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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1165 |
| Acc36I | ACCTGC | 2 cut(s) | 413, 1165 |
| AccB1I | GGYRCC | 1 cut(s) | 219 |
| AcoI | YGGCCR | 2 cut(s) | 1033, 1216 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 191, 500, 888, 1031, 1169 |
| AgsI | TTSAA | 8 cut(s) | 81, 443, 481, 559, 610, 817, 943, 1084 |
| AjnI | CCWGG | 3 cut(s) | 323, 1093, 1126 |
| AleI | CACNNNNGTG | 1 cut(s) | 545 |
| AluBI | AGCT | 3 cut(s) | 800, 898, 1262 |
| AluI | AGCT | 3 cut(s) | 800, 898, 1262 |
| Alw21I | GWGCWC | 1 cut(s) | 793 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1277 |
| AoxI | GGCC | 8 cut(s) | 10, 182, 483, 865, 1002, 1033, 1100, 1216 |
| AspS9I | GGNCC | 3 cut(s) | 321, 734, 865 |
| AsuC2I | CCSGG | 2 cut(s) | 75, 495 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 694, 1129 |
| AvaII | GGWCC | 2 cut(s) | 321, 734 |
| BaeGI | GKGCMC | 1 cut(s) | 222 |
| BalI | TGGCCA | 2 cut(s) | 1035, 1218 |
| BanI | GGYRCC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 1 cut(s) | 793 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BccI | CCATC | 4 cut(s) | 101, 194, 231, 673 |
| BceAI | ACGGC | 1 cut(s) | 908 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1079, 1113 |
| BciT130I | CCWGG | 3 cut(s) | 325, 1095, 1128 |
| BciVI | GTATCC | 1 cut(s) | 900 |
| BcnI | CCSGG | 2 cut(s) | 75, 495 |
| BfaI | CTAG | 1 cut(s) | 630 |
| BfmI | CTRYAG | 2 cut(s) | 178, 543 |
| BfuAI | ACCTGC | 2 cut(s) | 413, 1165 |
| BfuI | GTATCC | 1 cut(s) | 900 |
| BglII | AGATCT | 1 cut(s) | 859 |
| Bme1390I | CCNGG | 5 cut(s) | 75, 325, 495, 1095, 1128 |
| Bme18I | GGWCC | 2 cut(s) | 321, 734 |
| BmgT120I | GGNCC | 3 cut(s) | 321, 734, 865 |
| BmiI | GGNNCC | 3 cut(s) | 221, 1050, 1125 |
| BmrFI | CCNGG | 5 cut(s) | 75, 325, 495, 1095, 1128 |
| BmsI | GCATC | 3 cut(s) | 247, 472, 499 |
| Bpu10I | CCTNAGC | 2 cut(s) | 297, 1263 |
| BpuMI | CCSGG | 2 cut(s) | 75, 495 |
| BsaJI | CCNNGG | 1 cut(s) | 494 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 191, 500, 888, 1031, 1169 |
| Bse1I | ACTGG | 1 cut(s) | 829 |
| Bse3DI | GCAATG | 2 cut(s) | 291, 1065 |
| BseBI | CCWGG | 3 cut(s) | 325, 1095, 1128 |
| BseDI | CCNNGG | 1 cut(s) | 494 |
| BseGI | GGATG | 6 cut(s) | 112, 138, 174, 205, 276, 490 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 191, 500, 888, 1031, 1169 |
| BseMI | GCAATG | 2 cut(s) | 291, 1065 |
| BseMII | CTCAG | 3 cut(s) | 288, 294, 890 |
| BseNI | ACTGG | 1 cut(s) | 829 |
| BseSI | GKGCMC | 1 cut(s) | 222 |
| BseYI | CCCAGC | 2 cut(s) | 406, 800 |
| BsgI | GTGCAG | 1 cut(s) | 1143 |
| BshFI | GGCC | 8 cut(s) | 12, 184, 485, 867, 1004, 1035, 1102, 1218 |
