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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 213 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 316 |
| AccI | GTMKAC | 2 cut(s) | 120, 497 |
| AclWI | GGATC | 4 cut(s) | 10, 23, 659, 746 |
| AfaI | GTAC | 2 cut(s) | 206, 630 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 316, 431, 575, 602 |
| AgsI | TTSAA | 4 cut(s) | 224, 248, 485, 734 |
| AjnI | CCWGG | 1 cut(s) | 258 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 465, 497 |
| AluBI | AGCT | 4 cut(s) | 148, 488, 560, 651 |
| AluI | AGCT | 4 cut(s) | 148, 488, 560, 651 |
| Alw21I | GWGCWC | 1 cut(s) | 653 |
| AlwI | GGATC | 4 cut(s) | 10, 23, 659, 746 |
| AoxI | GGCC | 3 cut(s) | 307, 383, 422 |
| ApeKI | GCWGC | 1 cut(s) | 406 |
| AspA2I | CCTAGG | 1 cut(s) | 389 |
| AspLEI | GCGC | 1 cut(s) | 214 |
| AspS9I | GGNCC | 4 cut(s) | 256, 262, 383, 473 |
| AsuHPI | GGTGA | 2 cut(s) | 299, 761 |
| AvaII | GGWCC | 3 cut(s) | 256, 262, 473 |
| AvrII | CCTAGG | 1 cut(s) | 389 |
| BamHI | GGATCC | 1 cut(s) | 15 |
| BanII | GRGCYC | 2 cut(s) | 653, 784 |
| BbsI | GAAGAC | 2 cut(s) | 231, 571 |
| Bbv12I | GWGCWC | 1 cut(s) | 653 |
| BbvI | GCAGC | 1 cut(s) | 418 |
| BccI | CCATC | 5 cut(s) | 103, 278, 740, 771, 781 |
| BciT130I | CCWGG | 1 cut(s) | 260 |
| BciVI | GTATCC | 1 cut(s) | 603 |
| BfaI | CTAG | 2 cut(s) | 266, 390 |
| BfuI | GTATCC | 1 cut(s) | 603 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 391 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 1 cut(s) | 407 |
| BlnI | CCTAGG | 1 cut(s) | 389 |
| BlpI | GCTNAGC | 1 cut(s) | 536 |
| BlsI | GCNGC | 1 cut(s) | 408 |
| Bme1390I | CCNGG | 1 cut(s) | 260 |
| Bme18I | GGWCC | 3 cut(s) | 256, 262, 473 |
| BmgT120I | GGNCC | 4 cut(s) | 256, 262, 383, 473 |
| BmiI | GGNNCC | 3 cut(s) | 17, 44, 450 |
| BmrFI | CCNGG | 1 cut(s) | 260 |
| BmrI | ACTGGG | 3 cut(s) | 48, 326, 682 |
| BmsI | GCATC | 3 cut(s) | 58, 163, 280 |
| BmuI | ACTGGG | 3 cut(s) | 48, 326, 682 |
| BpiI | GAAGAC | 2 cut(s) | 231, 571 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 766, 798 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 536 |
| BpuEI | CTTGAG | 2 cut(s) | 447, 653 |
| BsaBI | GATNNNNATC | 1 cut(s) | 750 |
| BsaJI | CCNNGG | 2 cut(s) | 389, 501 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 343, 373 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 316, 431, 575, 602 |
| Bse1I | ACTGG | 3 cut(s) | 43, 321, 677 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| Bse8I | GATNNNNATC | 1 cut(s) | 750 |
| BseBI | CCWGG | 1 cut(s) | 260 |
| BseDI | CCNNGG | 2 cut(s) | 389, 501 |
| BseGI | GGATG | 3 cut(s) | 187, 620, 721 |
| BseJI | GATNNNNATC | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 316, 431, 575, 602 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 2 cut(s) | 506, 666 |
| BseNI | ACTGG | 3 cut(s) | 43, 321, 677 |
| BseRI | GAGGAG | 1 cut(s) | 351 |
| BseXI | GCAGC | 1 cut(s) | 418 |
| BseYI | CCCAGC | 1 cut(s) | 431 |
| BshFI | GGCC | 3 cut(s) | 309, 385, 424 |
| BsiHKAI | GWGCWC | 1 cut(s) | 653 |
| BslFI | GGGAC | 1 cut(s) | 355 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 316, 431, 575, 602 |
| BsmFI | GGGAC | 1 cut(s) | 355 |
| BsnI | GGCC | 3 cut(s) | 309, 385, 424 |
| Bsp1286I | GDGCHC | 2 cut(s) | 653, 784 |
