseCI | ATCGAT | 1 cut(s) | 1551 |
| BseDI | CCNNGG | 3 cut(s) | 385, 2116, 2138 |
| BseJI | GATNNNNATC | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 311, 736 |
| BseMI | GCAATG | 2 cut(s) | 2094, 2208 |
| BseMII | CTCAG | 3 cut(s) | 278, 1319, 2205 |
| BseNI | ACTGG | 4 cut(s) | 77, 1100, 1415, 2039 |
| BseRI | GAGGAG | 2 cut(s) | 362, 734 |
| BseSI | GKGCMC | 2 cut(s) | 1115, 1504 |
| BseXI | GCAGC | 7 cut(s) | 272, 559, 1075, 1267, 1502, 2158, 2375 |
| BsgI | GTGCAG | 3 cut(s) | 729, 1266, 1960 |
| BshFI | GGCC | 4 cut(s) | 384, 1271, 1880, 1924 |
| BshVI | ATCGAT | 1 cut(s) | 1551 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1076, 1115, 1504, 1741 |
| BsiSI | CCGG | 3 cut(s) | 1759, 1794, 2348 |
| BslFI | GGGAC | 2 cut(s) | 796, 2300 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 311, 736 |
| BsmAI | GTCTC | 2 cut(s) | 344, 1709 |
| BsmFI | GGGAC | 2 cut(s) | 796, 2300 |
| BsmI | GAATGC | 1 cut(s) | 659 |
| BsnI | GGCC | 4 cut(s) | 384, 1271, 1880, 1924 |
| Bso31I | GGTCTC | 1 cut(s) | 1709 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1076, 1115, 1450, 1504, 1741 |
| Bsp13I | TCCGGA | 1 cut(s) | 2347 |
| Bsp19I | CCATGG | 1 cut(s) | 2116 |
| BspACI | CCGC | 2 cut(s) | 579, 2281 |
| BspANI | GGCC | 4 cut(s) | 384, 1271, 1880, 1924 |
| BspCNI | CTCAG | 3 cut(s) | 277, 1320, 2206 |
| BspDI | ATCGAT | 1 cut(s) | 1551 |
| BspEI | TCCGGA | 1 cut(s) | 2347 |
| BspHI | TCATGA | 2 cut(s) | 330, 1977 |
| BspLI | GGNNCC | 2 cut(s) | 1303, 1625 |
| BspMI | ACCTGC | 1 cut(s) | 804 |
| BspOI | GCTAGC | 1 cut(s) | 1233 |
| BspPI | GGATC | 9 cut(s) | 422, 523, 695, 1091, 1296, 1309, 1355, 2339, 2447 |
| BspTI | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| BspTNI | GGTCTC | 1 cut(s) | 1709 |
| BsrDI | GCAATG | 2 cut(s) | 2094, 2208 |
| BsrI | ACTGG | 4 cut(s) | 77, 1100, 1415, 2039 |
| BssECI | CCNNGG | 3 cut(s) | 385, 2116, 2138 |
| BssT1I | CCWWGG | 3 cut(s) | 385, 2116, 2138 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 6 cut(s) | 159, 480, 677, 1034, 1483, 1970 |
| Bst6I | CTCTTC | 7 cut(s) | 282, 825, 840, 1336, 1663, 2049, 2072 |
| BstAFI | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| BstC8I | GCNNGC | 9 cut(s) | 370, 552, 954, 1054, 1231, 1926, 2279, 2309, 2368 |
| BstDEI | CTNAG | 5 cut(s) | 264, 932, 1328, 1492, 2214 |
| BstDSI | CCRYGG | 1 cut(s) | 2116 |
| BstMAI | GTCTC | 2 cut(s) | 344, 1709 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1268, 1277 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 7 cut(s) | 468, 856, 956, 1768, 2271, 2315, 2370 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1032 |
| BstSCI | CCNGG | 2 cut(s) | 310, 1792 |
