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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 780 |
| Acc65I | GGTACC | 1 cut(s) | 761 |
| AccB1I | GGYRCC | 1 cut(s) | 761 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 576, 823 |
| AccBSI | CCGCTC | 1 cut(s) | 1262 |
| AccI | GTMKAC | 1 cut(s) | 141 |
| AciI | CCGC | 3 cut(s) | 11, 1250, 1260 |
| AclWI | GGATC | 4 cut(s) | 130, 1091, 1104, 1138 |
| AcoI | YGGCCR | 2 cut(s) | 1229, 1257 |
| AcsI | RAATTY | 1 cut(s) | 786 |
| AfaI | GTAC | 1 cut(s) | 763 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 305, 460, 576, 823, 1213 |
| AflII | CTTAAG | 2 cut(s) | 530, 916 |
| AgsI | TTSAA | 9 cut(s) | 70, 80, 149, 178, 235, 595, 912, 936, 1169 |
| AjnI | CCWGG | 1 cut(s) | 1312 |
| Alw21I | GWGCWC | 4 cut(s) | 389, 589, 973, 1368 |
| Alw26I | GTCTC | 1 cut(s) | 1075 |
| AlwI | GGATC | 4 cut(s) | 130, 1091, 1104, 1138 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 576 |
| Ama87I | CYCGRG | 2 cut(s) | 224, 780 |
| AoxI | GGCC | 6 cut(s) | 42, 563, 1229, 1257, 1352, 1376 |
| ApoI | RAATTY | 1 cut(s) | 786 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 404, 507 |
| Asp718I | GGTACC | 1 cut(s) | 761 |
| AspA2I | CCTAGG | 1 cut(s) | 1355 |
| AspS9I | GGNCC | 8 cut(s) | 84, 451, 526, 1105, 1276, 1310, 1352, 1376 |
| AsuC2I | CCSGG | 1 cut(s) | 964 |
| AsuNHI | GCTAGC | 1 cut(s) | 1489 |
| AvaI | CYCGRG | 2 cut(s) | 224, 780 |
| AvaII | GGWCC | 6 cut(s) | 84, 451, 526, 1105, 1276, 1310 |
| AvrII | CCTAGG | 1 cut(s) | 1355 |
| AxyI | CCTNAGG | 1 cut(s) | 1443 |
| BamHI | GGATCC | 1 cut(s) | 1096 |
| BanI | GGYRCC | 1 cut(s) | 761 |
| BanII | GRGCYC | 3 cut(s) | 973, 1320, 1368 |
| BbsI | GAAGAC | 1 cut(s) | 242 |
| Bbv12I | GWGCWC | 4 cut(s) | 389, 589, 973, 1368 |
| BbvCI | CCTCAGC | 1 cut(s) | 1427 |
| BccI | CCATC | 7 cut(s) | 95, 272, 373, 773, 1204, 1267, 1451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 205, 239 |
| BciT130I | CCWGG | 1 cut(s) | 1314 |
| BciVI | GTATCC | 1 cut(s) | 40 |
| BclI | TGATCA | 1 cut(s) | 513 |
| BcnI | CCSGG | 1 cut(s) | 964 |
| BcoDI | GTCTC | 1 cut(s) | 1075 |
| BfaI | CTAG | 6 cut(s) | 105, 186, 849, 1109, 1356, 1490 |
| BfmI | CTRYAG | 3 cut(s) | 46, 321, 1056 |
| BfrI | CTTAAG | 2 cut(s) | 530, 916 |
| BfuI | GTATCC | 1 cut(s) | 40 |
| BglII | AGATCT | 2 cut(s) | 553, 1240 |
| BlnI | CCTAGG | 1 cut(s) | 1355 |
| Bme1390I | CCNGG | 2 cut(s) | 964, 1314 |
