Rh2CG354800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000005
Physical Location & Seq
Reverse (-)
48024319 .. 48025238
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG354800.1

Sequence Viewer

Length: 537 bp
ATGGATGCTGCAGATAATAGGGCAAGAGAGGTTGTAGCTGTGAAAGAGAAGTTGGCTGAAGAACTTAGGGAAAGGTTAGCTCAATCCAAGCAGAATAAGAGATATAGGGGTGAAGACAGTTCTAGCAGATTTACTCCAGCTGAGAAGGGCAAAAGACCTGTTGAGGCTGCAAAAGTGAATAGGAGGGGGGAAGAAACCAAAGGAGCCAAGCTTAAGGAGGCCGTGAGGGAGTCTGCAATCAGGAATCAGCTTGGACTGTGGTTTGAGAAGAATTCTAAGCACAAGGTTGAGGTCAATTGTCAATGGGACTGCCCATTTAGATTGTATGCTAGCATTTCAAGGGGTAAGGGTCCAACTTTGATTATCAGGACTTTGAACAACAAGCGCATATGTTCTCAAGTGGAAACAAGCCATTTCTTGGATTACAACAGGATTGCAACAGAGGTGCAAGAAGATCTGCTGGTGGATAAGAACTGGTCTAGAGCTGGCATCCATAGTCACATAGAGAAGAAATACAAGTTGGATGTGGGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

178

Amino Acids

20.49

Weight (kDa)

9.68

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 70 - 117 1e-07 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000005)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02991 FvH4_1g02992 FvH4_1g02993 FvH4_1g09981 FvH4_1g09982 FvH4_1g10352 FvH4_1g10353 FvH4_1g21221 FvH4_1g28543 FvH4_1g28550 FvH4_1g29131 FvH4_1g29132 FvH4_1g29251 FvH4_2g04622 FvH4_2g09291 FvH4_2g11355 FvH4_2g11356 FvH4_2g12831 FvH4_2g14530 FvH4_2g14540 FvH4_2g39082 FvH4_2g39083 FvH4_3g07850 FvH4_3g09781 FvH4_3g20431 FvH4_3g20761 FvH4_3g22341 FvH4_3g24801 FvH4_3g31622 FvH4_3g34182 FvH4_3g39962 FvH4_4g01730 FvH4_4g05150 FvH4_4g07521 FvH4_4g08120 FvH4_4g08121 FvH4_4g08122 FvH4_4g09132 FvH4_4g10462 FvH4_4g22472 FvH4_4g22472 FvH4_4g33232 FvH4_5g13980 FvH4_5g20181 FvH4_5g24521 FvH4_5g27365 FvH4_5g30881 FvH4_5g34114 FvH4_5g38701 FvH4_6g09061 FvH4_6g09062 FvH4_6g10601 FvH4_6g18391 FvH4_6g19713 FvH4_6g23004 FvH4_6g23005 FvH4_6g25412 FvH4_6g25413 FvH4_6g29311 FvH4_6g31092 FvH4_6g32521 FvH4_6g32522 FvH4_6g33604 FvH4_6g33604 FvH4_6g33604 FvH4_6g34391 FvH4_6g37590 FvH4_6g38831 FvH4_6g39831 FvH4_6g39832 FvH4_6g42260 FvH4_6g43711 FvH4_7g07733 FvH4_7g09970 FvH4_7g15751
prunus_persica Prupe.1G066000_v2.0.a1 Prupe.1G164400_v2.0.a1 Prupe.1G164500_v2.0.a1 Prupe.1G215100_v2.0.a1 Prupe.3G123400_v2.0.a1 Prupe.6G181000_v2.0.a1 Prupe.6G235300_v2.0.a1 Prupe.7G029200_v2.0.a1 Prupe.8G015400_v2.0.a1
pyrus_communis pycom06g03310 pycom06g08030 pycom06g08040 pycom06g11190 pycom07g15880 pycom09g14040 pycom09g15470 pycom09g17060 pycom11g08630 pycom16g22860 pycom16g26130