| Bsp143I | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 536 |
| BspANI | GGCC | 3 cut(s) | 309, 385, 424 |
| BspCNI | CTCAG | 2 cut(s) | 505, 665 |
| BspLI | GGNNCC | 3 cut(s) | 17, 44, 450 |
| BspPI | GGATC | 4 cut(s) | 10, 23, 659, 746 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrI | ACTGG | 3 cut(s) | 43, 321, 677 |
| BssECI | CCNNGG | 2 cut(s) | 389, 501 |
| BssMI | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| BssT1I | CCWWGG | 2 cut(s) | 389, 501 |
| Bst2UI | CCWGG | 1 cut(s) | 260 |
| Bst4CI | ACNGT | 2 cut(s) | 641, 705 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 4 cut(s) | 492, 536, 652, 658 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 3 cut(s) | 187, 620, 721 |
| BstHHI | GCGC | 1 cut(s) | 214 |
| BstKTI | GATC | 5 cut(s) | 18, 196, 229, 667, 754 |
| BstMBI | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 391 |
| BstNI | CCWGG | 1 cut(s) | 260 |
| BstSCI | CCNGG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 1 cut(s) | 418 |
| BstV2I | GAAGAC | 2 cut(s) | 231, 571 |
| BstX2I | RGATCY | 2 cut(s) | 15, 226 |
| BstYI | RGATCY | 2 cut(s) | 15, 226 |
| BsuI | GTATCC | 1 cut(s) | 603 |
| BsuRI | GGCC | 3 cut(s) | 309, 385, 424 |
| BtsCI | GGATG | 3 cut(s) | 187, 620, 721 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 214 |
| Cfr13I | GGNCC | 4 cut(s) | 256, 262, 383, 473 |
| Csp6I | GTAC | 2 cut(s) | 205, 629 |
| CviAII | CATG | 1 cut(s) | 380 |
| CviQI | GTAC | 2 cut(s) | 205, 629 |
| DdeI | CTNAG | 4 cut(s) | 492, 536, 652, 658 |
| DpnI | GATC | 5 cut(s) | 17, 195, 228, 666, 753 |
| DpnII | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| Ecl136II | GAGCTC | 1 cut(s) | 651 |
| Eco130I | CCWWGG | 2 cut(s) | 389, 501 |
| Eco147I | AGGCCT | 1 cut(s) | 424 |
| Eco24I | GRGCYC | 2 cut(s) | 653, 784 |
| Eco47I | GGWCC | 3 cut(s) | 256, 262, 473 |
| Eco53kI | GAGCTC | 1 cut(s) | 651 |
| EcoICRI | GAGCTC | 1 cut(s) | 651 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 600 |
| EcoO109I | RGGNCCY | 1 cut(s) | 256 |
| EcoRII | CCWGG | 1 cut(s) | 258 |
| EcoT14I | CCWWGG | 2 cut(s) | 389, 501 |
| EcoT38I | GRGCYC | 2 cut(s) | 653, 784 |
| ErhI | CCWWGG | 2 cut(s) | 389, 501 |
| FaeI | CATG | 1 cut(s) | 383 |
| FaqI | GGGAC | 1 cut(s) | 355 |
| FatI | CATG | 1 cut(s) | 379 |
| FauNDI | CATATG | 1 cut(s) | 622 |
| FblI | GTMKAC | 2 cut(s) | 120, 497 |
| Fnu4HI | GCNGC | 1 cut(s) | 407 |
| FokI | GGATG | 3 cut(s) | 194, 627, 728 |
| FriOI | GRGCYC | 2 cut(s) | 653, 784 |
| Fsp4HI | GCNGC | 1 cut(s) | 407 |
| FspBI | CTAG | 2 cut(s) | 266, 390 |
| FspI | TGCGCA | 1 cut(s) | 213 |
| GlaI | GCGC | 1 cut(s) | 213 |
| GluI | GCNGC | 1 cut(s) | 407 |
| GsaI | CCCAGC | 1 cut(s) | 435 |
| HaeIII | GGCC | 3 cut(s) | 309, 385, 424 |
| HhaI | GCGC | 1 cut(s) | 214 |
| Hin1II | CATG | 1 cut(s) | 383 |
| Hin6I | GCGC | 1 cut(s) | 212 |
| HinP1I | GCGC | 1 cut(s) | 212 |
| HindIII | AAGCTT | 1 cut(s) | 486 |
| HphI | GGTGA | 2 cut(s) | 299, 761 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 498 |
| Hpy188I | TCNGA | 2 cut(s) | 655, 786 |
| Hpy188III | TCNNGA | 3 cut(s) | 99, 455, 471 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 498 |
| HpyAV | CCTTC | 3 cut(s) | 299, 396, 414 |
| HpyCH4III | ACNGT | 2 cut(s) | 641, 705 |
| HpyCH4V | TGCA | 4 cut(s) | 176, 293, 583, 727 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 391 |
