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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 378 |
| Acc36I | ACCTGC | 1 cut(s) | 204 |
| AccB1I | GGYRCC | 1 cut(s) | 1237 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 260, 1160 |
| AccI | GTMKAC | 2 cut(s) | 831, 1150 |
| AclWI | GGATC | 2 cut(s) | 362, 441 |
| AcsI | RAATTY | 1 cut(s) | 333 |
| AcuI | CTGAAG | 1 cut(s) | 752 |
| AfaI | GTAC | 1 cut(s) | 1106 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 130, 260, 555, 1160, 1327 |
| AjnI | CCWGG | 2 cut(s) | 253, 1300 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 383, 415, 908, 940 |
| AleI | CACNNNNGTG | 1 cut(s) | 809 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 215, 247 |
| Alw26I | GTCTC | 2 cut(s) | 186, 885 |
| AlwI | GGATC | 2 cut(s) | 362, 441 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 905 |
| AoxI | GGCC | 1 cut(s) | 698 |
| ApeKI | GCWGC | 6 cut(s) | 144, 279, 683, 899, 902, 1084 |
| ApoI | RAATTY | 1 cut(s) | 333 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 3 cut(s) | 1033, 1278, 1318 |
| AsuHPI | GGTGA | 5 cut(s) | 145, 733, 823, 1169, 1208 |
| AvaII | GGWCC | 3 cut(s) | 1033, 1278, 1318 |
| AxyI | CCTNAGG | 1 cut(s) | 324 |
| BaeGI | GKGCMC | 1 cut(s) | 1272 |
| BanI | GGYRCC | 1 cut(s) | 1237 |
| BauI | CACGAG | 1 cut(s) | 167 |
| BbvI | GCAGC | 6 cut(s) | 131, 291, 670, 889, 911, 1071 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 821, 855 |
| BciT130I | CCWGG | 2 cut(s) | 255, 1302 |
| BciVI | GTATCC | 1 cut(s) | 243 |
| BclI | TGATCA | 1 cut(s) | 171 |
| BcoDI | GTCTC | 2 cut(s) | 186, 885 |
| BfaI | CTAG | 3 cut(s) | 827, 1077, 1244 |
| BfmI | CTRYAG | 2 cut(s) | 81, 884 |
| BfuAI | ACCTGC | 1 cut(s) | 204 |
| BfuI | GTATCC | 1 cut(s) | 243 |
| BisI | GCNGC | 6 cut(s) | 145, 280, 684, 900, 903, 1085 |
| BlpI | GCTNAGC | 1 cut(s) | 843 |
| BlsI | GCNGC | 6 cut(s) | 146, 281, 685, 901, 904, 1086 |
| Bme1390I | CCNGG | 2 cut(s) | 255, 1302 |
| Bme18I | GGWCC | 3 cut(s) | 1033, 1278, 1318 |
| BmgT120I | GGNCC | 3 cut(s) | 1033, 1278, 1318 |
| BmiI | GGNNCC | 2 cut(s) | 1035, 1239 |
| BmrFI | CCNGG | 2 cut(s) | 255, 1302 |
| BmsI | GCATC | 2 cut(s) | 88, 943 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 511, 543 |
| Bpu10I | CCTNAGC | 2 cut(s) | 554, 1014 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 843 |
| BpuEI | CTTGAG | 2 cut(s) | 989, 1166 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 1 cut(s) | 915 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 710, 740 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 130, 260, 555, 1160, 1327 |
| Bse1I | ACTGG | 2 cut(s) | 795, 1360 |
| Bse21I | CCTNAGG | 1 cut(s) | 324 |
| BseBI | CCWGG | 2 cut(s) | 255, 1302 |
| BseDI | CCNNGG | 1 cut(s) | 915 |
| BseGI | GGATG | 8 cut(s) | 25, 30, 229, 250, 564, 715, 958, 1178 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 130, 260, 555, 1160, 1327 |