| Bme18I | GGWCC | 6 cut(s) | 84, 451, 526, 1105, 1276, 1310 |
| BmeT110I | CYCGRG | 2 cut(s) | 224, 780 |
| BmgT120I | GGNCC | 8 cut(s) | 84, 451, 526, 1105, 1276, 1310, 1352, 1376 |
| BmiI | GGNNCC | 5 cut(s) | 452, 763, 1098, 1278, 1440 |
| BmrFI | CCNGG | 2 cut(s) | 964, 1314 |
| BmrI | ACTGGG | 1 cut(s) | 564 |
| BmsI | GCATC | 3 cut(s) | 172, 245, 325 |
| BmtI | GCTAGC | 1 cut(s) | 1493 |
| BmuI | ACTGGG | 1 cut(s) | 564 |
| BpiI | GAAGAC | 1 cut(s) | 242 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1427, 1452 |
| BpuMI | CCSGG | 1 cut(s) | 964 |
| BsaBI | GATNNNNATC | 1 cut(s) | 259 |
| BsaJI | CCNNGG | 6 cut(s) | 223, 483, 1064, 1101, 1313, 1355 |
| BsaWI | WCCGGW | 1 cut(s) | 1234 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 305, 460, 576, 823, 1213 |
| Bse118I | RCCGGY | 1 cut(s) | 1378 |
| Bse1I | ACTGG | 2 cut(s) | 570, 581 |
| Bse21I | CCTNAGG | 1 cut(s) | 1443 |
| Bse8I | GATNNNNATC | 1 cut(s) | 259 |
| BseBI | CCWGG | 1 cut(s) | 1314 |
| BseDI | CCNNGG | 6 cut(s) | 223, 483, 1064, 1101, 1313, 1355 |
| BseGI | GGATG | 5 cut(s) | 260, 283, 832, 1267, 1462 |
| BseJI | GATNNNNATC | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 305, 460, 576, 823, 1213 |
| BseMII | CTCAG | 2 cut(s) | 1418, 1434 |
| BseNI | ACTGG | 2 cut(s) | 570, 581 |
| BseRI | GAGGAG | 4 cut(s) | 710, 1091, 1229, 1460 |
| BseYI | CCCAGC | 1 cut(s) | 1141 |
| BsgI | GTGCAG | 2 cut(s) | 56, 1200 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1228 |
| BshFI | GGCC | 6 cut(s) | 44, 565, 1231, 1259, 1354, 1378 |
| BshNI | GGYRCC | 1 cut(s) | 761 |
| BsiEI | CGRYCG | 1 cut(s) | 1228 |
| BsiHKAI | GWGCWC | 4 cut(s) | 389, 589, 973, 1368 |
| BsiHKCI | CYCGRG | 2 cut(s) | 224, 780 |
| BsiSI | CCGG | 4 cut(s) | 964, 1046, 1235, 1379 |
| BslFI | GGGAC | 3 cut(s) | 128, 464, 1262 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 305, 460, 576, 823, 1213 |
| BsmAI | GTCTC | 1 cut(s) | 1075 |
| BsmFI | GGGAC | 3 cut(s) | 128, 464, 1262 |
| BsmI | GAATGC | 1 cut(s) | 650 |
| BsnI | GGCC | 6 cut(s) | 44, 565, 1231, 1259, 1354, 1378 |
| BsoBI | CYCGRG | 2 cut(s) | 224, 780 |
| Bsp1286I | GDGCHC | 5 cut(s) | 389, 589, 973, 1320, 1368 |
| Bsp143I | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| BspACI | CCGC | 3 cut(s) | 11, 1250, 1260 |
| BspANI | GGCC | 6 cut(s) | 44, 565, 1231, 1259, 1354, 1378 |
| BspCNI | CTCAG | 2 cut(s) | 1419, 1435 |
| BspHI | TCATGA | 1 cut(s) | 714 |
| BspLI | GGNNCC | 5 cut(s) | 452, 763, 1098, 1278, 1440 |
