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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2725 |
| Acc36I | ACCTGC | 4 cut(s) | 1487, 2194, 2725, 2860 |
| Acc65I | GGTACC | 1 cut(s) | 184 |
| AccB1I | GGYRCC | 2 cut(s) | 184, 2957 |
| AclWI | GGATC | 9 cut(s) | 92, 338, 351, 1551, 1573, 1586, 1731, 1744, 1941 |
| AcoI | YGGCCR | 1 cut(s) | 2776 |
| AcuI | CTGAAG | 1 cut(s) | 2111 |
| AcyI | GRCGYC | 1 cut(s) | 2428 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 181, 206, 736, 1106, 2084, 2591, 2592, 2729, 2954 |
| AflIII | ACRYGT | 1 cut(s) | 1692 |
| AjnI | CCWGG | 5 cut(s) | 1732, 1812, 1907, 2686, 2897 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1592, 1624 |
| Alw21I | GWGCWC | 1 cut(s) | 2353 |
| Alw26I | GTCTC | 1 cut(s) | 1892 |
| AlwI | GGATC | 9 cut(s) | 92, 338, 351, 1551, 1573, 1586, 1731, 1744, 1941 |
| AoxI | GGCC | 9 cut(s) | 758, 764, 1768, 2086, 2265, 2562, 2660, 2776, 2817 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2418, 2450 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1367 |
| Asp718I | GGTACC | 1 cut(s) | 184 |
| AspA2I | CCTAGG | 3 cut(s) | 53, 299, 2297 |
| AspS9I | GGNCC | 6 cut(s) | 296, 1905, 2086, 2294, 2895, 2945 |
| AsuC2I | CCSGG | 1 cut(s) | 2079 |
| AsuHPI | GGTGA | 8 cut(s) | 253, 668, 751, 1115, 1445, 1451, 1624, 2405 |
| AsuNHI | GCTAGC | 1 cut(s) | 422 |
| AvaII | GGWCC | 5 cut(s) | 296, 1905, 2294, 2895, 2945 |
| AvrII | CCTAGG | 3 cut(s) | 53, 299, 2297 |
| AxyI | CCTNAGG | 1 cut(s) | 1089 |
| BalI | TGGCCA | 1 cut(s) | 2778 |
| BamHI | GGATCC | 3 cut(s) | 343, 1578, 1736 |
| BanI | GGYRCC | 2 cut(s) | 184, 2957 |
| Bbv12I | GWGCWC | 1 cut(s) | 2353 |
| BbvCI | CCTCAGC | 1 cut(s) | 1539 |
| BceAI | ACGGC | 1 cut(s) | 745 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 321, 355 |
| BciT130I | CCWGG | 5 cut(s) | 1734, 1814, 1909, 2688, 2899 |
| BciVI | GTATCC | 1 cut(s) | 2631 |
| BclI | TGATCA | 1 cut(s) | 108 |
| BcnI | CCSGG | 1 cut(s) | 2079 |
| BcoDI | GTCTC | 1 cut(s) | 1892 |
| BfmI | CTRYAG | 1 cut(s) | 2613 |
| BfuAI | ACCTGC | 4 cut(s) | 1487, 2194, 2725, 2860 |
| BfuI | GTATCC | 1 cut(s) | 2631 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2825 |
| BglII | AGATCT | 1 cut(s) | 1399 |
| BlnI | CCTAGG | 3 cut(s) | 53, 299, 2297 |
| BlpI | GCTNAGC | 2 cut(s) | 981, 2025 |
| BmcAI | AGTACT | 2 cut(s) | 2125, 2938 |
| Bme1390I | CCNGG | 6 cut(s) | 1734, 1814, 1909, 2079, 2688, 2899 |
| Bme18I | GGWCC | 5 cut(s) | 296, 1905, 2294, 2895, 2945 |
| BmgT120I | GGNCC | 6 cut(s) | 296, 1905, 2086, 2294, 2895, 2945 |