| HpyF3I | CTNAG | 4 cut(s) | 492, 536, 652, 658 |
| Hsp92II | CATG | 1 cut(s) | 383 |
| HspAI | GCGC | 1 cut(s) | 212 |
| Kzo9I | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| LmnI | GCTCC | 2 cut(s) | 87, 448 |
| Lsp1109I | GCAGC | 1 cut(s) | 418 |
| LweI | GCATC | 3 cut(s) | 58, 163, 280 |
| MaeI | CTAG | 2 cut(s) | 266, 390 |
| MaeIII | GTNAC | 2 cut(s) | 55, 790 |
| MalI | GATC | 5 cut(s) | 17, 195, 228, 666, 753 |
| MboI | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| MboII | GAAGA | 5 cut(s) | 197, 231, 236, 345, 576 |
| MflI | RGATCY | 2 cut(s) | 15, 226 |
| MhlI | GDGCHC | 2 cut(s) | 653, 784 |
| MluCI | AATT | 3 cut(s) | 86, 722, 728 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MseI | TTAA | 2 cut(s) | 438, 444 |
| MspR9I | CCNGG | 1 cut(s) | 260 |
| MvaI | CCWGG | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 391 |
| NdeI | CATATG | 1 cut(s) | 622 |
| NdeII | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| NlaIII | CATG | 1 cut(s) | 383 |
| NlaIV | GGNNCC | 3 cut(s) | 17, 44, 450 |
| NmuCI | GTSAC | 2 cut(s) | 55, 790 |
| NsbI | TGCGCA | 1 cut(s) | 213 |
| PceI | AGGCCT | 1 cut(s) | 424 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 316 |
| PkrI | GCNGC | 1 cut(s) | 408 |
| PpuMI | RGGWCCY | 1 cut(s) | 256 |
| Psp124BI | GAGCTC | 1 cut(s) | 653 |
| Psp5II | RGGWCCY | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 258 |
| PspFI | CCCAGC | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 3 cut(s) | 17, 44, 450 |
| PspPI | GGNCC | 4 cut(s) | 256, 262, 383, 473 |
| PspPPI | RGGWCCY | 1 cut(s) | 256 |
| PsuI | RGATCY | 2 cut(s) | 15, 226 |
| RsaI | GTAC | 2 cut(s) | 206, 630 |
| RsaNI | GTAC | 2 cut(s) | 205, 629 |
| SacI | GAGCTC | 1 cut(s) | 653 |
| SaqAI | TTAA | 2 cut(s) | 438, 444 |
| SatI | GCNGC | 1 cut(s) | 407 |
| Sau3AI | GATC | 5 cut(s) | 15, 193, 226, 664, 751 |
| Sau96I | GGNCC | 4 cut(s) | 256, 262, 383, 473 |
| ScrFI | CCNGG | 1 cut(s) | 260 |
| SduI | GDGCHC | 2 cut(s) | 653, 784 |
| SfaNI | GCATC | 3 cut(s) | 58, 163, 280 |
| SinI | GGWCC | 3 cut(s) | 256, 262, 473 |
| SmlI | CTYRAG | 2 cut(s) | 462, 632 |
| SmoI | CTYRAG | 2 cut(s) | 462, 632 |
| Sse9I | AATT | 3 cut(s) | 86, 722, 728 |
| SseBI | AGGCCT | 1 cut(s) | 424 |
| SspMI | CTAG | 2 cut(s) | 266, 390 |
| SstI | GAGCTC | 1 cut(s) | 653 |
| StuI | AGGCCT | 1 cut(s) | 424 |
| StyD4I | CCNGG | 1 cut(s) | 258 |
| StyI | CCWWGG | 2 cut(s) | 389, 501 |
| TaaI | ACNGT | 2 cut(s) | 641, 705 |
| TaqI | TCGA | 1 cut(s) | 192 |
| TaqII | GACCGA | 1 cut(s) | 583 |
| TasI | AATT | 3 cut(s) | 86, 722, 728 |
| TatI | WGTACW | 2 cut(s) | 204, 628 |
| Tru1I | TTAA | 2 cut(s) | 438, 444 |
| Tru9I | TTAA | 2 cut(s) | 438, 444 |
| TscAI | CASTG | 1 cut(s) | 43 |
| TseFI | GTSAC | 2 cut(s) | 55, 790 |
| TseI | GCWGC | 1 cut(s) | 406 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 790 |
| TspDTI | ATGAA | 6 cut(s) | 198, 208, 318, 609, 714, 735 |
| TspGWI | ACGGA | 1 cut(s) | 624 |
| TspRI | CASTG | 1 cut(s) | 43 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 316 |
| VpaK11BI | GGWCC | 3 cut(s) | 256, 262, 473 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 600 |
| XmaJI | CCTAGG | 1 cut(s) | 389 |
| XmiI | GTMKAC | 2 cut(s) | 120, 497 |
| XspI | CTAG | 2 cut(s) | 266, 390 |