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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 56 |
| Acc36I | ACCTGC | 2 cut(s) | 56, 1000 |
| AclWI | GGATC | 5 cut(s) | 633, 638, 933, 1161, 1174 |
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcuI | CTGAAG | 2 cut(s) | 1023, 1156 |
| AflII | CTTAAG | 1 cut(s) | 731 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgsI | TTSAA | 5 cut(s) | 202, 299, 679, 703, 790 |
| AjnI | CCWGG | 2 cut(s) | 848, 1072 |
| Alw21I | GWGCWC | 1 cut(s) | 730 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 5 cut(s) | 633, 638, 933, 1161, 1174 |
| AoxI | GGCC | 4 cut(s) | 570, 685, 769, 858 |
| ApeKI | GCWGC | 2 cut(s) | 509, 563 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 889, 921 |
| AspA2I | CCTAGG | 1 cut(s) | 238 |
| AspS9I | GGNCC | 4 cut(s) | 54, 910, 957, 1148 |
| AsuHPI | GGTGA | 3 cut(s) | 361, 529, 1093 |
| AvaII | GGWCC | 4 cut(s) | 54, 910, 957, 1148 |
| AvrII | CCTAGG | 1 cut(s) | 238 |
| BalI | TGGCCA | 1 cut(s) | 572 |
| BamHI | GGATCC | 1 cut(s) | 1166 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 675, 707 |
| Bbv12I | GWGCWC | 1 cut(s) | 730 |
| BbvI | GCAGC | 2 cut(s) | 521, 575 |
| BccI | CCATC | 3 cut(s) | 161, 179, 770 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 368, 402 |
| BciT130I | CCWGG | 2 cut(s) | 850, 1074 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 239, 453, 773 |
| BfmI | CTRYAG | 2 cut(s) | 63, 276 |
| BfrI | CTTAAG | 1 cut(s) | 731 |
| BfuAI | ACCTGC | 2 cut(s) | 56, 1000 |
| BisI | GCNGC | 2 cut(s) | 510, 564 |
| BlnI | CCTAGG | 1 cut(s) | 238 |
| BlsI | GCNGC | 2 cut(s) | 511, 565 |
| Bme1390I | CCNGG | 2 cut(s) | 850, 1074 |
| Bme18I | GGWCC | 4 cut(s) | 54, 910, 957, 1148 |
| BmgT120I | GGNCC | 4 cut(s) | 54, 910, 957, 1148 |
| BmiI | GGNNCC | 3 cut(s) | 55, 191, 1168 |
| BmrFI | CCNGG | 2 cut(s) | 850, 1074 |
| BmsI | GCATC | 4 cut(s) | 387, 398, 823, 999 |
| Bpu10I | CCTNAGC | 1 cut(s) | 921 |
| BsaJI | CCNNGG | 4 cut(s) | 238, 567, 849, 867 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 968, 998 |
| Bse1I | ACTGG | 2 cut(s) | 573, 1168 |
| BseBI | CCWGG | 2 cut(s) | 850, 1074 |
| BseDI | CCNNGG | 4 cut(s) | 238, 567, 849, 867 |
| BseGI | GGATG | 3 cut(s) | 10, 714, 946 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 2 cut(s) | 573, 1168 |
| BseRI | GAGGAG | 2 cut(s) | 54, 152 |
| BseXI | GCAGC | 2 cut(s) | 521, 575 |
| BseYI | CCCAGC | 1 cut(s) | 512 |
| BsgI | GTGCAG | 1 cut(s) | 423 |
| BshFI | GGCC | 4 cut(s) | 572, 687, 771, 860 |
| BsiHKAI | GWGCWC | 1 cut(s) | 730 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 4 cut(s) | 572, 687, 771, 860 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp143I | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| Bsp19I | CCATGG | 1 cut(s) | 867 |
| BspANI | GGCC | 4 cut(s) | 572, 687, 771, 860 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspLI | GGNNCC | 3 cut(s) | 55, 191, 1168 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspMI | ACCTGC | 2 cut(s) | 56, 1000 |
| BspPI | GGATC | 5 cut(s) | 633, 638, 933, 1161, 1174 |
| BspQI | GCTCTTC | 1 cut(s) | 785 |
| BspTI | CTTAAG | 1 cut(s) | 731 |
| BsrI | ACTGG | 2 cut(s) | 573, 1168 |
| BssECI | CCNNGG | 4 cut(s) | 238, 567, 849, 867 |
| BssMI | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| BssT1I | CCWWGG | 3 cut(s) | 238, 567, 867 |
| Bst2UI | CCWGG | 2 cut(s) | 850, 1074 |