| BmrFI | CCNGG | 6 cut(s) | 1734, 1814, 1909, 2079, 2688, 2899 |
| BmsI | GCATC | 7 cut(s) | 217, 1012, 1818, 1831, 2056, 2083, 2143 |
| BmtI | GCTAGC | 1 cut(s) | 426 |
| BpmI | CTGGAG | 1 cut(s) | 1470 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1134, 1539, 1721 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 981, 2025 |
| BpuEI | CTTGAG | 3 cut(s) | 1512, 2112, 2179 |
| BpuMI | CCSGG | 1 cut(s) | 2079 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1338 |
| BsaHI | GRCGYC | 1 cut(s) | 2428 |
| BsaJI | CCNNGG | 7 cut(s) | 53, 188, 299, 761, 1169, 1382, 2297 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 552, 582, 1468, 1498 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 181, 206, 736, 1106, 2084, 2591, 2592, 2729, 2954 |
| Bse1I | ACTGG | 6 cut(s) | 30, 427, 582, 1487, 2389, 2395 |
| Bse21I | CCTNAGG | 1 cut(s) | 1089 |
| Bse3DI | GCAATG | 4 cut(s) | 332, 544, 2586, 2625 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1338 |
| BseBI | CCWGG | 5 cut(s) | 1734, 1814, 1909, 2688, 2899 |
| BseDI | CCNNGG | 7 cut(s) | 53, 188, 299, 761, 1169, 1382, 2297 |
| BseJI | GATNNNNATC | 1 cut(s) | 1338 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 181, 206, 736, 1106, 2084, 2591, 2592, 2729, 2954 |
| BseMI | GCAATG | 4 cut(s) | 332, 544, 2586, 2625 |
| BseMII | CTCAG | 8 cut(s) | 93, 315, 858, 948, 972, 1065, 1530, 2016 |
| BseNI | ACTGG | 6 cut(s) | 30, 427, 582, 1487, 2389, 2395 |
| BseRI | GAGGAG | 2 cut(s) | 866, 1081 |
| BseYI | CCCAGC | 1 cut(s) | 2747 |
| BsgI | GTGCAG | 3 cut(s) | 1080, 1643, 2838 |
| BshFI | GGCC | 9 cut(s) | 760, 766, 1770, 2088, 2267, 2564, 2662, 2778, 2819 |
| BshNI | GGYRCC | 2 cut(s) | 184, 2957 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2353 |
| BsiSI | CCGG | 1 cut(s) | 2078 |
| BslFI | GGGAC | 2 cut(s) | 2439, 2931 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 181, 206, 736, 1106, 2084, 2591, 2592, 2729, 2954 |
| BsmAI | GTCTC | 1 cut(s) | 1892 |
| BsmFI | GGGAC | 2 cut(s) | 2439, 2931 |
| BsmI | GAATGC | 2 cut(s) | 2113, 2254 |
| BsnI | GGCC | 9 cut(s) | 760, 766, 1770, 2088, 2267, 2564, 2662, 2778, 2819 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2353 |
| Bsp1407I | TGTACA | 1 cut(s) | 279 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 981, 2025 |
| BspANI | GGCC | 9 cut(s) | 760, 766, 1770, 2088, 2267, 2564, 2662, 2778, 2819 |
| BspCNI | CTCAG | 8 cut(s) | 94, 316, 859, 949, 973, 1066, 1531, 2017 |
| BspHI | TCATGA | 1 cut(s) | 1968 |
| BspMI | ACCTGC | 4 cut(s) | 1487, 2194, 2725, 2860 |
| BspOI | GCTAGC | 1 cut(s) | 426 |
