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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1625 |
| AccB1I | GGYRCC | 3 cut(s) | 944, 999, 1185 |
| AccI | GTMKAC | 2 cut(s) | 153, 1212 |
| AclWI | GGATC | 2 cut(s) | 108, 779 |
| AcuI | CTGAAG | 4 cut(s) | 270, 604, 653, 1186 |
| AfaI | GTAC | 5 cut(s) | 95, 201, 423, 885, 932 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 986, 1022, 1775 |
| AflIII | ACRYGT | 2 cut(s) | 90, 465 |
| AluBI | AGCT | 7 cut(s) | 618, 713, 1040, 1319, 1442, 1523, 1673 |
| AluI | AGCT | 7 cut(s) | 618, 713, 1040, 1319, 1442, 1523, 1673 |
| Alw21I | GWGCWC | 1 cut(s) | 530 |
| Alw26I | GTCTC | 3 cut(s) | 203, 1333, 1727 |
| AlwI | GGATC | 2 cut(s) | 108, 779 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 293, 1033, 1617 |
| AoxI | GGCC | 3 cut(s) | 636, 1024, 1697 |
| ApeKI | GCWGC | 2 cut(s) | 195, 1250 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 4 cut(s) | 1553, 1614, 1697, 1783 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 6 cut(s) | 34, 401, 877, 1150, 1297, 1325 |
| AvaII | GGWCC | 3 cut(s) | 1553, 1614, 1783 |
| AxyI | CCTNAGG | 2 cut(s) | 72, 497 |
| BanI | GGYRCC | 3 cut(s) | 944, 999, 1185 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 183, 215, 351, 383 |
| BbsI | GAAGAC | 4 cut(s) | 355, 450, 468, 875 |
| Bbv12I | GWGCWC | 1 cut(s) | 530 |
| BbvI | GCAGC | 2 cut(s) | 207, 1237 |
| BccI | CCATC | 5 cut(s) | 380, 651, 989, 1282, 1304 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 3 cut(s) | 203, 1333, 1727 |
| BfaI | CTAG | 5 cut(s) | 615, 782, 992, 1049, 1443 |
| BfmI | CTRYAG | 2 cut(s) | 576, 1787 |
| BfuAI | ACCTGC | 1 cut(s) | 1625 |
| BglII | AGATCT | 1 cut(s) | 830 |
| BisI | GCNGC | 2 cut(s) | 196, 1251 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 2 cut(s) | 197, 1252 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 3 cut(s) | 1553, 1614, 1783 |
| BmgT120I | GGNCC | 4 cut(s) | 1553, 1614, 1697, 1783 |
| BmiI | GGNNCC | 4 cut(s) | 946, 1001, 1187, 1555 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 5 cut(s) | 262, 738, 749, 1042, 1225 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1354 |
| BpiI | GAAGAC | 4 cut(s) | 355, 450, 468, 875 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 23, 55 |
| BpmI | CTGGAG | 1 cut(s) | 1569 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1492 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| BpuEI | CTTGAG | 1 cut(s) | 1071 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaI | GGTCTC | 1 cut(s) | 1333 |
| BsaJI | CCNNGG | 1 cut(s) | 1104 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 986, 1022, 1775 |
| Bse1I | ACTGG | 4 cut(s) | 535, 887, 1027, 1585 |
| Bse21I | CCTNAGG | 2 cut(s) | 72, 497 |
| Bse3DI | GCAATG | 3 cut(s) | 1245, 1325, 1533 |
| BseDI | CCNNGG | 1 cut(s) | 1104 |
| BseGI | GGATG | 7 cut(s) | 87, 352, 391, 678, 740, 1240, 1612 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 986, 1022, 1775 |
| BseMI | GCAATG | 3 cut(s) | 1245, 1325, 1533 |
| BseMII | CTCAG | 5 cut(s) | 54, 63, 402, 672, 705 |