rosa_chinensis RchiOBHm_Chr1g0322181 RchiOBHm_Chr1g0352511 RchiOBHm_Chr1g0352521 RchiOBHm_Chr2g0087761 RchiOBHm_Chr2g0095791 RchiOBHm_Chr2g0143141 RchiOBHm_Chr2g0143151 RchiOBHm_Chr2g0150401 RchiOBHm_Chr3g0464951 RchiOBHm_Chr3g0477051 RchiOBHm_Chr3g0494501 RchiOBHm_Chr3g0494581 RchiOBHm_Chr4g0392221 RchiOBHm_Chr4g0394101 RchiOBHm_Chr4g0416081 RchiOBHm_Chr5g0049571 RchiOBHm_Chr5g0079631 RchiOBHm_Chr5g0079641 RchiOBHm_Chr6g0264981 RchiOBHm_Chr6g0266931 RchiOBHm_Chr6g0276491 RchiOBHm_Chr7g0185171 RchiOBHm_Chr7g0185181 RchiOBHm_Chr7g0223891 RchiOBHm_Chr7g0237981
rosa_laevigata RLG00000001483 RLG00000001684 RLG00000001879 RLG00000002009 RLG00000002128 RLG00000002613 RLG00000002687 RLG00000002790 RLG00000002906 RLG00000002936 RLG00000007558 RLG00000007641 RLG00000007848 RLG00000007868 RLG00000008661 RLG00000009016 RLG00000009602 RLG00000010861 RLG00000012632 RLG00000012633 RLG00000012928 RLG00000013121 RLG00000013672 RLG00000013749 RLG00000013997 RLG00000014069 RLG00000014448 RLG00000015845 RLG00000016770 RLG00000016981 RLG00000017145 RLG00000018274 RLG00000018426 RLG00000018838 RLG00000018839 RLG00000018883 RLG00000019028 RLG00000019402 RLG00000019509 RLG00000019526 RLG00000020136 RLG00000020161 RLG00000020241 RLG00000021333 RLG00000023389 RLG00000025321 RLG00000027104 RLG00000027141 RLG00000028844 RLG00000029072 RLG00000029659 RLG00000029904 RLG00000030216 RLG00000030412 RLG00000031924 RLG00000033003 RLG00000033448 RLG00000033675 RLG00000033748 RLG00000033927 RLG00000034174 RLG00000034642 RLG00000034908 RLG00000035291 RLG00000035466 RLG00000035467 RLG00000035468 RLG00000035907 RLG00000036013
rosa_multiflora Rmu_co7976238.1_g000001 Rmu_co8004754.1_g000001 Rmu_co8036536.1_g000001 Rmu_co8050666.1_g000001 Rmu_co8067010.1_g000001 Rmu_co8067872.1_g000001 Rmu_co8131086.1_g000001 Rmu_co8205126.1_g000001 Rmu_co8206378.1_g000001 Rmu_co8224378.1_g000001 Rmu_co8268647.1_g000001 Rmu_co8286989.1_g000001 Rmu_co8287161.1_g000001 Rmu_co8328101.1_g000001 Rmu_co8351829.1_g000001 Rmu_co8351829.1_g000002 Rmu_co8372295.1_g000001 Rmu_co8403523.1_g000001 Rmu_sc0000081.1_g000001 Rmu_sc0000091.1_g000009 Rmu_sc0000151.1_g000015 Rmu_sc0000151.1_g000016 Rmu_sc0000262.1_g000001 Rmu_sc0000285.1_g000011 Rmu_sc0000292.1_g000006 Rmu_sc0000292.1_g000008 Rmu_sc0000312.1_g000018 Rmu_sc0000363.1_g000056 Rmu_sc0000367.1_g000027 Rmu_sc0000383.1_g000001 Rmu_sc0000384.1_g000017 Rmu_sc0000414.1_g000011 Rmu_sc0000414.1_g000012 Rmu_sc0000435.1_g000078 Rmu_sc0000487.1_g000057 Rmu_sc0000509.1_g000006 Rmu_sc0000509.1_g000008 Rmu_sc0000530.1_g000014 Rmu_sc0000530.1_g000031 Rmu_sc0000530.1_g000033 Rmu_sc0000546.1_g000082 Rmu_sc0000552.1_g000021 Rmu_sc0000574.1_g000010 Rmu_sc0000600.1_g000024 Rmu_sc0000640.1_g000008 Rmu_sc0000666.1_g000016 Rmu_sc0000680.1_g000021 Rmu_sc0000712.1_g000005 Rmu_sc0000720.1_g000012 Rmu_sc0000757.1_g000008 