| BspPI | GGATC | 9 cut(s) | 92, 338, 351, 1551, 1573, 1586, 1731, 1744, 1941 |
| BspT107I | GGYRCC | 2 cut(s) | 184, 2957 |
| BsrDI | GCAATG | 4 cut(s) | 332, 544, 2586, 2625 |
| BsrGI | TGTACA | 1 cut(s) | 279 |
| BsrI | ACTGG | 6 cut(s) | 30, 427, 582, 1487, 2389, 2395 |
| BssECI | CCNNGG | 7 cut(s) | 53, 188, 299, 761, 1169, 1382, 2297 |
| BssNI | GRCGYC | 1 cut(s) | 2428 |
| BssT1I | CCWWGG | 5 cut(s) | 53, 299, 1169, 1382, 2297 |
| Bst2UI | CCWGG | 5 cut(s) | 1734, 1814, 1909, 2688, 2899 |
| Bst4CI | ACNGT | 7 cut(s) | 277, 751, 1044, 1744, 1789, 2039, 2208 |
| Bst6I | CTCTTC | 8 cut(s) | 257, 809, 956, 1004, 1215, 1317, 1349, 2666 |
| BstACI | GRCGYC | 1 cut(s) | 2428 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2489 |
| BstAUI | TGTACA | 1 cut(s) | 279 |
| BstC8I | GCNNGC | 5 cut(s) | 424, 2408, 2412, 2652, 2780 |
| BstDSI | CCRYGG | 1 cut(s) | 761 |
| BstMAI | GTCTC | 1 cut(s) | 1892 |
| BstNI | CCWGG | 5 cut(s) | 1734, 1814, 1909, 2688, 2899 |
| BstNSI | RCATGY | 3 cut(s) | 1696, 2414, 2445 |
| BstSCI | CCNGG | 6 cut(s) | 1732, 1812, 1907, 2077, 2686, 2897 |
| BstSFI | CTRYAG | 1 cut(s) | 2613 |
| BstX2I | RGATCY | 7 cut(s) | 97, 343, 1399, 1543, 1578, 1736, 1933 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 238 |
| BstYI | RGATCY | 7 cut(s) | 97, 343, 1399, 1543, 1578, 1736, 1933 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1089 |
| BsuI | GTATCC | 1 cut(s) | 2631 |
| BsuRI | GGCC | 9 cut(s) | 760, 766, 1770, 2088, 2267, 2564, 2662, 2778, 2819 |
| BtgI | CCRYGG | 1 cut(s) | 761 |
| BtgZI | GCGATG | 1 cut(s) | 2544 |
| BtsI | GCAGTG | 1 cut(s) | 1243 |
| BtsIMutI | CAGTG | 3 cut(s) | 747, 1243, 2035 |
| BveI | ACCTGC | 4 cut(s) | 1487, 2194, 2725, 2860 |
| Cac8I | GCNNGC | 5 cut(s) | 424, 2408, 2412, 2652, 2780 |
| CciI | TCATGA | 1 cut(s) | 1968 |
| Cfr13I | GGNCC | 6 cut(s) | 296, 1905, 2086, 2294, 2895, 2945 |
| CseI | GACGC | 1 cut(s) | 2436 |
| CsiI | ACCWGGT | 1 cut(s) | 1907 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 52, 87, 2755, 2790 |
| EaeI | YGGCCR | 1 cut(s) | 2776 |
| Eam1104I | CTCTTC | 8 cut(s) | 257, 809, 956, 1004, 1215, 1317, 1349, 2666 |
| EarI | CTCTTC | 8 cut(s) | 257, 809, 956, 1004, 1215, 1317, 1349, 2666 |
| Eco130I | CCWWGG | 5 cut(s) | 53, 299, 1169, 1382, 2297 |
| Eco147I | AGGCCT | 2 cut(s) | 2564, 2662 |
| Eco47I | GGWCC | 5 cut(s) | 296, 1905, 2294, 2895, 2945 |
| Eco57I | CTGAAG | 1 cut(s) | 2111 |
| Eco81I | CCTNAGG | 1 cut(s) | 1089 |
| EcoO109I | RGGNCCY | 2 cut(s) | 296, 2086 |
| EcoRII | CCWGG | 5 cut(s) | 1732, 1812, 1907, 2686, 2897 |