| BstSLI | GKGCMC | 2 cut(s) | 1115, 1504 |
| BstV1I | GCAGC | 7 cut(s) | 272, 559, 1075, 1267, 1502, 2158, 2375 |
| BstV2I | GAAGAC | 3 cut(s) | 249, 575, 2387 |
| BstX2I | RGATCY | 3 cut(s) | 515, 1301, 2452 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1258 |
| BstYI | RGATCY | 3 cut(s) | 515, 1301, 2452 |
| Bsu15I | ATCGAT | 1 cut(s) | 1551 |
| BsuRI | GGCC | 4 cut(s) | 384, 1271, 1880, 1924 |
| BsuTUI | ATCGAT | 1 cut(s) | 1551 |
| BtgI | CCRYGG | 1 cut(s) | 2116 |
| BtgZI | GCGATG | 1 cut(s) | 906 |
| BtsI | GCAGTG | 1 cut(s) | 664 |
| BtsIMutI | CAGTG | 4 cut(s) | 164, 664, 682, 2046 |
| BveI | ACCTGC | 1 cut(s) | 804 |
| Cac8I | GCNNGC | 9 cut(s) | 370, 552, 954, 1054, 1231, 1926, 2279, 2309, 2368 |
| CciI | TCATGA | 2 cut(s) | 330, 1977 |
| Cfr13I | GGNCC | 5 cut(s) | 184, 389, 1269, 1677, 1879 |
| ClaI | ATCGAT | 1 cut(s) | 1551 |
| CsiI | ACCWGGT | 1 cut(s) | 310 |
| Csp6I | GTAC | 5 cut(s) | 178, 315, 724, 1150, 2271 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1357, 1392 |
| CviQI | GTAC | 5 cut(s) | 178, 315, 724, 1150, 2271 |
| DdeI | CTNAG | 5 cut(s) | 264, 932, 1328, 1492, 2214 |
| DraI | TTTAAA | 2 cut(s) | 1168, 1423 |
| DraIII | CACNNNGTG | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 7 cut(s) | 282, 825, 840, 1336, 1663, 2049, 2072 |
| EarI | CTCTTC | 7 cut(s) | 282, 825, 840, 1336, 1663, 2049, 2072 |
| Ecl136II | GAGCTC | 1 cut(s) | 1739 |
| Eco130I | CCWWGG | 3 cut(s) | 385, 2116, 2138 |
| Eco147I | AGGCCT | 1 cut(s) | 1924 |
| Eco24I | GRGCYC | 2 cut(s) | 1450, 1741 |
| Eco31I | GGTCTC | 1 cut(s) | 1709 |
| Eco47I | GGWCC | 3 cut(s) | 184, 389, 1677 |
| Eco53kI | GAGCTC | 1 cut(s) | 1739 |
| Eco57I | CTGAAG | 3 cut(s) | 1334, 2186, 2469 |
| EcoICRI | GAGCTC | 1 cut(s) | 1739 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1879 |
| EcoRI | GAATTC | 2 cut(s) | 860, 2298 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 3 cut(s) | 385, 2116, 2138 |
| EcoT22I | ATGCAT | 1 cut(s) | 1897 |
| EcoT38I | GRGCYC | 2 cut(s) | 1450, 1741 |
| ErhI | CCWWGG | 3 cut(s) | 385, 2116, 2138 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1445, 1477, 1502, 1534 |
| FaqI | GGGAC | 2 cut(s) | 796, 2300 |
| FauNDI | CATATG | 2 cut(s) | 189, 1582 |
| FbaI | TGATCA | 3 cut(s) | 135, 168, 279 |
| Fnu4HI | GCNGC | 7 cut(s) | 261, 548, 1064, 1281, 1516, 2172, 2364 |
| FriOI | GRGCYC | 2 cut(s) | 1450, 1741 |
| Fsp4HI | GCNGC | 7 cut(s) | 261, 548, 1064, 1281, 1516, 2172, 2364 |
| FspBI | CTAG | 5 cut(s) | 501, 797, 1211, 1230, 1628 |
| GluI | GCNGC | 7 cut(s) | 261, 548, 1064, 1281, 1516, 2172, 2364 |
| HaeIII | GGCC | 4 cut(s) | 384, 1271, 1880, 1924 |