| BspOI | GCTAGC | 1 cut(s) | 1493 |
| BspPI | GGATC | 4 cut(s) | 130, 1091, 1104, 1138 |
| BspT107I | GGYRCC | 1 cut(s) | 761 |
| BspTI | CTTAAG | 2 cut(s) | 530, 916 |
| BsrBI | CCGCTC | 1 cut(s) | 1262 |
| BsrFI | RCCGGY | 1 cut(s) | 1378 |
| BsrI | ACTGG | 2 cut(s) | 570, 581 |
| BssAI | RCCGGY | 1 cut(s) | 1378 |
| BssECI | CCNNGG | 6 cut(s) | 223, 483, 1064, 1101, 1313, 1355 |
| BssMI | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| BssT1I | CCWWGG | 3 cut(s) | 483, 1101, 1355 |
| Bst2UI | CCWGG | 1 cut(s) | 1314 |
| Bst4CI | ACNGT | 3 cut(s) | 157, 322, 1226 |
| Bst6I | CTCTTC | 1 cut(s) | 713 |
| BstAFI | CTTAAG | 2 cut(s) | 530, 916 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 875, 899, 1178 |
| BstC8I | GCNNGC | 3 cut(s) | 42, 969, 1491 |
| BstDEI | CTNAG | 7 cut(s) | 54, 409, 430, 557, 1427, 1443, 1452 |
| BstDSI | CCRYGG | 1 cut(s) | 1064 |
| BstF5I | GGATG | 5 cut(s) | 260, 283, 832, 1267, 1462 |
| BstKTI | GATC | 8 cut(s) | 125, 263, 516, 556, 1089, 1099, 1133, 1243 |
| BstMAI | GTCTC | 1 cut(s) | 1075 |
| BstMBI | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| BstMCI | CGRYCG | 1 cut(s) | 1228 |
| BstNI | CCWGG | 1 cut(s) | 1314 |
| BstSCI | CCNGG | 2 cut(s) | 962, 1312 |
| BstSFI | CTRYAG | 3 cut(s) | 46, 321, 1056 |
| BstV2I | GAAGAC | 1 cut(s) | 242 |
| BstX2I | RGATCY | 4 cut(s) | 553, 1096, 1130, 1240 |
| BstYI | RGATCY | 4 cut(s) | 553, 1096, 1130, 1240 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1443 |
| BsuI | GTATCC | 1 cut(s) | 40 |
| BsuRI | GGCC | 6 cut(s) | 44, 565, 1231, 1259, 1354, 1378 |
| BtgI | CCRYGG | 1 cut(s) | 1064 |
| BtsCI | GGATG | 5 cut(s) | 260, 283, 832, 1267, 1462 |
| BtsI | GCAGTG | 1 cut(s) | 1260 |
| BtsIMutI | CAGTG | 3 cut(s) | 162, 574, 1260 |
| Cac8I | GCNNGC | 3 cut(s) | 42, 969, 1491 |
| CaiI | CAGNNNCTG | 1 cut(s) | 576 |
| CciI | TCATGA | 1 cut(s) | 714 |
| Cfr10I | RCCGGY | 1 cut(s) | 1378 |
| Cfr13I | GGNCC | 8 cut(s) | 84, 451, 526, 1105, 1276, 1310, 1352, 1376 |
| CseI | GACGC | 1 cut(s) | 1000 |
| Csp6I | GTAC | 1 cut(s) | 762 |
| CviAII | CATG | 3 cut(s) | 91, 302, 715 |
| CviQI | GTAC | 1 cut(s) | 762 |
| DdeI | CTNAG | 7 cut(s) | 54, 409, 430, 557, 1427, 1443, 1452 |
| DpnI | GATC | 8 cut(s) | 124, 262, 515, 555, 1088, 1098, 1132, 1242 |
| DpnII | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| DraI | TTTAAA | 3 cut(s) | 205, 247, 291 |
| EaeI | YGGCCR | 2 cut(s) | 1229, 1257 |