| BshNI | GGYRCC | 1 cut(s) | 219 |
| BsiHKAI | GWGCWC | 1 cut(s) | 793 |
| BsiSI | CCGG | 2 cut(s) | 74, 494 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 191, 500, 888, 1031, 1169 |
| BsmI | GAATGC | 1 cut(s) | 529 |
| BsnI | GGCC | 8 cut(s) | 12, 184, 485, 867, 1004, 1035, 1102, 1218 |
| Bsp1286I | GDGCHC | 2 cut(s) | 222, 793 |
| Bsp1407I | TGTACA | 1 cut(s) | 135 |
| Bsp143I | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| BspANI | GGCC | 8 cut(s) | 12, 184, 485, 867, 1004, 1035, 1102, 1218 |
| BspCNI | CTCAG | 3 cut(s) | 289, 295, 891 |
| BspHI | TCATGA | 1 cut(s) | 970 |
| BspLI | GGNNCC | 3 cut(s) | 221, 1050, 1125 |
| BspMAI | CTGCAG | 1 cut(s) | 182 |
| BspMI | ACCTGC | 2 cut(s) | 413, 1165 |
| BspT107I | GGYRCC | 1 cut(s) | 219 |
| BsrDI | GCAATG | 2 cut(s) | 291, 1065 |
| BsrGI | TGTACA | 1 cut(s) | 135 |
| BsrI | ACTGG | 1 cut(s) | 829 |
| BssECI | CCNNGG | 1 cut(s) | 494 |
| BssMI | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| Bst2UI | CCWGG | 3 cut(s) | 325, 1095, 1128 |
| Bst4CI | ACNGT | 4 cut(s) | 85, 234, 544, 1279 |
| Bst6I | CTCTTC | 1 cut(s) | 694 |
| BstAUI | TGTACA | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 4 cut(s) | 154, 182, 848, 1033 |
| BstDEI | CTNAG | 6 cut(s) | 297, 303, 570, 899, 1104, 1263 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 886, 1167 |
| BstF5I | GGATG | 6 cut(s) | 112, 138, 174, 205, 276, 490 |
| BstKTI | GATC | 6 cut(s) | 25, 93, 536, 753, 822, 862 |
| BstMBI | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 403, 797, 929, 1157, 1265, 1268 |
| BstNI | CCWGG | 3 cut(s) | 325, 1095, 1128 |
| BstNSI | RCATGY | 2 cut(s) | 156, 854 |
| BstSCI | CCNGG | 5 cut(s) | 73, 323, 493, 1093, 1126 |
| BstSFI | CTRYAG | 2 cut(s) | 178, 543 |
| BstSLI | GKGCMC | 1 cut(s) | 222 |
| BstX2I | RGATCY | 1 cut(s) | 859 |
| BstYI | RGATCY | 1 cut(s) | 859 |
| BsuI | GTATCC | 1 cut(s) | 900 |
| BsuRI | GGCC | 8 cut(s) | 12, 184, 485, 867, 1004, 1035, 1102, 1218 |
| BtsCI | GGATG | 6 cut(s) | 112, 138, 174, 205, 276, 490 |
| BtsIMutI | CAGTG | 2 cut(s) | 540, 822 |
| BveI | ACCTGC | 2 cut(s) | 413, 1165 |
| Cac8I | GCNNGC | 4 cut(s) | 154, 182, 848, 1033 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1277 |
| CciI | TCATGA | 1 cut(s) | 970 |
| Cfr13I | GGNCC | 3 cut(s) | 321, 734, 865 |
| CsiI | ACCWGGT | 1 cut(s) | 1093 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 6 cut(s) | 153, 318, 839, 851, 920, 971 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 6 cut(s) | 297, 303, 570, 899, 1104, 1263 |
| DpnI | GATC | 6 cut(s) | 24, 92, 535, 752, 821, 861 |
| DpnII | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| EaeI | YGGCCR | 2 cut(s) | 1033, 1216 |