Rmu_sc0000800.1_g000005 Rmu_sc0000815.1_g000004 Rmu_sc0000854.1_g000068 Rmu_sc0000898.1_g000039 Rmu_sc0000912.1_g000011 Rmu_sc0000935.1_g000055 Rmu_sc0000953.1_g000034 Rmu_sc0000999.1_g000015 Rmu_sc0001004.1_g000022 Rmu_sc0001043.1_g000012 Rmu_sc0001043.1_g000013 Rmu_sc0001054.1_g000013 Rmu_sc0001075.1_g000052 Rmu_sc0001082.1_g000015 Rmu_sc0001207.1_g000109 Rmu_sc0001266.1_g000011 Rmu_sc0001377.1_g000022 Rmu_sc0001403.1_g000004 Rmu_sc0001416.1_g000013 Rmu_sc0001464.1_g000009 Rmu_sc0001501.1_g000001 Rmu_sc0001552.1_g000015 Rmu_sc0001644.1_g000017 Rmu_sc0001653.1_g000020 Rmu_sc0001685.1_g000077 Rmu_sc0001750.1_g000007 Rmu_sc0001782.1_g000016 Rmu_sc0001803.1_g000016 Rmu_sc0001879.1_g000030 Rmu_sc0001879.1_g000031 Rmu_sc0001880.1_g000030 Rmu_sc0001880.1_g000031 Rmu_sc0001890.1_g000009 Rmu_sc0001965.1_g000004 Rmu_sc0002016.1_g000036 Rmu_sc0002106.1_g000009 Rmu_sc0002260.1_g000039 Rmu_sc0002260.1_g000041 Rmu_sc0002310.1_g000028 Rmu_sc0002480.1_g000002 Rmu_sc0002522.1_g000060 Rmu_sc0002539.1_g000109 Rmu_sc0002539.1_g000110 Rmu_sc0002542.1_g000015 Rmu_sc0002579.1_g000004 Rmu_sc0002798.1_g000035 Rmu_sc0002858.1_g000002 Rmu_sc0002934.1_g000029 Rmu_sc0002934.1_g000030 Rmu_sc0002999.1_g000027 Rmu_sc0003012.1_g000010 Rmu_sc0003062.1_g000004 Rmu_sc0003070.1_g000001 Rmu_sc0003093.1_g000015 Rmu_sc0003139.1_g000045 Rmu_sc0003200.1_g000009 Rmu_sc0003266.1_g000008 Rmu_sc0003266.1_g000009 Rmu_sc0003342.1_g000023 Rmu_sc0003392.1_g000015 Rmu_sc0003430.1_g000016 Rmu_sc0003525.1_g000021 Rmu_sc0003690.1_g000015 Rmu_sc0003693.1_g000016 Rmu_sc0003693.1_g000017 Rmu_sc0003693.1_g000018 Rmu_sc0003720.1_g000013 Rmu_sc0003743.1_g000012 Rmu_sc0003759.1_g000003 Rmu_sc0003768.1_g000001 Rmu_sc0003876.1_g000030 Rmu_sc0003876.1_g000033 Rmu_sc0003878.1_g000022 Rmu_sc0003914.1_g000019 Rmu_sc0004065.1_g000001 Rmu_sc0004084.1_g000052 Rmu_sc0004133.1_g000003 Rmu_sc0004133.1_g000019 Rmu_sc0004133.1_g000020 Rmu_sc0004133.1_g000021 Rmu_sc0004325.1_g000025 Rmu_sc0004592.1_g000011 Rmu_sc0004890.1_g000003 Rmu_sc0004911.1_g000011 Rmu_sc0004989.1_g000010 Rmu_sc0005132.1_g000038 Rmu_sc0005258.1_g000004 Rmu_sc0005305.1_g000005 Rmu_sc0005332.1_g000002 Rmu_sc0005332.1_g000003 Rmu_sc0005365.1_g000008 Rmu_sc0005379.1_g000001 Rmu_sc0005409.1_g000002 Rmu_sc0005410.1_g000016 Rmu_sc0005410.1_g000017 Rmu_sc0005445.1_g000005 Rmu_sc0005576.1_g000004 Rmu_sc0005641.1_g000003 Rmu_sc0005747.1_g000020 Rmu_sc0005877.1_g000003 Rmu_sc0006031.1_g000015 Rmu_sc0006059.1_g000012 Rmu_sc0006157.1_g000016 Rmu_sc0006326.1_g000042 Rmu_sc0006453.1_g000021 Rmu_sc0006565.1_g000006 Rmu_sc0006670.1_g000020 Rmu_sc0006670.1_g000021 