| Eam1104I | CTCTTC | 1 cut(s) | 713 |
| EarI | CTCTTC | 1 cut(s) | 713 |
| Ecl136II | GAGCTC | 2 cut(s) | 971, 1366 |
| Eco130I | CCWWGG | 3 cut(s) | 483, 1101, 1355 |
| Eco147I | AGGCCT | 2 cut(s) | 44, 565 |
| Eco24I | GRGCYC | 3 cut(s) | 973, 1320, 1368 |
| Eco32I | GATATC | 1 cut(s) | 1157 |
| Eco47I | GGWCC | 6 cut(s) | 84, 451, 526, 1105, 1276, 1310 |
| Eco53kI | GAGCTC | 2 cut(s) | 971, 1366 |
| Eco81I | CCTNAGG | 1 cut(s) | 1443 |
| Eco88I | CYCGRG | 2 cut(s) | 224, 780 |
| EcoICRI | GAGCTC | 2 cut(s) | 971, 1366 |
| EcoRII | CCWGG | 1 cut(s) | 1312 |
| EcoRV | GATATC | 1 cut(s) | 1157 |
| EcoT14I | CCWWGG | 3 cut(s) | 483, 1101, 1355 |
| EcoT22I | ATGCAT | 1 cut(s) | 652 |
| EcoT38I | GRGCYC | 3 cut(s) | 973, 1320, 1368 |
| ErhI | CCWWGG | 3 cut(s) | 483, 1101, 1355 |
| FaeI | CATG | 3 cut(s) | 94, 305, 718 |
| FaqI | GGGAC | 3 cut(s) | 128, 464, 1262 |
| FatI | CATG | 3 cut(s) | 90, 301, 714 |
| FauI | CCCGC | 1 cut(s) | 4 |
| FauNDI | CATATG | 1 cut(s) | 364 |
| FbaI | TGATCA | 1 cut(s) | 513 |
| FblI | GTMKAC | 1 cut(s) | 141 |
| FokI | GGATG | 5 cut(s) | 267, 290, 839, 1254, 1469 |
| FriOI | GRGCYC | 3 cut(s) | 973, 1320, 1368 |
| FspBI | CTAG | 6 cut(s) | 105, 186, 849, 1109, 1356, 1490 |
| GsaI | CCCAGC | 1 cut(s) | 1145 |
| HaeIII | GGCC | 6 cut(s) | 44, 565, 1231, 1259, 1354, 1378 |
| HapII | CCGG | 4 cut(s) | 964, 1046, 1235, 1379 |
| HgaI | GACGC | 1 cut(s) | 1000 |
| Hin1II | CATG | 3 cut(s) | 94, 305, 718 |
| HincII | GTYRAC | 2 cut(s) | 477, 732 |
| HindII | GTYRAC | 2 cut(s) | 477, 732 |
| HindIII | AAGCTT | 1 cut(s) | 688 |
| HinfI | GANTC | 7 cut(s) | 295, 392, 598, 1042, 1146, 1165, 1385 |
| HpaII | CCGG | 4 cut(s) | 964, 1046, 1235, 1379 |
| Hpy166II | GTNNAC | 5 cut(s) | 142, 160, 308, 477, 732 |
| Hpy188I | TCNGA | 5 cut(s) | 127, 513, 624, 1037, 1272 |
| Hpy188III | TCNNGA | 4 cut(s) | 595, 715, 1160, 1442 |
| Hpy8I | GTNNAC | 5 cut(s) | 142, 160, 308, 477, 732 |
| Hpy99I | CGWCG | 2 cut(s) | 980, 1206 |
| HpyAV | CCTTC | 5 cut(s) | 555, 730, 829, 1024, 1178 |
| HpyCH4III | ACNGT | 3 cut(s) | 157, 322, 1226 |
| HpyF3I | CTNAG | 7 cut(s) | 54, 409, 430, 557, 1427, 1443, 1452 |
| Hsp92II | CATG | 3 cut(s) | 94, 305, 718 |
| KpnI | GGTACC | 1 cut(s) | 765 |
| Ksp22I | TGATCA | 1 cut(s) | 513 |
| Kzo9I | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| LmnI | GCTCC | 8 cut(s) | 94, 318, 862, 984, 1187, 1363, 1444, 1472 |
| LweI | GCATC | 3 cut(s) | 172, 245, 325 |