| Eam1104I | CTCTTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 1 cut(s) | 694 |
| Eco147I | AGGCCT | 2 cut(s) | 184, 1004 |
| Eco47I | GGWCC | 2 cut(s) | 321, 734 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 886, 1167 |
| EcoRII | CCWGG | 3 cut(s) | 323, 1093, 1126 |
| FaeI | CATG | 6 cut(s) | 156, 321, 842, 854, 923, 974 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 691, 723 |
| FatI | CATG | 6 cut(s) | 152, 317, 838, 850, 919, 970 |
| FauNDI | CATATG | 1 cut(s) | 286 |
| FokI | GGATG | 6 cut(s) | 119, 145, 181, 212, 283, 477 |
| FspBI | CTAG | 1 cut(s) | 630 |
| GsaI | CCCAGC | 2 cut(s) | 410, 804 |
| HaeIII | GGCC | 8 cut(s) | 12, 184, 485, 867, 1004, 1035, 1102, 1218 |
| HapII | CCGG | 2 cut(s) | 74, 494 |
| Hin1II | CATG | 6 cut(s) | 156, 321, 842, 854, 923, 974 |
| HinfI | GANTC | 5 cut(s) | 566, 602, 741, 939, 1138 |
| HpaII | CCGG | 2 cut(s) | 74, 494 |
| HphI | GGTGA | 3 cut(s) | 122, 694, 1129 |
| Hpy188I | TCNGA | 2 cut(s) | 129, 1143 |
| Hpy188III | TCNNGA | 5 cut(s) | 94, 745, 817, 943, 971 |
| HpyAV | CCTTC | 5 cut(s) | 46, 715, 878, 1114, 1163 |
| HpyCH4III | ACNGT | 4 cut(s) | 85, 234, 544, 1279 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 403, 797, 929, 1157, 1265, 1268 |
| HpyF3I | CTNAG | 6 cut(s) | 297, 303, 570, 899, 1104, 1263 |
| Hsp92II | CATG | 6 cut(s) | 156, 321, 842, 854, 923, 974 |
| Kzo9I | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| LweI | GCATC | 3 cut(s) | 247, 472, 499 |
| MabI | ACCWGGT | 1 cut(s) | 1093 |
| MaeI | CTAG | 1 cut(s) | 630 |
| MaeIII | GTNAC | 3 cut(s) | 110, 206, 575 |
| MalI | GATC | 6 cut(s) | 24, 92, 535, 752, 821, 861 |
| MboI | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| MboII | GAAGA | 3 cut(s) | 367, 711, 760 |
| MfeI | CAATTG | 3 cut(s) | 279, 417, 512 |
| MflI | RGATCY | 1 cut(s) | 859 |
| MhlI | GDGCHC | 2 cut(s) | 222, 793 |
| MlsI | TGGCCA | 2 cut(s) | 1035, 1218 |
| MluCI | AATT | 6 cut(s) | 56, 189, 279, 417, 475, 512 |
| MluNI | TGGCCA | 2 cut(s) | 1035, 1218 |
| MlyI | GAGTC | 2 cut(s) | 575, 611 |
| MmeI | TCCRAC | 1 cut(s) | 712 |
| Mox20I | TGGCCA | 2 cut(s) | 1035, 1218 |
| MscI | TGGCCA | 2 cut(s) | 1035, 1218 |
| MseI | TTAA | 3 cut(s) | 62, 935, 1288 |
| MslI | CAYNNNNRTG | 2 cut(s) | 545, 668 |
| Msp20I | TGGCCA | 2 cut(s) | 1035, 1218 |
| MspA1I | CMGCKG | 1 cut(s) | 898 |
| MspI | CCGG | 2 cut(s) | 74, 494 |
| MspR9I | CCNGG | 5 cut(s) | 75, 325, 495, 1095, 1128 |
| MunI | CAATTG | 3 cut(s) | 279, 417, 512 |
| Mva1269I | GAATGC | 1 cut(s) | 529 |
| MvaI | CCWGG | 3 cut(s) | 325, 1095, 1128 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 403, 797, 929, 1157, 1265, 1268 |