Rmu_sc0006675.1_g000010 Rmu_sc0006704.1_g000004 Rmu_sc0006766.1_g000008 Rmu_sc0006792.1_g000033 Rmu_sc0006792.1_g000034 Rmu_sc0006798.1_g000008 Rmu_sc0006908.1_g000011 Rmu_sc0007017.1_g000013 Rmu_sc0007017.1_g000014 Rmu_sc0007069.1_g000010 Rmu_sc0007138.1_g000002 Rmu_sc0007138.1_g000003 Rmu_sc0007192.1_g000015 Rmu_sc0007369.1_g000001 Rmu_sc0007543.1_g000007 Rmu_sc0007602.1_g000004 Rmu_sc0007602.1_g000006 Rmu_sc0007680.1_g000003 Rmu_sc0007791.1_g000004 Rmu_sc0007860.1_g000009 Rmu_sc0007863.1_g000002 Rmu_sc0007877.1_g000015 Rmu_sc0007920.1_g000033 Rmu_sc0007920.1_g000034 Rmu_sc0008383.1_g000008 Rmu_sc0008564.1_g000004 Rmu_sc0008564.1_g000005 Rmu_sc0008577.1_g000012 Rmu_sc0008629.1_g000003 Rmu_sc0008791.1_g000001 Rmu_sc0008791.1_g000002 Rmu_sc0009053.1_g000007 Rmu_sc0009165.1_g000013 Rmu_sc0009165.1_g000014 Rmu_sc0009178.1_g000008 Rmu_sc0009286.1_g000002 Rmu_sc0009358.1_g000001 Rmu_sc0009409.1_g000016 Rmu_sc0009704.1_g000003 Rmu_sc0009725.1_g000002 Rmu_sc0009794.1_g000002 Rmu_sc0010090.1_g000007 Rmu_sc0010244.1_g000006 Rmu_sc0010244.1_g000007 Rmu_sc0010313.1_g000019 Rmu_sc0010409.1_g000009 Rmu_sc0010409.1_g000010 Rmu_sc0010432.1_g000011 Rmu_sc0010483.1_g000020 Rmu_sc0010616.1_g000006 Rmu_sc0010624.1_g000009 Rmu_sc0010708.1_g000002 Rmu_sc0010708.1_g000004 Rmu_sc0010723.1_g000003 Rmu_sc0010723.1_g000004 Rmu_sc0010822.1_g000006 Rmu_sc0010822.1_g000008 Rmu_sc0010833.1_g000002 Rmu_sc0010876.1_g000001 Rmu_sc0011133.1_g000009 Rmu_sc0011701.1_g000013 Rmu_sc0012012.1_g000002 Rmu_sc0012149.1_g000008 Rmu_sc0012733.1_g000004 Rmu_sc0012856.1_g000007 Rmu_sc0012856.1_g000009 Rmu_sc0013549.1_g000001 Rmu_sc0013571.1_g000003 Rmu_sc0013607.1_g000002 Rmu_sc0014815.1_g000011 Rmu_sc0014912.1_g000005 Rmu_sc0015289.1_g000004 Rmu_sc0015321.1_g000001 Rmu_sc0015410.1_g000005 Rmu_sc0015495.1_g000001 Rmu_sc0015743.1_g000012 Rmu_sc0016901.1_g000001 Rmu_sc0017349.1_g000001 Rmu_sc0017404.1_g000001 Rmu_sc0017805.1_g000002 Rmu_sc0018124.1_g000001 Rmu_sc0018721.1_g000001 Rmu_sc0018907.1_g000002 Rmu_sc0018965.1_g000001 Rmu_sc0019238.1_g000002 Rmu_sc0020427.1_g000004 Rmu_sc0020598.1_g000002 Rmu_sc0020598.1_g000004 Rmu_sc0021403.1_g000001 Rmu_sc0021403.1_g000002 Rmu_sc0022313.1_g000005 Rmu_sc0022685.1_g000001 Rmu_sc0023367.1_g000003 Rmu_sc0023861.1_g000001 Rmu_sc0027514.1_g000001 Rmu_sc0027682.1_g000001 Rmu_sc0029375.1_g000001 Rmu_sc0030196.1_g000002 Rmu_sc0031685.1_g000001 Rmu_sc0032993.1_g000001 Rmu_sc0033213.1_g000001 Rmu_sc0033434.1_g000003 Rmu_sc0033434.1_g000005 Rmu_sc0034294.1_g000001 Rmu_sc0037038.1_g000001 Rmu_sc0038673.1_g000002 Rmu_sc0039153.1_g000001 Rmu_sc0039586.1_g000001 Rmu_sc0040029.1_g000001 