| BseNI | ACTGG | 4 cut(s) | 535, 887, 1027, 1585 |
| BseRI | GAGGAG | 3 cut(s) | 500, 536, 875 |
| BseXI | GCAGC | 2 cut(s) | 207, 1237 |
| BshFI | GGCC | 3 cut(s) | 638, 1026, 1699 |
| BshNI | GGYRCC | 3 cut(s) | 944, 999, 1185 |
| BsiHKAI | GWGCWC | 1 cut(s) | 530 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| BslFI | GGGAC | 1 cut(s) | 1634 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 986, 1022, 1775 |
| BsmAI | GTCTC | 3 cut(s) | 203, 1333, 1727 |
| BsmFI | GGGAC | 1 cut(s) | 1634 |
| BsnI | GGCC | 3 cut(s) | 638, 1026, 1699 |
| Bso31I | GGTCTC | 1 cut(s) | 1333 |
| Bsp1286I | GDGCHC | 1 cut(s) | 530 |
| Bsp1407I | TGTACA | 2 cut(s) | 93, 930 |
| Bsp143I | GATC | 3 cut(s) | 100, 784, 830 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| BspANI | GGCC | 3 cut(s) | 638, 1026, 1699 |
| BspCNI | CTCAG | 5 cut(s) | 53, 64, 403, 673, 706 |
| BspLI | GGNNCC | 4 cut(s) | 946, 1001, 1187, 1555 |
| BspMI | ACCTGC | 1 cut(s) | 1625 |
| BspPI | GGATC | 2 cut(s) | 108, 779 |
| BspT107I | GGYRCC | 3 cut(s) | 944, 999, 1185 |
| BspTNI | GGTCTC | 1 cut(s) | 1333 |
| BsrDI | GCAATG | 3 cut(s) | 1245, 1325, 1533 |
| BsrGI | TGTACA | 2 cut(s) | 93, 930 |
| BsrI | ACTGG | 4 cut(s) | 535, 887, 1027, 1585 |
| BssECI | CCNNGG | 1 cut(s) | 1104 |
| BssMI | GATC | 3 cut(s) | 100, 784, 830 |
| BssNAI | GTATAC | 1 cut(s) | 1213 |
| BssT1I | CCWWGG | 1 cut(s) | 1104 |
| Bst1107I | GTATAC | 1 cut(s) | 1213 |
| Bst4CI | ACNGT | 6 cut(s) | 184, 479, 577, 722, 883, 1267 |
| Bst6I | CTCTTC | 1 cut(s) | 1004 |
| BstAUI | TGTACA | 2 cut(s) | 93, 930 |
| BstC8I | GCNNGC | 1 cut(s) | 596 |
| BstDEI | CTNAG | 7 cut(s) | 40, 72, 411, 497, 681, 714, 1492 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 984, 1020 |
| BstF5I | GGATG | 7 cut(s) | 87, 352, 391, 678, 740, 1240, 1612 |
| BstKTI | GATC | 3 cut(s) | 103, 787, 833 |
| BstMAI | GTCTC | 3 cut(s) | 203, 1333, 1727 |
| BstMBI | GATC | 3 cut(s) | 100, 784, 830 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 635, 1256 |
| BstNSI | RCATGY | 4 cut(s) | 94, 469, 598, 1664 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1354 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 2 cut(s) | 576, 1787 |
| BstV1I | GCAGC | 2 cut(s) | 207, 1237 |
| BstV2I | GAAGAC | 4 cut(s) | 355, 450, 468, 875 |
| BstX2I | RGATCY | 2 cut(s) | 784, 830 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1353 |
| BstYI | RGATCY | 2 cut(s) | 784, 830 |
| BstZ17I | GTATAC | 1 cut(s) | 1213 |
| Bsu36I | CCTNAGG | 2 cut(s) | 72, 497 |
| BsuRI | GGCC | 3 cut(s) | 638, 1026, 1699 |
| BtsCI | GGATG | 7 cut(s) | 87, 352, 391, 678, 740, 1240, 1612 |
| BtsIMutI | CAGTG | 4 cut(s) | 484, 528, 879, 894 |
| BveI | ACCTGC | 1 cut(s) | 1625 |
| Cac8I | GCNNGC | 1 cut(s) | 596 |
| CaiI | CAGNNNCTG | 3 cut(s) | 293, 1033, 1617 |
| Cfr13I | GGNCC | 4 cut(s) | 1553, 1614, 1697, 1783 |
| Csp6I | GTAC | 5 cut(s) | 94, 200, 422, 884, 931 |
| CviQI | GTAC | 5 cut(s) | 94, 200, 422, 884, 931 |
| DdeI | CTNAG | 7 cut(s) | 40, 72, 411, 497, 681, 714, 1492 |