| EcoT14I | CCWWGG | 5 cut(s) | 53, 299, 1169, 1382, 2297 |
| EcoT22I | ATGCAT | 1 cut(s) | 1027 |
| ErhI | CCWWGG | 5 cut(s) | 53, 299, 1169, 1382, 2297 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 769, 801, 937, 969, 969, 1001 |
| FaqI | GGGAC | 2 cut(s) | 2439, 2931 |
| FauNDI | CATATG | 2 cut(s) | 699, 1870 |
| FbaI | TGATCA | 1 cut(s) | 108 |
| GsaI | CCCAGC | 1 cut(s) | 2751 |
| GsuI | CTGGAG | 1 cut(s) | 1470 |
| HaeIII | GGCC | 9 cut(s) | 760, 766, 1770, 2088, 2267, 2564, 2662, 2778, 2819 |
| HapII | CCGG | 1 cut(s) | 2078 |
| HgaI | GACGC | 1 cut(s) | 2436 |
| Hin1I | GRCGYC | 1 cut(s) | 2428 |
| HindIII | AAGCTT | 2 cut(s) | 315, 783 |
| HinfI | GANTC | 8 cut(s) | 49, 895, 1250, 1262, 1316, 1339, 2467, 2499 |
| HpaII | CCGG | 1 cut(s) | 2078 |
| HphI | GGTGA | 8 cut(s) | 253, 668, 751, 1115, 1445, 1451, 1624, 2405 |
| Hpy166II | GTNNAC | 6 cut(s) | 280, 440, 591, 635, 1123, 2868 |
| Hpy8I | GTNNAC | 6 cut(s) | 280, 440, 591, 635, 1123, 2868 |
| HpyCH4III | ACNGT | 7 cut(s) | 277, 751, 1044, 1744, 1789, 2039, 2208 |
| Hsp92I | GRCGYC | 1 cut(s) | 2428 |
| KpnI | GGTACC | 1 cut(s) | 188 |
| Ksp22I | TGATCA | 1 cut(s) | 108 |
| LmnI | GCTCC | 7 cut(s) | 493, 578, 1114, 1725, 2164, 2403, 2725 |
| LweI | GCATC | 7 cut(s) | 217, 1012, 1818, 1831, 2056, 2083, 2143 |
| MabI | ACCWGGT | 1 cut(s) | 1907 |
| MaeIII | GTNAC | 2 cut(s) | 704, 1375 |
| MfeI | CAATTG | 3 cut(s) | 1863, 2001, 2096 |
| MflI | RGATCY | 7 cut(s) | 97, 343, 1399, 1543, 1578, 1736, 1933 |
| MhlI | GDGCHC | 1 cut(s) | 2353 |
| MlsI | TGGCCA | 1 cut(s) | 2778 |
| MluNI | TGGCCA | 1 cut(s) | 2778 |
| MlyI | GAGTC | 2 cut(s) | 904, 1244 |
| MmeI | TCCRAC | 2 cut(s) | 1290, 1590 |
| Mox20I | TGGCCA | 1 cut(s) | 2778 |
| Mph1103I | ATGCAT | 1 cut(s) | 1027 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1367 |
| MscI | TGGCCA | 1 cut(s) | 2778 |
| MseI | TTAA | 5 cut(s) | 60, 180, 213, 357, 753 |
| MslI | CAYNNNNRTG | 5 cut(s) | 236, 640, 2151, 2358, 2555 |
| Msp20I | TGGCCA | 1 cut(s) | 2778 |
| MspI | CCGG | 1 cut(s) | 2078 |
| MspR9I | CCNGG | 6 cut(s) | 1734, 1814, 1909, 2079, 2688, 2899 |
| MunI | CAATTG | 3 cut(s) | 1863, 2001, 2096 |
| Mva1269I | GAATGC | 2 cut(s) | 2113, 2254 |
| MvaI | CCWGG | 5 cut(s) | 1734, 1814, 1909, 2688, 2899 |
| NciI | CCSGG | 1 cut(s) | 2079 |
| NdeI | CATATG | 2 cut(s) | 699, 1870 |
| NheI | GCTAGC | 1 cut(s) | 422 |
| NsiI | ATGCAT | 1 cut(s) | 1027 |
| NspI | RCATGY | 3 cut(s) | 1696, 2414, 2445 |
| PaeI | GCATGC | 1 cut(s) | 2414 |
| PagI | TCATGA | 1 cut(s) | 1968 |
| PaqCI | CACCTGC | 1 cut(s) | 2725 |