Rmu_ssc0000004.1_g000009 Rmu_ssc0000004.1_g000010 Rmu_ssc0000004.1_g000012 Rmu_ssc0000010.1_g000013 Rmu_ssc0000010.1_g000014 Rmu_ssc0000050.1_g000043 Rmu_ssc0000050.1_g000044 Rmu_ssc0000091.1_g000018 Rmu_ssc0000093.1_g000002 Rmu_ssc0000120.1_g000007 Rmu_ssc0000120.1_g000008 Rmu_ssc0000127.1_g000033 Rmu_ssc0000128.1_g000020 Rmu_ssc0000244.1_g000038 Rmu_ssc0000255.1_g000049 Rmu_ssc0000308.1_g000033 Rmu_ssc0000311.1_g000023 Rmu_ssc0000377.1_g000045 Rmu_ssc0000386.1_g000064 Rmu_ssc0000386.1_g000065 Rmu_ssc0000423.1_g000003 Rmu_ssc0000456.1_g000009 Rmu_ssc0000480.1_g000010
rosa_roxburghii Rroxscaffold_1G00004330 Rroxscaffold_1G00004340 Rroxscaffold_1G00011970 Rroxscaffold_1G00013990 Rroxscaffold_1G00018360 Rroxscaffold_1G00023230 Rroxscaffold_1G00023240 Rroxscaffold_1G00025590 Rroxscaffold_1G00026970 Rroxscaffold_1G00032860 Rroxscaffold_1G00040380 Rroxscaffold_1G00062370 Rroxscaffold_1G00063510 Rroxscaffold_2G00077740 Rroxscaffold_2G00079040 Rroxscaffold_2G00083480 Rroxscaffold_2G00087860 Rroxscaffold_2G00097200 Rroxscaffold_2G00097630 Rroxscaffold_2G00098720 Rroxscaffold_2G00099740 Rroxscaffold_2G00113800 Rroxscaffold_2G00120990 Rroxscaffold_2G00121000 Rroxscaffold_2G00133540 Rroxscaffold_2G00140560 Rroxscaffold_2G00142660 Rroxscaffold_2G00144200 Rroxscaffold_2G00144210 Rroxscaffold_3G00225720 Rroxscaffold_3G00227610 Rroxscaffold_3G00227620 Rroxscaffold_3G00228010 Rroxscaffold_3G00229150 Rroxscaffold_3G00236150 Rroxscaffold_3G00236160 Rroxscaffold_3G00237130 Rroxscaffold_3G00253290 Rroxscaffold_3G00268560 Rroxscaffold_3G00268570 Rroxscaffold_4G00285280 Rroxscaffold_4G00285290 Rroxscaffold_4G00289600 Rroxscaffold_4G00296220 Rroxscaffold_4G00300830 Rroxscaffold_4G00301780 Rroxscaffold_4G00308130 Rroxscaffold_4G00315220 Rroxscaffold_4G00322580 Rroxscaffold_4G00322670 Rroxscaffold_5G00340740 Rroxscaffold_5G00348950 Rroxscaffold_5G00350450 Rroxscaffold_5G00360400 Rroxscaffold_5G00361600 Rroxscaffold_5G00361610 Rroxscaffold_5G00364090 Rroxscaffold_5G00364110 Rroxscaffold_5G00364120 Rroxscaffold_5G00364270 Rroxscaffold_5G00371090 Rroxscaffold_6G00393990 Rroxscaffold_6G00399610 Rroxscaffold_6G00401980 Rroxscaffold_6G00405540 Rroxscaffold_6G00411560 Rroxscaffold_6G00423230 Rroxscaffold_7G00163640 Rroxscaffold_7G00164750 Rroxscaffold_7G00188670 Rroxscaffold_7G00192060 Rroxscaffold_7G00193740 Rroxscaffold_7G00197270