| Bst6I | CTCTTC | 2 cut(s) | 64, 785 |
| BstAFI | CTTAAG | 1 cut(s) | 731 |
| BstC8I | GCNNGC | 1 cut(s) | 689 |
| BstDEI | CTNAG | 4 cut(s) | 195, 393, 921, 1025 |
| BstDSI | CCRYGG | 1 cut(s) | 867 |
| BstF5I | GGATG | 3 cut(s) | 10, 714, 946 |
| BstKTI | GATC | 5 cut(s) | 354, 628, 646, 928, 1169 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 569 |
| BstNI | CCWGG | 2 cut(s) | 850, 1074 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSCI | CCNGG | 2 cut(s) | 848, 1072 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 276 |
| BstV1I | GCAGC | 2 cut(s) | 521, 575 |
| BstX2I | RGATCY | 3 cut(s) | 643, 925, 1166 |
| BstYI | RGATCY | 3 cut(s) | 643, 925, 1166 |
| BsuRI | GGCC | 4 cut(s) | 572, 687, 771, 860 |
| BtgI | CCRYGG | 1 cut(s) | 867 |
| BtsCI | GGATG | 3 cut(s) | 10, 714, 946 |
| BveI | ACCTGC | 2 cut(s) | 56, 1000 |
| Cac8I | GCNNGC | 1 cut(s) | 689 |
| Cfr13I | GGNCC | 4 cut(s) | 54, 910, 957, 1148 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 287, 322 |
| CviAII | CATG | 3 cut(s) | 116, 404, 868 |
| DdeI | CTNAG | 4 cut(s) | 195, 393, 921, 1025 |
| DpnI | GATC | 5 cut(s) | 353, 627, 645, 927, 1168 |
| DpnII | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 2 cut(s) | 64, 785 |
| EarI | CTCTTC | 2 cut(s) | 64, 785 |
| Eco130I | CCWWGG | 3 cut(s) | 238, 567, 867 |
| Eco47I | GGWCC | 4 cut(s) | 54, 910, 957, 1148 |
| Eco57I | CTGAAG | 2 cut(s) | 1023, 1156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 54 |
| EcoRII | CCWGG | 2 cut(s) | 848, 1072 |
| EcoT14I | CCWWGG | 3 cut(s) | 238, 567, 867 |
| EcoT22I | ATGCAT | 3 cut(s) | 117, 222, 391 |
| ErhI | CCWWGG | 3 cut(s) | 238, 567, 867 |
| FaeI | CATG | 3 cut(s) | 119, 407, 871 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 551, 583, 659, 691 |
| FatI | CATG | 3 cut(s) | 115, 403, 867 |
| Fnu4HI | GCNGC | 2 cut(s) | 510, 564 |
| FokI | GGATG | 3 cut(s) | 17, 721, 953 |
| Fsp4HI | GCNGC | 2 cut(s) | 510, 564 |
| FspBI | CTAG | 3 cut(s) | 239, 453, 773 |
| GluI | GCNGC | 2 cut(s) | 510, 564 |
| GsaI | CCCAGC | 1 cut(s) | 516 |
| HaeIII | GGCC | 4 cut(s) | 572, 687, 771, 860 |
| Hin1II | CATG | 3 cut(s) | 119, 407, 871 |
| HincII | GTYRAC | 2 cut(s) | 409, 809 |
| HindII | GTYRAC | 2 cut(s) | 409, 809 |
| HindIII | AAGCTT | 1 cut(s) | 464 |
| HinfI | GANTC | 3 cut(s) | 128, 161, 753 |
| HphI | GGTGA | 3 cut(s) | 361, 529, 1093 |
| Hpy166II | GTNNAC | 3 cut(s) | 409, 809, 1050 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 166 |
| Hpy188III | TCNNGA | 3 cut(s) | 424, 703, 1151 |
| Hpy8I | GTNNAC | 3 cut(s) | 409, 809, 1050 |
| HpyAV | CCTTC | 8 cut(s) | 385, 514, 677, 938, 970, 973, 1081, 1180 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 569 |
| HpyF3I | CTNAG | 4 cut(s) | 195, 393, 921, 1025 |
| Hsp92II | CATG | 3 cut(s) | 119, 407, 871 |
| Kzo9I | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| LguI | GCTCTTC | 1 cut(s) | 785 |
| LmnI | GCTCC | 1 cut(s) | 947 |
| Lsp1109I | GCAGC | 2 cut(s) | 521, 575 |
| LweI | GCATC | 4 cut(s) | 387, 398, 823, 999 |
| MaeI | CTAG | 3 cut(s) | 239, 453, 773 |
| MaeIII | GTNAC | 2 cut(s) | 671, 987 |
| MalI | GATC | 5 cut(s) | 353, 627, 645, 927, 1168 |
| MboI | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| MboII | GAAGA | 3 cut(s) | 51, 185, 802 |
| MflI | RGATCY | 3 cut(s) | 643, 925, 1166 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MlsI | TGGCCA | 1 cut(s) | 572 |