| BseMII | CTCAG | 4 cut(s) | 338, 657, 691, 834 |
| BseNI | ACTGG | 2 cut(s) | 795, 1360 |
| BseRI | GAGGAG | 1 cut(s) | 518 |
| BseSI | GKGCMC | 1 cut(s) | 1272 |
| BseXI | GCAGC | 6 cut(s) | 131, 291, 670, 889, 911, 1071 |
| BseYI | CCCAGC | 2 cut(s) | 549, 1142 |
| BsgI | GTGCAG | 1 cut(s) | 1022 |
| BshFI | GGCC | 1 cut(s) | 700 |
| BshNI | GGYRCC | 1 cut(s) | 1237 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 130, 260, 555, 1160, 1327 |
| BsmAI | GTCTC | 2 cut(s) | 186, 885 |
| BsmI | GAATGC | 1 cut(s) | 529 |
| BsnI | GGCC | 1 cut(s) | 700 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1272 |
| Bsp143I | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 843 |
| BspANI | GGCC | 1 cut(s) | 700 |
| BspCNI | CTCAG | 5 cut(s) | 4, 337, 656, 690, 835 |
| BspLI | GGNNCC | 2 cut(s) | 1035, 1239 |
| BspMI | ACCTGC | 1 cut(s) | 204 |
| BspPI | GGATC | 2 cut(s) | 362, 441 |
| BspT107I | GGYRCC | 1 cut(s) | 1237 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrI | ACTGG | 2 cut(s) | 795, 1360 |
| BssECI | CCNNGG | 1 cut(s) | 915 |
| BssMI | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| BssSI | CACGAG | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 1 cut(s) | 915 |
| Bst2BI | CACGAG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 1302 |
| Bst4CI | ACNGT | 1 cut(s) | 1048 |
| BstDEI | CTNAG | 8 cut(s) | 12, 324, 554, 643, 677, 843, 945, 1014 |
| BstF5I | GGATG | 8 cut(s) | 25, 30, 229, 250, 564, 715, 958, 1178 |
| BstKTI | GATC | 5 cut(s) | 174, 370, 436, 510, 1252 |
| BstMAI | GTCTC | 2 cut(s) | 186, 885 |
| BstMBI | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 853, 911 |
| BstNI | CCWGG | 2 cut(s) | 255, 1302 |
| BstNSI | RCATGY | 1 cut(s) | 1227 |
| BstSCI | CCNGG | 2 cut(s) | 253, 1300 |
| BstSFI | CTRYAG | 2 cut(s) | 81, 884 |
| BstSLI | GKGCMC | 1 cut(s) | 1272 |
| BstV1I | GCAGC | 6 cut(s) | 131, 291, 670, 889, 911, 1071 |
| Bsu36I | CCTNAGG | 1 cut(s) | 324 |
| BsuI | GTATCC | 1 cut(s) | 243 |
| BsuRI | GGCC | 1 cut(s) | 700 |
| BtsCI | GGATG | 8 cut(s) | 25, 30, 229, 250, 564, 715, 958, 1178 |
| BtsI | GCAGTG | 1 cut(s) | 289 |
| BtsIMutI | CAGTG | 2 cut(s) | 289, 1053 |
| BveI | ACCTGC | 1 cut(s) | 204 |
| CaiI | CAGNNNCTG | 1 cut(s) | 905 |
| Cfr13I | GGNCC | 3 cut(s) | 1033, 1278, 1318 |
| CsiI | ACCWGGT | 1 cut(s) | 253 |
| Csp6I | GTAC | 1 cut(s) | 1105 |
| CviAII | CATG | 5 cut(s) | 175, 200, 235, 979, 1224 |
| CviQI | GTAC | 1 cut(s) | 1105 |
| DdeI | CTNAG | 8 cut(s) | 12, 324, 554, 643, 677, 843, 945, 1014 |
| DpnI | GATC | 5 cut(s) | 173, 369, 435, 509, 1251 |
| DpnII | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| DraI | TTTAAA | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 1 cut(s) | 915 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| Eco32I | GATATC | 1 cut(s) | 1054 |
| Eco47I | GGWCC | 3 cut(s) | 1033, 1278, 1318 |