rosa_rugosa Rorug01G0050700 Rorug01G0077800 Rorug01G0082800 Rorug01G0082900 Rorug01G0086800 Rorug01G0111500 Rorug01G0122200 Rorug01G0136300.1 Rorug01G0220800 Rorug01G0220900 Rorug01G0241800 Rorug01G0345100 Rorug02G0053200 Rorug02G0148200 Rorug02G0323600 Rorug02G0378700 Rorug02G0448600 Rorug02G0448600 Rorug02G0448600 Rorug02G0448700 Rorug02G0526700 Rorug02G0526700 Rorug03G0010200 Rorug03G0010300 Rorug03G0078700 Rorug03G0191100 Rorug03G0240000 Rorug03G0261200 Rorug03G0287900 Rorug03G0292100 Rorug03G0317700 Rorug03G0317800 Rorug03G0317900 Rorug03G0317900 Rorug03G0350800 Rorug03G0350800 Rorug03G0357200 Rorug04G0010300 Rorug04G0010400 Rorug04G0010500 Rorug04G0051300 Rorug04G0075500 Rorug04G0078100 Rorug04G0090800 Rorug04G0123200 Rorug04G0123200 Rorug04G0133400 Rorug04G0152800 Rorug04G0152900 Rorug04G0153200 Rorug04G0155800 Rorug04G0155900 Rorug04G0155900 Rorug04G0193600 Rorug04G0297200 Rorug05G0045100 Rorug05G0047000 Rorug05G0047100 Rorug05G0047100 Rorug05G0049900 Rorug05G0094200 Rorug05G0164000 Rorug05G0181100 Rorug05G0181200 Rorug05G0196600 Rorug05G0196700 Rorug05G0318800 Rorug05G0363500.1 Rorug05G0373600 Rorug05G0378600 Rorug05G0381200 Rorug05G0381300 Rorug05G0393600 Rorug05G0393700 Rorug05G0489900 Rorug05G0491100.1 Rorug05G0574400 Rorug05G0588800 Rorug05G0588800 Rorug05G0592800 Rorug06G0002700 Rorug06G0037100 Rorug06G0066200 Rorug06G0066300 Rorug06G0250200 Rorug06G0250300 Rorug06G0250300 Rorug06G0250300 Rorug06G0283100 Rorug06G0297600 Rorug06G0347300 Rorug06G0347400 Rorug06G0347500 Rorug06G0426100 Rorug07G0019400 Rorug07G0019500 Rorug07G0231700 Rorug07G0267500 Rorug07G0280000 Rorug07G0280100 Rorug07G0280100 Rorug07G0349000
rosa_samantha Rh1AG020300 Rh1AG078600 Rh1AG090400 Rh1AG121400 Rh1AG157800 Rh1AG238700 Rh1AG287200 Rh1AG303900 Rh1BG010700 Rh1BG060100 Rh1BG093000 Rh1BG304400 Rh1BG304500 Rh1BG350800 Rh1CG118300 Rh1CG173200 Rh1CG191900 Rh1DG014900 Rh1DG032300 Rh1DG058800 Rh1DG066800 Rh1DG088800 Rh1DG130600 Rh1DG183200 Rh1DG183300 Rh1DG201800 Rh1DG336800 Rh2AG032800 Rh2AG151400 Rh2AG255500 Rh2AG429100 Rh2AG431500 Rh2AG455300 Rh2AG455400 Rh2AG458600 Rh2AG476000 Rh2AG529000 Rh2AG542600 Rh2AG542700 Rh2AG651000 Rh2BG236300 Rh2BG272100 Rh2BG346800 Rh2BG661400 Rh2CG032400 Rh2CG032500 Rh2CG032600 Rh2CG156700 Rh2CG317400 Rh2CG354800 Rh2CG354900 Rh2CG414700 Rh2CG442700 Rh2CG461500 Rh2CG611300 Rh2CG615800 Rh2DG032400 Rh2DG092900 Rh2DG477000 Rh2DG556400 Rh2DG577300 Rh2DG659500 Rh3AG123600 Rh3AG194900 Rh3AG206300 Rh3BG282700 Rh3CG012600 Rh3CG130200 Rh3CG130400 Rh3CG219800 Rh3CG329500 Rh3CG370400 Rh3DG234700 Rh3DG251300 Rh3DG320500 Rh3DG371200 Rh4AG072100 Rh4AG072900 Rh4AG074700 Rh4BG008500 Rh4BG036100 Rh4BG179500 Rh4BG181600 Rh4BG256600 Rh4BG256800 Rh4BG384500 Rh4CG048000 Rh4CG078400 Rh4CG193900 Rh4DG098800 Rh4DG168000 Rh4DG172100 Rh4DG176900 Rh4DG178100 Rh4DG235200 Rh4DG248500 Rh4DG251200 Rh5AG368600 Rh5BG135000 Rh5BG251100 Rh5BG282600 