| MluCI | AATT | 5 cut(s) | 210, 230, 294, 367, 1064 |
| MluNI | TGGCCA | 1 cut(s) | 572 |
| MlyI | GAGTC | 2 cut(s) | 137, 170 |
| MmeI | TCCRAC | 3 cut(s) | 730, 858, 935 |
| MnlI | CCTC | 9 cut(s) | 32, 67, 73, 130, 148, 237, 481, 699, 797 |
| Mox20I | TGGCCA | 1 cut(s) | 572 |
| Mph1103I | ATGCAT | 3 cut(s) | 117, 222, 391 |
| MscI | TGGCCA | 1 cut(s) | 572 |
| MseI | TTAA | 6 cut(s) | 15, 462, 468, 722, 732, 1059 |
| MslI | CAYNNNNRTG | 1 cut(s) | 447 |
| Msp20I | TGGCCA | 1 cut(s) | 572 |
| MspA1I | CMGCKG | 3 cut(s) | 512, 821, 894 |
| MspCI | CTTAAG | 1 cut(s) | 731 |
| MspR9I | CCNGG | 2 cut(s) | 850, 1074 |
| MvaI | CCWGG | 2 cut(s) | 850, 1074 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 569 |
| NcoI | CCATGG | 1 cut(s) | 867 |
| NdeII | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| NlaIII | CATG | 3 cut(s) | 119, 407, 871 |
| NlaIV | GGNNCC | 3 cut(s) | 55, 191, 1168 |
| NmuCI | GTSAC | 1 cut(s) | 671 |
| NsiI | ATGCAT | 3 cut(s) | 117, 222, 391 |
| NspI | RCATGY | 1 cut(s) | 407 |
| PaqCI | CACCTGC | 1 cut(s) | 56 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 1 cut(s) | 785 |
| PfeI | GAWTC | 1 cut(s) | 753 |
| PfoI | TCCNGGA | 1 cut(s) | 1072 |
| PkrI | GCNGC | 2 cut(s) | 511, 565 |
| PleI | GAGTC | 2 cut(s) | 136, 169 |
| PpsI | GAGTC | 2 cut(s) | 136, 169 |
| PpuMI | RGGWCCY | 1 cut(s) | 54 |
| PscI | ACATGT | 1 cut(s) | 403 |
| Psp5II | RGGWCCY | 1 cut(s) | 54 |
| Psp6I | CCWGG | 2 cut(s) | 848, 1072 |
| PspFI | CCCAGC | 1 cut(s) | 512 |
| PspGI | CCWGG | 2 cut(s) | 848, 1072 |
| PspN4I | GGNNCC | 3 cut(s) | 55, 191, 1168 |
| PspPI | GGNCC | 4 cut(s) | 54, 910, 957, 1148 |
| PspPPI | RGGWCCY | 1 cut(s) | 54 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PsuI | RGATCY | 3 cut(s) | 643, 925, 1166 |
| PvuII | CAGCTG | 3 cut(s) | 512, 821, 894 |
| RseI | CAYNNNNRTG | 1 cut(s) | 447 |
| SapI | GCTCTTC | 1 cut(s) | 785 |
| SaqAI | TTAA | 6 cut(s) | 15, 462, 468, 722, 732, 1059 |
| SatI | GCNGC | 2 cut(s) | 510, 564 |
| Sau3AI | GATC | 5 cut(s) | 351, 625, 643, 925, 1166 |
| Sau96I | GGNCC | 4 cut(s) | 54, 910, 957, 1148 |
| SchI | GAGTC | 2 cut(s) | 137, 170 |
| ScrFI | CCNGG | 2 cut(s) | 850, 1074 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SfaNI | GCATC | 4 cut(s) | 387, 398, 823, 999 |
| SfcI | CTRYAG | 2 cut(s) | 63, 276 |
| SinI | GGWCC | 4 cut(s) | 54, 910, 957, 1148 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 447 |
| SmlI | CTYRAG | 1 cut(s) | 731 |
| SmoI | CTYRAG | 1 cut(s) | 731 |
| Sse9I | AATT | 5 cut(s) | 210, 230, 294, 367, 1064 |
| SspMI | CTAG | 3 cut(s) | 239, 453, 773 |
| StyD4I | CCNGG | 2 cut(s) | 848, 1072 |
| StyI | CCWWGG | 3 cut(s) | 238, 567, 867 |
| TaqI | TCGA | 1 cut(s) | 378 |
| TasI | AATT | 5 cut(s) | 210, 230, 294, 367, 1064 |
| TfiI | GAWTC | 1 cut(s) | 753 |
| Tru1I | TTAA | 6 cut(s) | 15, 462, 468, 722, 732, 1059 |
| Tru9I | TTAA | 6 cut(s) | 15, 462, 468, 722, 732, 1059 |
| TseFI | GTSAC | 1 cut(s) | 671 |
| TseI | GCWGC | 2 cut(s) | 509, 563 |
| Tsp45I | GTSAC | 1 cut(s) | 671 |
| TspDTI | ATGAA | 7 cut(s) | 33, 260, 696, 952, 957, 1100, 1170 |
| Vha464I | CTTAAG | 1 cut(s) | 731 |
| VpaK11BI | GGWCC | 4 cut(s) | 54, 910, 957, 1148 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 874 |
| XmaJI | CCTAGG | 1 cut(s) | 238 |
| XspI | CTAG | 3 cut(s) | 239, 453, 773 |
| Zsp2I | ATGCAT | 3 cut(s) | 117, 222, 391 |