| Eco57I | CTGAAG | 1 cut(s) | 752 |
| Eco81I | CCTNAGG | 1 cut(s) | 324 |
| EcoRII | CCWGG | 2 cut(s) | 253, 1300 |
| EcoRV | GATATC | 1 cut(s) | 1054 |
| EcoT14I | CCWWGG | 1 cut(s) | 915 |
| ErhI | CCWWGG | 1 cut(s) | 915 |
| FaeI | CATG | 5 cut(s) | 178, 203, 238, 982, 1227 |
| FatI | CATG | 5 cut(s) | 174, 199, 234, 978, 1223 |
| FbaI | TGATCA | 1 cut(s) | 171 |
| FblI | GTMKAC | 2 cut(s) | 831, 1150 |
| Fnu4HI | GCNGC | 6 cut(s) | 145, 280, 684, 900, 903, 1085 |
| FokI | GGATG | 8 cut(s) | 32, 37, 236, 257, 571, 722, 965, 1185 |
| Fsp4HI | GCNGC | 6 cut(s) | 145, 280, 684, 900, 903, 1085 |
| FspBI | CTAG | 3 cut(s) | 827, 1077, 1244 |
| GluI | GCNGC | 6 cut(s) | 145, 280, 684, 900, 903, 1085 |
| GsaI | CCCAGC | 2 cut(s) | 553, 1146 |
| HaeIII | GGCC | 1 cut(s) | 700 |
| Hin1II | CATG | 5 cut(s) | 178, 203, 238, 982, 1227 |
| HincII | GTYRAC | 2 cut(s) | 640, 832 |
| HindII | GTYRAC | 2 cut(s) | 640, 832 |
| HindIII | AAGCTT | 1 cut(s) | 854 |
| HinfI | GANTC | 3 cut(s) | 641, 878, 1134 |
| HphI | GGTGA | 5 cut(s) | 145, 733, 823, 1169, 1208 |
| Hpy166II | GTNNAC | 6 cut(s) | 640, 832, 1033, 1151, 1278, 1344 |
| Hpy188I | TCNGA | 6 cut(s) | 91, 531, 646, 680, 732, 1384 |
| Hpy188III | TCNNGA | 6 cut(s) | 169, 182, 326, 511, 707, 1183 |
| Hpy8I | GTNNAC | 6 cut(s) | 640, 832, 1033, 1151, 1278, 1344 |
| HpyAV | CCTTC | 4 cut(s) | 54, 976, 1021, 1309 |
| HpyCH4III | ACNGT | 1 cut(s) | 1048 |
| HpyCH4IV | ACGT | 1 cut(s) | 1107 |
| HpyCH4V | TGCA | 8 cut(s) | 101, 199, 686, 765, 995, 1003, 1121, 1223 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 853, 911 |
| HpyF3I | CTNAG | 8 cut(s) | 12, 324, 554, 643, 677, 843, 945, 1014 |
| HpySE526I | ACGT | 1 cut(s) | 1107 |
| Hsp92II | CATG | 5 cut(s) | 178, 203, 238, 982, 1227 |
| Ksp22I | TGATCA | 1 cut(s) | 171 |
| Kzo9I | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| LmnI | GCTCC | 1 cut(s) | 985 |
| Lsp1109I | GCAGC | 6 cut(s) | 131, 291, 670, 889, 911, 1071 |
| LweI | GCATC | 2 cut(s) | 88, 943 |
| MabI | ACCWGGT | 1 cut(s) | 253 |
| MaeI | CTAG | 3 cut(s) | 827, 1077, 1244 |
| MaeII | ACGT | 1 cut(s) | 1107 |
| MaeIII | GTNAC | 3 cut(s) | 133, 1061, 1175 |
| MalI | GATC | 5 cut(s) | 173, 369, 435, 509, 1251 |
| MboI | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| MfeI | CAATTG | 1 cut(s) | 1392 |
| MhlI | GDGCHC | 1 cut(s) | 1272 |
| MluCI | AATT | 6 cut(s) | 333, 427, 702, 775, 1282, 1392 |
| MlyI | GAGTC | 2 cut(s) | 635, 887 |
| MmeI | TCCRAC | 1 cut(s) | 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MseI | TTAA | 5 cut(s) | 8, 420, 669, 689, 858 |
| MslI | CAYNNNNRTG | 3 cut(s) | 204, 459, 809 |
| MspA1I | CMGCKG | 3 cut(s) | 902, 1084, 1324 |
| MspR9I | CCNGG | 2 cut(s) | 255, 1302 |
| MunI | CAATTG | 1 cut(s) | 1392 |
| Mva1269I | GAATGC | 1 cut(s) | 529 |
| MvaI | CCWGG | 2 cut(s) | 255, 1302 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 853, 911 |