Rh5BG359600 Rh5CG268500 Rh5CG338300 Rh5CG338400 Rh5CG348300 Rh5CG348800 Rh5CG403200 Rh5CG403300 Rh5CG480600 Rh5CG491600 Rh5DG042500 Rh5DG118100 Rh5DG118200 Rh5DG136100 Rh5DG171800 Rh5DG205700 Rh5DG205800 Rh5DG259100 Rh5DG275300 Rh5DG335800 Rh5DG345900 Rh5DG380300 Rh5DG448400 Rh5DG473300 Rh5DG482700 Rh6AG087300 Rh6AG099800 Rh6AG194100 Rh6AG231200 Rh6AG362700 Rh6BG073600 Rh6BG155900 Rh6CG075900 Rh6CG076000 Rh6CG088800 Rh6CG107400 Rh6CG234400 Rh6CG243500 Rh6CG273000 Rh6CG322700 Rh6CG337500 Rh6CG409600 Rh6CG410200 Rh6CG414800 Rh6CG446300 Rh6CG481200 Rh6DG072700 Rh6DG081700 Rh6DG083100 Rh6DG130200 Rh6DG232900 Rh6DG266200 Rh7AG265400 Rh7AG449900 Rh7BG364100 Rh7CG007200 Rh7CG049200 Rh7CG375500 Rh7CG397300 Rh7DG071700 Rh7DG071800 Rh7DG227800 Rh7DG248700 Rh7DG274200 Rh7DG286400 Rh7DG286700 Rh7DG330300 Rh7DG346000 Rh7DG381700 Rh7DG387500 Rh7DG461600
rosa_wichuraiana Rw0G001710 Rw0G004210 Rw0G013790 Rw0G017630 Rw0G022400 Rw1G005410 Rw1G007490 Rw1G007550 Rw1G022510 Rw1G030870 Rw1G035720 Rw2G016860 Rw2G022090 Rw2G023100 Rw2G024570 Rw2G024690 Rw2G034730 Rw2G035260 Rw2G037250 Rw2G039200 Rw2G041910 Rw2G052580 Rw3G009310 Rw3G009450 Rw3G010450 Rw3G019020 Rw4G008030 Rw4G013190 Rw4G013330 Rw4G014460 Rw4G017920 Rw4G019120 Rw4G028120 Rw5G009630 Rw5G011670 Rw5G027650 Rw5G030500 Rw5G035470 Rw5G036900 Rw5G037450 Rw5G039410 Rw5G041220 Rw5G045560 Rw6G003540 Rw6G007440 Rw6G012070 Rw6G015340 Rw6G018290 Rw6G018460 Rw6G025630 Rw6G026900 Rw6G028350 Rw6G028960 Rw6G043230 Rw7G007640 Rw7G024520 Rw7G031240 Rw7G031560 Rw7G032510 Rw7G037410

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 418
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 418
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 339, 376
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 503, 535
AluBI AGCT 6 cut(s) 38, 80, 140, 211, 250, 485
AluI AGCT 6 cut(s) 38, 80, 140, 211, 250, 485
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 8, 167
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 206
BfaI CTAG 3 cut(s) 123, 330, 480
BfmI CTRYAG 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 454
BisI GCNGC 2 cut(s) 9, 168
BlsI GCNGC 2 cut(s) 10, 169
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 205, 351
BmsI GCATC 1 cut(s) 498
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 479
BseGI GGATG 3 cut(s) 10, 489, 529
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 479
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 454
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 205, 351
BspMAI CTGCAG 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 479
BssMI GATC 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 119, 258