| DpnI | GATC | 3 cut(s) | 102, 786, 832 |
| DpnII | GATC | 3 cut(s) | 100, 784, 830 |
| Eam1104I | CTCTTC | 1 cut(s) | 1004 |
| EarI | CTCTTC | 1 cut(s) | 1004 |
| Eco130I | CCWWGG | 1 cut(s) | 1104 |
| Eco31I | GGTCTC | 1 cut(s) | 1333 |
| Eco47I | GGWCC | 3 cut(s) | 1553, 1614, 1783 |
| Eco57I | CTGAAG | 4 cut(s) | 270, 604, 653, 1186 |
| Eco81I | CCTNAGG | 2 cut(s) | 72, 497 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 984, 1020 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1553, 1614 |
| EcoT14I | CCWWGG | 1 cut(s) | 1104 |
| EcoT22I | ATGCAT | 1 cut(s) | 742 |
| ErhI | CCWWGG | 1 cut(s) | 1104 |
| FaqI | GGGAC | 1 cut(s) | 1634 |
| FauNDI | CATATG | 1 cut(s) | 1750 |
| FblI | GTMKAC | 2 cut(s) | 153, 1212 |
| Fnu4HI | GCNGC | 2 cut(s) | 196, 1251 |
| FokI | GGATG | 7 cut(s) | 94, 359, 398, 685, 727, 1247, 1619 |
| Fsp4HI | GCNGC | 2 cut(s) | 196, 1251 |
| FspBI | CTAG | 5 cut(s) | 615, 782, 992, 1049, 1443 |
| GluI | GCNGC | 2 cut(s) | 196, 1251 |
| GsuI | CTGGAG | 1 cut(s) | 1569 |
| HaeIII | GGCC | 3 cut(s) | 638, 1026, 1699 |
| HapII | CCGG | 1 cut(s) | 20 |
| HincII | GTYRAC | 1 cut(s) | 379 |
| HindII | GTYRAC | 1 cut(s) | 379 |
| HindIII | AAGCTT | 1 cut(s) | 1317 |
| HinfI | GANTC | 8 cut(s) | 38, 143, 281, 540, 960, 1012, 1109, 1415 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 6 cut(s) | 34, 401, 877, 1150, 1297, 1325 |
| Hpy166II | GTNNAC | 4 cut(s) | 154, 379, 1173, 1213 |
| Hpy188I | TCNGA | 8 cut(s) | 43, 129, 268, 289, 517, 623, 633, 682 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 1049, 1271, 1548 |
| Hpy8I | GTNNAC | 4 cut(s) | 154, 379, 1173, 1213 |
| HpyCH4III | ACNGT | 6 cut(s) | 184, 479, 577, 722, 883, 1267 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 635, 1256 |
| HpyF3I | CTNAG | 7 cut(s) | 40, 72, 411, 497, 681, 714, 1492 |
| Kzo9I | GATC | 3 cut(s) | 100, 784, 830 |
| LmnI | GCTCC | 2 cut(s) | 401, 487 |
| Lsp1109I | GCAGC | 2 cut(s) | 207, 1237 |
| LweI | GCATC | 5 cut(s) | 262, 738, 749, 1042, 1225 |
| MaeI | CTAG | 5 cut(s) | 615, 782, 992, 1049, 1443 |
| MaeIII | GTNAC | 4 cut(s) | 305, 563, 1362, 1721 |
| MalI | GATC | 3 cut(s) | 102, 786, 832 |
| MboI | GATC | 3 cut(s) | 100, 784, 830 |
| MboII | GAAGA | 7 cut(s) | 276, 355, 455, 473, 825, 880, 1021 |
| MfeI | CAATTG | 2 cut(s) | 435, 1130 |
| MflI | RGATCY | 2 cut(s) | 784, 830 |
| MhlI | GDGCHC | 1 cut(s) | 530 |
| MluCI | AATT | 7 cut(s) | 10, 435, 702, 1130, 1423, 1458, 1630 |
| MlyI | GAGTC | 3 cut(s) | 32, 1021, 1424 |
| MmeI | TCCRAC | 2 cut(s) | 650, 1134 |
| Mph1103I | ATGCAT | 1 cut(s) | 742 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MseI | TTAA | 7 cut(s) | 6, 87, 552, 729, 1422, 1485, 1677 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 1117 |
| MspA1I | CMGCKG | 1 cut(s) | 1040 |
| MspI | CCGG | 1 cut(s) | 20 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MunI | CAATTG | 2 cut(s) | 435, 1130 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 635, 1256 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeI | CATATG | 1 cut(s) | 1750 |