| PceI | AGGCCT | 2 cut(s) | 2564, 2662 |
| PciI | ACATGT | 1 cut(s) | 1692 |
| PctI | GAATGC | 2 cut(s) | 2113, 2254 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1367 |
| PfeI | GAWTC | 6 cut(s) | 49, 1262, 1316, 1339, 2467, 2499 |
| PfoI | TCCNGGA | 4 cut(s) | 1732, 1812, 2077, 2897 |
| PleI | GAGTC | 2 cut(s) | 903, 1244 |
| PpsI | GAGTC | 2 cut(s) | 903, 1244 |
| PpuMI | RGGWCCY | 1 cut(s) | 296 |
| PscI | ACATGT | 1 cut(s) | 1692 |
| Psp5II | RGGWCCY | 1 cut(s) | 296 |
| Psp6I | CCWGG | 5 cut(s) | 1732, 1812, 1907, 2686, 2897 |
| PspFI | CCCAGC | 1 cut(s) | 2747 |
| PspGI | CCWGG | 5 cut(s) | 1732, 1812, 1907, 2686, 2897 |
| PspPI | GGNCC | 6 cut(s) | 296, 1905, 2086, 2294, 2895, 2945 |
| PspPPI | RGGWCCY | 1 cut(s) | 296 |
| PsuI | RGATCY | 7 cut(s) | 97, 343, 1399, 1543, 1578, 1736, 1933 |
| RseI | CAYNNNNRTG | 5 cut(s) | 236, 640, 2151, 2358, 2555 |
| SaqAI | TTAA | 5 cut(s) | 60, 180, 213, 357, 753 |
| Sau96I | GGNCC | 6 cut(s) | 296, 1905, 2086, 2294, 2895, 2945 |
| ScaI | AGTACT | 2 cut(s) | 2125, 2938 |
| SchI | GAGTC | 2 cut(s) | 904, 1244 |
| ScrFI | CCNGG | 6 cut(s) | 1734, 1814, 1909, 2079, 2688, 2899 |
| SduI | GDGCHC | 1 cut(s) | 2353 |
| SexAI | ACCWGGT | 1 cut(s) | 1907 |
| SfaNI | GCATC | 7 cut(s) | 217, 1012, 1818, 1831, 2056, 2083, 2143 |
| SfcI | CTRYAG | 1 cut(s) | 2613 |
| SinI | GGWCC | 5 cut(s) | 296, 1905, 2294, 2895, 2945 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 236, 640, 2151, 2358, 2555 |
| SmlI | CTYRAG | 3 cut(s) | 1527, 2127, 2158 |
| SmoI | CTYRAG | 3 cut(s) | 1527, 2127, 2158 |
| SphI | GCATGC | 1 cut(s) | 2414 |
| SseBI | AGGCCT | 2 cut(s) | 2564, 2662 |
| SspI | AATATT | 1 cut(s) | 133 |
| StuI | AGGCCT | 2 cut(s) | 2564, 2662 |
| StyD4I | CCNGG | 6 cut(s) | 1732, 1812, 1907, 2077, 2686, 2897 |
| StyI | CCWWGG | 5 cut(s) | 53, 299, 1169, 1382, 2297 |
| TaaI | ACNGT | 7 cut(s) | 277, 751, 1044, 1744, 1789, 2039, 2208 |
| TaqI | TCGA | 1 cut(s) | 1248 |
| TatI | WGTACW | 4 cut(s) | 279, 2123, 2867, 2936 |
| TfiI | GAWTC | 6 cut(s) | 49, 1262, 1316, 1339, 2467, 2499 |
| Tru1I | TTAA | 5 cut(s) | 60, 180, 213, 357, 753 |
| Tru9I | TTAA | 5 cut(s) | 60, 180, 213, 357, 753 |
| TscAI | CASTG | 3 cut(s) | 754, 1243, 2042 |
| TspRI | CASTG | 3 cut(s) | 754, 1243, 2042 |
| VpaK11BI | GGWCC | 5 cut(s) | 296, 1905, 2294, 2895, 2945 |
| XbaI | TCTAGA | 2 cut(s) | 94, 473 |
| XceI | RCATGY | 3 cut(s) | 1696, 2414, 2445 |
| XmaJI | CCTAGG | 3 cut(s) | 53, 299, 2297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1367 |
| ZrmI | AGTACT | 2 cut(s) | 2125, 2938 |
| Zsp2I | ATGCAT | 1 cut(s) | 1027 |