| NciI | CCSGG | 2 cut(s) | 75, 495 |
| NdeI | CATATG | 1 cut(s) | 286 |
| NdeII | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| NlaIII | CATG | 6 cut(s) | 156, 321, 842, 854, 923, 974 |
| NlaIV | GGNNCC | 3 cut(s) | 221, 1050, 1125 |
| NmuCI | GTSAC | 3 cut(s) | 110, 206, 575 |
| NspI | RCATGY | 2 cut(s) | 156, 854 |
| OliI | CACNNNNGTG | 1 cut(s) | 545 |
| PaeI | GCATGC | 1 cut(s) | 156 |
| PagI | TCATGA | 1 cut(s) | 970 |
| PaqCI | CACCTGC | 1 cut(s) | 1165 |
| PceI | AGGCCT | 2 cut(s) | 184, 1004 |
| PctI | GAATGC | 1 cut(s) | 529 |
| PfeI | GAWTC | 3 cut(s) | 741, 939, 1138 |
| PleI | GAGTC | 2 cut(s) | 574, 610 |
| PpsI | GAGTC | 2 cut(s) | 574, 610 |
| Psp6I | CCWGG | 3 cut(s) | 323, 1093, 1126 |
| PspFI | CCCAGC | 2 cut(s) | 406, 800 |
| PspGI | CCWGG | 3 cut(s) | 323, 1093, 1126 |
| PspN4I | GGNNCC | 3 cut(s) | 221, 1050, 1125 |
| PspPI | GGNCC | 3 cut(s) | 321, 734, 865 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 61, 93 |
| PstI | CTGCAG | 1 cut(s) | 182 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1277 |
| PsuI | RGATCY | 1 cut(s) | 859 |
| PvuII | CAGCTG | 1 cut(s) | 898 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 2 cut(s) | 545, 668 |
| SaqAI | TTAA | 3 cut(s) | 62, 935, 1288 |
| Sau3AI | GATC | 6 cut(s) | 22, 90, 533, 750, 819, 859 |
| Sau96I | GGNCC | 3 cut(s) | 321, 734, 865 |
| SchI | GAGTC | 2 cut(s) | 575, 611 |
| ScrFI | CCNGG | 5 cut(s) | 75, 325, 495, 1095, 1128 |
| SduI | GDGCHC | 2 cut(s) | 222, 793 |
| SexAI | ACCWGGT | 1 cut(s) | 1093 |
| SfaNI | GCATC | 3 cut(s) | 247, 472, 499 |
| SfcI | CTRYAG | 2 cut(s) | 178, 543 |
| SinI | GGWCC | 2 cut(s) | 321, 734 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 545, 668 |
| SphI | GCATGC | 1 cut(s) | 156 |
| Sse9I | AATT | 6 cut(s) | 56, 189, 279, 417, 475, 512 |
| SseBI | AGGCCT | 2 cut(s) | 184, 1004 |
| SspMI | CTAG | 1 cut(s) | 630 |
| StuI | AGGCCT | 2 cut(s) | 184, 1004 |
| StyD4I | CCNGG | 5 cut(s) | 73, 323, 493, 1093, 1126 |
| TaaI | ACNGT | 4 cut(s) | 85, 234, 544, 1279 |
| TasI | AATT | 6 cut(s) | 56, 189, 279, 417, 475, 512 |
| TatI | WGTACW | 1 cut(s) | 135 |
| TfiI | GAWTC | 3 cut(s) | 741, 939, 1138 |
| Tru1I | TTAA | 3 cut(s) | 62, 935, 1288 |
| Tru9I | TTAA | 3 cut(s) | 62, 935, 1288 |
| TscAI | CASTG | 2 cut(s) | 547, 829 |
| TseFI | GTSAC | 3 cut(s) | 110, 206, 575 |
| Tsp45I | GTSAC | 3 cut(s) | 110, 206, 575 |
| TspDTI | ATGAA | 9 cut(s) | 17, 21, 185, 368, 373, 799, 860, 908, 1124 |
| TspRI | CASTG | 2 cut(s) | 547, 829 |
| VpaK11BI | GGWCC | 2 cut(s) | 321, 734 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 886, 1167 |
| XceI | RCATGY | 2 cut(s) | 156, 854 |
| XspI | CTAG | 1 cut(s) | 630 |