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 331, 487
BstDEI CTNAG 3 cut(s) 65, 141, 276
BstF5I GGATG 3 cut(s) 10, 489, 529
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 1 cut(s) 457
BstMBI GATC 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 10, 489, 529
Cac8I GCNNGC 2 cut(s) 331, 487
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 350
DdeI CTNAG 3 cut(s) 65, 141, 276
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 271
FaiI YATR 6 cut(s) 105, 327, 389, 391, 495, 503
FaqI GGGAC 1 cut(s) 320
FauNDI CATATG 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 9, 168
FokI GGATG 2 cut(s) 17, 476
Fsp4HI GCNGC 2 cut(s) 9, 168
FspBI CTAG 3 cut(s) 123, 330, 480
GlaI GCGC 1 cut(s) 386
GluI GCNGC 2 cut(s) 9, 168
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 221
HhaI GCGC 1 cut(s) 387
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 230, 244
HphI GGTGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 241, 367, 480
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 119, 258
HpyCH4V TGCA 5 cut(s) 11, 170, 236, 437, 448
HpyF3I CTNAG 3 cut(s) 65, 141, 276
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 150, 171, 226, 352, 415, 446, 460, 471
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 498
MaeI CTAG 3 cut(s) 123, 330, 480
MaeIII GTNAC 1 cut(s) 497
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 6 cut(s) 71, 125, 203, 280, 464, 520
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 1 cut(s) 454
MluCI AATT 2 cut(s) 271, 295
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 377, 501
MnlI CCTC 7 cut(s) 22, 157, 177, 211, 219, 283, 436
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 212
MunI CAATTG 1 cut(s) 295
NdeI CATATG 1 cut(s) 389
NdeII GATC 1 cut(s) 454
NheI GCTAGC 1 cut(s) 329
NlaIV GGNNCC 2 cut(s) 205, 351
NmuCI GTSAC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 2 cut(s) 10, 169
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 205, 351
PspPI GGNCC 1 cut(s) 350
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 9, 168
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 239
SfaNI GCATC 1 cut(s) 498
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 212, 396
SmoI CTYRAG 2 cut(s) 212, 396
Sse9I AATT 2 cut(s) 271, 295
SspMI CTAG 3 cut(s) 123, 330, 480
TaaI ACNGT 2 cut(s) 119, 258
TasI AATT 2 cut(s) 271, 295
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 8, 167
Tsp45I GTSAC 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 271
XbaI TCTAGA 1 cut(s) 479
XspI CTAG 3 cut(s) 123, 330, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.