| NdeII | GATC | 3 cut(s) | 100, 784, 830 |
| NlaIV | GGNNCC | 4 cut(s) | 946, 1001, 1187, 1555 |
| NmuCI | GTSAC | 2 cut(s) | 563, 1362 |
| NsiI | ATGCAT | 1 cut(s) | 742 |
| NspI | RCATGY | 4 cut(s) | 94, 469, 598, 1664 |
| PaeI | GCATGC | 1 cut(s) | 598 |
| PciI | ACATGT | 2 cut(s) | 90, 465 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 5 cut(s) | 143, 281, 540, 960, 1109 |
| PkrI | GCNGC | 2 cut(s) | 197, 1252 |
| PleI | GAGTC | 3 cut(s) | 32, 1020, 1423 |
| PpsI | GAGTC | 3 cut(s) | 32, 1020, 1423 |
| PpuMI | RGGWCCY | 2 cut(s) | 1553, 1614 |
| PscI | ACATGT | 2 cut(s) | 90, 465 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1354 |
| Psp5II | RGGWCCY | 2 cut(s) | 1553, 1614 |
| PspN4I | GGNNCC | 4 cut(s) | 946, 1001, 1187, 1555 |
| PspPI | GGNCC | 4 cut(s) | 1553, 1614, 1697, 1783 |
| PspPPI | RGGWCCY | 2 cut(s) | 1553, 1614 |
| PstNI | CAGNNNCTG | 3 cut(s) | 293, 1033, 1617 |
| PsuI | RGATCY | 2 cut(s) | 784, 830 |
| PvuII | CAGCTG | 1 cut(s) | 1040 |
| RsaI | GTAC | 5 cut(s) | 95, 201, 423, 885, 932 |
| RsaNI | GTAC | 5 cut(s) | 94, 200, 422, 884, 931 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 1117 |
| SaqAI | TTAA | 7 cut(s) | 6, 87, 552, 729, 1422, 1485, 1677 |
| SatI | GCNGC | 2 cut(s) | 196, 1251 |
| Sau3AI | GATC | 3 cut(s) | 100, 784, 830 |
| Sau96I | GGNCC | 4 cut(s) | 1553, 1614, 1697, 1783 |
| SchI | GAGTC | 3 cut(s) | 32, 1021, 1424 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 530 |
| SfaNI | GCATC | 5 cut(s) | 262, 738, 749, 1042, 1225 |
| SfcI | CTRYAG | 2 cut(s) | 576, 1787 |
| SinI | GGWCC | 3 cut(s) | 1553, 1614, 1783 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 1117 |
| SmlI | CTYRAG | 1 cut(s) | 1086 |
| SmoI | CTYRAG | 1 cut(s) | 1086 |
| SphI | GCATGC | 1 cut(s) | 598 |
| Sse9I | AATT | 7 cut(s) | 10, 435, 702, 1130, 1423, 1458, 1630 |
| SspI | AATATT | 1 cut(s) | 1227 |
| SspMI | CTAG | 5 cut(s) | 615, 782, 992, 1049, 1443 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| StyI | CCWWGG | 1 cut(s) | 1104 |
| TaaI | ACNGT | 6 cut(s) | 184, 479, 577, 722, 883, 1267 |
| TasI | AATT | 7 cut(s) | 10, 435, 702, 1130, 1423, 1458, 1630 |
| TatI | WGTACW | 2 cut(s) | 93, 930 |
| TfiI | GAWTC | 5 cut(s) | 143, 281, 540, 960, 1109 |
| Tru1I | TTAA | 7 cut(s) | 6, 87, 552, 729, 1422, 1485, 1677 |
| Tru9I | TTAA | 7 cut(s) | 6, 87, 552, 729, 1422, 1485, 1677 |
| TscAI | CASTG | 4 cut(s) | 484, 535, 886, 894 |
| TseFI | GTSAC | 2 cut(s) | 563, 1362 |
| TseI | GCWGC | 2 cut(s) | 195, 1250 |
| Tsp45I | GTSAC | 2 cut(s) | 563, 1362 |
| TspRI | CASTG | 4 cut(s) | 484, 535, 886, 894 |
| VpaK11BI | GGWCC | 3 cut(s) | 1553, 1614, 1783 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 984, 1020 |
| XbaI | TCTAGA | 1 cut(s) | 1048 |
| XceI | RCATGY | 4 cut(s) | 94, 469, 598, 1664 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 886, 1350 |
| XmiI | GTMKAC | 2 cut(s) | 153, 1212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 5 cut(s) | 615, 782, 992, 1049, 1443 |
| Zsp2I | ATGCAT | 1 cut(s) | 742 |