| HapII | CCGG | 3 cut(s) | 1759, 1794, 2348 |
| HincII | GTYRAC | 1 cut(s) | 1536 |
| HindII | GTYRAC | 1 cut(s) | 1536 |
| HinfI | GANTC | 8 cut(s) | 122, 299, 327, 800, 886, 928, 1205, 1610 |
| HpaII | CCGG | 3 cut(s) | 1759, 1794, 2348 |
| HphI | GGTGA | 5 cut(s) | 98, 704, 1585, 1813, 2216 |
| Hpy188I | TCNGA | 8 cut(s) | 127, 267, 1353, 1645, 1650, 1748, 1815, 1857 |
| Hpy188III | TCNNGA | 7 cut(s) | 331, 587, 1889, 1978, 2295, 2348, 2442 |
| HpyAV | CCTTC | 9 cut(s) | 566, 773, 1292, 1421, 1658, 1690, 1852, 1870, 2161 |
| HpyCH4III | ACNGT | 6 cut(s) | 159, 480, 677, 1034, 1483, 1970 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1268, 1277 |
| HpyF3I | CTNAG | 5 cut(s) | 264, 932, 1328, 1492, 2214 |
| Kpn2I | TCCGGA | 1 cut(s) | 2347 |
| Ksp22I | TGATCA | 3 cut(s) | 135, 168, 279 |
| LmnI | GCTCC | 1 cut(s) | 949 |
| Lsp1109I | GCAGC | 7 cut(s) | 272, 559, 1075, 1267, 1502, 2158, 2375 |
| LweI | GCATC | 3 cut(s) | 928, 1543, 1882 |
| MabI | ACCWGGT | 1 cut(s) | 310 |
| MaeI | CTAG | 5 cut(s) | 501, 797, 1211, 1230, 1628 |
| MaeIII | GTNAC | 4 cut(s) | 291, 1970, 2041, 2204 |
| MfeI | CAATTG | 2 cut(s) | 1374, 1529 |
| MflI | RGATCY | 3 cut(s) | 515, 1301, 2452 |
| MhlI | GDGCHC | 5 cut(s) | 1076, 1115, 1450, 1504, 1741 |
| MluCI | AATT | 7 cut(s) | 63, 860, 1121, 1176, 1374, 1529, 2298 |
| MmeI | TCCRAC | 3 cut(s) | 93, 1991, 2437 |
| Mph1103I | ATGCAT | 1 cut(s) | 1897 |
| MroI | TCCGGA | 1 cut(s) | 2347 |
| MroXI | GAANNNNTTC | 1 cut(s) | 804 |
| MslI | CAYNNNNRTG | 5 cut(s) | 233, 1079, 1618, 1900, 1961 |
| MspA1I | CMGCKG | 1 cut(s) | 1541 |
| MspCI | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| MspI | CCGG | 3 cut(s) | 1759, 1794, 2348 |
| MspR9I | CCNGG | 2 cut(s) | 312, 1794 |
| MunI | CAATTG | 2 cut(s) | 1374, 1529 |
| Mva1269I | GAATGC | 1 cut(s) | 659 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1268, 1277 |
| NciI | CCSGG | 1 cut(s) | 1794 |
| NcoI | CCATGG | 1 cut(s) | 2116 |
| NdeI | CATATG | 2 cut(s) | 189, 1582 |
| NheI | GCTAGC | 1 cut(s) | 1229 |
| NlaIV | GGNNCC | 2 cut(s) | 1303, 1625 |
| NmuCI | GTSAC | 3 cut(s) | 1970, 2041, 2204 |
| NsiI | ATGCAT | 1 cut(s) | 1897 |
| NspI | RCATGY | 7 cut(s) | 468, 856, 956, 1768, 2271, 2315, 2370 |
| OliI | CACNNNNGTG | 1 cut(s) | 1961 |
| PaeI | GCATGC | 2 cut(s) | 956, 2370 |
| PagI | TCATGA | 2 cut(s) | 330, 1977 |
| PceI | AGGCCT | 1 cut(s) | 1924 |
| PciI | ACATGT | 3 cut(s) | 852, 1764, 2267 |
| PctI | GAATGC | 1 cut(s) | 659 |
| PdmI | GAANNNNTTC | 1 cut(s) | 804 |
| PfeI | GAWTC | 8 cut(s) | 122, 299, 327, 800, 886, 928, 1205, 1610 |
| PflFI | GACNNNGTC | 1 cut(s) | 1222 |
| PfoI | TCCNGGA | 1 cut(s) | 1792 |