| NdeII | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| NlaIII | CATG | 5 cut(s) | 178, 203, 238, 982, 1227 |
| NlaIV | GGNNCC | 2 cut(s) | 1035, 1239 |
| NmeAIII | GCCGAG | 1 cut(s) | 377 |
| NmuCI | GTSAC | 3 cut(s) | 133, 1061, 1175 |
| NspI | RCATGY | 1 cut(s) | 1227 |
| OliI | CACNNNNGTG | 1 cut(s) | 809 |
| PctI | GAATGC | 1 cut(s) | 529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 1 cut(s) | 1134 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 260, 1160 |
| PkrI | GCNGC | 6 cut(s) | 146, 281, 685, 901, 904, 1086 |
| PleI | GAGTC | 2 cut(s) | 635, 886 |
| PpsI | GAGTC | 2 cut(s) | 635, 886 |
| PsiI | TTATAA | 1 cut(s) | 378 |
| Psp6I | CCWGG | 2 cut(s) | 253, 1300 |
| PspFI | CCCAGC | 2 cut(s) | 549, 1142 |
| PspGI | CCWGG | 2 cut(s) | 253, 1300 |
| PspN4I | GGNNCC | 2 cut(s) | 1035, 1239 |
| PspPI | GGNCC | 3 cut(s) | 1033, 1278, 1318 |
| PstNI | CAGNNNCTG | 1 cut(s) | 905 |
| PvuII | CAGCTG | 3 cut(s) | 902, 1084, 1324 |
| RsaI | GTAC | 1 cut(s) | 1106 |
| RsaNI | GTAC | 1 cut(s) | 1105 |
| RseI | CAYNNNNRTG | 3 cut(s) | 204, 459, 809 |
| SalI | GTCGAC | 1 cut(s) | 830 |
| SaqAI | TTAA | 5 cut(s) | 8, 420, 669, 689, 858 |
| SatI | GCNGC | 6 cut(s) | 145, 280, 684, 900, 903, 1085 |
| Sau3AI | GATC | 5 cut(s) | 171, 367, 433, 507, 1249 |
| Sau96I | GGNCC | 3 cut(s) | 1033, 1278, 1318 |
| SchI | GAGTC | 2 cut(s) | 635, 887 |
| ScrFI | CCNGG | 2 cut(s) | 255, 1302 |
| SduI | GDGCHC | 1 cut(s) | 1272 |
| SexAI | ACCWGGT | 1 cut(s) | 253 |
| SfaNI | GCATC | 2 cut(s) | 88, 943 |
| SfcI | CTRYAG | 2 cut(s) | 81, 884 |
| SinI | GGWCC | 3 cut(s) | 1033, 1278, 1318 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 204, 459, 809 |
| SmlI | CTYRAG | 2 cut(s) | 968, 1181 |
| SmoI | CTYRAG | 2 cut(s) | 968, 1181 |
| Sse9I | AATT | 6 cut(s) | 333, 427, 702, 775, 1282, 1392 |
| SspMI | CTAG | 3 cut(s) | 827, 1077, 1244 |
| StyD4I | CCNGG | 2 cut(s) | 253, 1300 |
| StyI | CCWWGG | 1 cut(s) | 915 |
| TaaI | ACNGT | 1 cut(s) | 1048 |
| TaiI | ACGT | 1 cut(s) | 1110 |
| TaqI | TCGA | 1 cut(s) | 831 |
| TaqII | GACCGA | 1 cut(s) | 138 |
| TasI | AATT | 6 cut(s) | 333, 427, 702, 775, 1282, 1392 |
| TfiI | GAWTC | 1 cut(s) | 1134 |
| Tru1I | TTAA | 5 cut(s) | 8, 420, 669, 689, 858 |
| Tru9I | TTAA | 5 cut(s) | 8, 420, 669, 689, 858 |
| TscAI | CASTG | 2 cut(s) | 289, 1053 |
| TseFI | GTSAC | 3 cut(s) | 133, 1061, 1175 |
| TseI | GCWGC | 6 cut(s) | 144, 279, 683, 899, 902, 1084 |
| Tsp45I | GTSAC | 3 cut(s) | 133, 1061, 1175 |
| TspDTI | ATGAA | 9 cut(s) | 216, 223, 228, 477, 609, 912, 995, 1328, 1401 |
| TspRI | CASTG | 2 cut(s) | 289, 1053 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 260, 1160 |
| VpaK11BI | GGWCC | 3 cut(s) | 1033, 1278, 1318 |
| XapI | RAATTY | 1 cut(s) | 333 |
| XceI | RCATGY | 1 cut(s) | 1227 |
| XmiI | GTMKAC | 2 cut(s) | 831, 1150 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 3 cut(s) | 827, 1077, 1244 |