| PkrI | GCNGC | 7 cut(s) | 262, 549, 1065, 1282, 1517, 2173, 2365 |
| PscI | ACATGT | 3 cut(s) | 852, 1764, 2267 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1032 |
| Psp124BI | GAGCTC | 1 cut(s) | 1741 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 2 cut(s) | 1303, 1625 |
| PspPI | GGNCC | 5 cut(s) | 184, 389, 1269, 1677, 1879 |
| PsuI | RGATCY | 3 cut(s) | 515, 1301, 2452 |
| PsyI | GACNNNGTC | 1 cut(s) | 1222 |
| PvuII | CAGCTG | 1 cut(s) | 1541 |
| RsaI | GTAC | 5 cut(s) | 179, 316, 725, 1151, 2272 |
| RsaNI | GTAC | 5 cut(s) | 178, 315, 724, 1150, 2271 |
| RseI | CAYNNNNRTG | 5 cut(s) | 233, 1079, 1618, 1900, 1961 |
| SacI | GAGCTC | 1 cut(s) | 1741 |
| SatI | GCNGC | 7 cut(s) | 261, 548, 1064, 1281, 1516, 2172, 2364 |
| Sau96I | GGNCC | 5 cut(s) | 184, 389, 1269, 1677, 1879 |
| ScrFI | CCNGG | 2 cut(s) | 312, 1794 |
| SduI | GDGCHC | 5 cut(s) | 1076, 1115, 1450, 1504, 1741 |
| SexAI | ACCWGGT | 1 cut(s) | 310 |
| SfaNI | GCATC | 3 cut(s) | 928, 1543, 1882 |
| SinI | GGWCC | 3 cut(s) | 184, 389, 1677 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 233, 1079, 1618, 1900, 1961 |
| SmlI | CTYRAG | 4 cut(s) | 363, 943, 1451, 2254 |
| SmoI | CTYRAG | 4 cut(s) | 363, 943, 1451, 2254 |
| SphI | GCATGC | 2 cut(s) | 956, 2370 |
| Sse9I | AATT | 7 cut(s) | 63, 860, 1121, 1176, 1374, 1529, 2298 |
| SseBI | AGGCCT | 1 cut(s) | 1924 |
| SsiI | CCGC | 2 cut(s) | 579, 2281 |
| SspMI | CTAG | 5 cut(s) | 501, 797, 1211, 1230, 1628 |
| SstI | GAGCTC | 1 cut(s) | 1741 |
| StuI | AGGCCT | 1 cut(s) | 1924 |
| StyD4I | CCNGG | 2 cut(s) | 310, 1792 |
| StyI | CCWWGG | 3 cut(s) | 385, 2116, 2138 |
| TaaI | ACNGT | 6 cut(s) | 159, 480, 677, 1034, 1483, 1970 |
| TaqI | TCGA | 3 cut(s) | 741, 1551, 2237 |
| TasI | AATT | 7 cut(s) | 63, 860, 1121, 1176, 1374, 1529, 2298 |
| TatI | WGTACW | 2 cut(s) | 177, 2270 |
| TfiI | GAWTC | 8 cut(s) | 122, 299, 327, 800, 886, 928, 1205, 1610 |
| TscAI | CASTG | 4 cut(s) | 164, 664, 682, 2046 |
| TseFI | GTSAC | 3 cut(s) | 1970, 2041, 2204 |
| TseI | GCWGC | 7 cut(s) | 260, 547, 1063, 1280, 1515, 2171, 2363 |
| Tsp45I | GTSAC | 3 cut(s) | 1970, 2041, 2204 |
| TspGWI | ACGGA | 1 cut(s) | 2460 |
| TspRI | CASTG | 4 cut(s) | 164, 664, 682, 2046 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1222 |
| Vha464I | CTTAAG | 3 cut(s) | 943, 1451, 2254 |
| VneI | GTGCAC | 2 cut(s) | 1111, 1500 |
| VpaK11BI | GGWCC | 3 cut(s) | 184, 389, 1677 |
| XapI | RAATTY | 3 cut(s) | 860, 1121, 2298 |
| XceI | RCATGY | 7 cut(s) | 468, 856, 956, 1768, 2271, 2315, 2370 |
| XmnI | GAANNNNTTC | 1 cut(s) | 804 |
| XspI | CTAG | 5 cut(s) | 501, 797, 1211, 1230, 1628 |
| Zsp2I | ATGCAT | 1 cut(s) | 1897 |