| MaeI | CTAG | 6 cut(s) | 105, 186, 849, 1109, 1356, 1490 |
| MaeIII | GTNAC | 2 cut(s) | 572, 989 |
| MalI | GATC | 8 cut(s) | 124, 262, 515, 555, 1088, 1098, 1132, 1242 |
| MbiI | CCGCTC | 1 cut(s) | 1262 |
| MboI | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| MboII | GAAGA | 6 cut(s) | 247, 611, 730, 844, 1250, 1488 |
| MflI | RGATCY | 4 cut(s) | 553, 1096, 1130, 1240 |
| MhlI | GDGCHC | 5 cut(s) | 389, 589, 973, 1320, 1368 |
| MluCI | AATT | 4 cut(s) | 628, 786, 1071, 1173 |
| MlyI | GAGTC | 5 cut(s) | 304, 386, 592, 1155, 1394 |
| MmeI | TCCRAC | 3 cut(s) | 1015, 1341, 1494 |
| Mph1103I | ATGCAT | 1 cut(s) | 652 |
| MroXI | GAANNNNTTC | 2 cut(s) | 404, 507 |
| MseI | TTAA | 9 cut(s) | 204, 246, 290, 531, 606, 645, 708, 917, 1501 |
| MspA1I | CMGCKG | 1 cut(s) | 11 |
| MspCI | CTTAAG | 2 cut(s) | 530, 916 |
| MspI | CCGG | 4 cut(s) | 964, 1046, 1235, 1379 |
| MspR9I | CCNGG | 2 cut(s) | 964, 1314 |
| Mva1269I | GAATGC | 1 cut(s) | 650 |
| MvaI | CCWGG | 1 cut(s) | 1314 |
| NciI | CCSGG | 1 cut(s) | 964 |
| NdeI | CATATG | 1 cut(s) | 364 |
| NdeII | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| NheI | GCTAGC | 1 cut(s) | 1489 |
| NlaIII | CATG | 3 cut(s) | 94, 305, 718 |
| NlaIV | GGNNCC | 5 cut(s) | 452, 763, 1098, 1278, 1440 |
| NmuCI | GTSAC | 1 cut(s) | 572 |
| NsiI | ATGCAT | 1 cut(s) | 652 |
| PaeR7I | CTCGAG | 1 cut(s) | 780 |
| PagI | TCATGA | 1 cut(s) | 714 |
| PceI | AGGCCT | 2 cut(s) | 44, 565 |
| PctI | GAATGC | 1 cut(s) | 650 |
| PdmI | GAANNNNTTC | 2 cut(s) | 404, 507 |
| PfeI | GAWTC | 2 cut(s) | 1042, 1165 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 576, 823 |
| PleI | GAGTC | 5 cut(s) | 303, 386, 592, 1154, 1393 |
| PpsI | GAGTC | 5 cut(s) | 303, 386, 592, 1154, 1393 |
| Psp124BI | GAGCTC | 2 cut(s) | 973, 1368 |
| Psp6I | CCWGG | 1 cut(s) | 1312 |
| PspFI | CCCAGC | 1 cut(s) | 1141 |
| PspGI | CCWGG | 1 cut(s) | 1312 |
| PspN4I | GGNNCC | 5 cut(s) | 452, 763, 1098, 1278, 1440 |
| PspPI | GGNCC | 8 cut(s) | 84, 451, 526, 1105, 1276, 1310, 1352, 1376 |
| PspXI | VCTCGAGB | 1 cut(s) | 780 |
| PstNI | CAGNNNCTG | 1 cut(s) | 576 |
| PsuI | RGATCY | 4 cut(s) | 553, 1096, 1130, 1240 |
| RsaI | GTAC | 1 cut(s) | 763 |
| RsaNI | GTAC | 1 cut(s) | 762 |
| SacI | GAGCTC | 2 cut(s) | 973, 1368 |
| SaqAI | TTAA | 9 cut(s) | 204, 246, 290, 531, 606, 645, 708, 917, 1501 |
| Sau3AI | GATC | 8 cut(s) | 122, 260, 513, 553, 1086, 1096, 1130, 1240 |
| Sau96I | GGNCC | 8 cut(s) | 84, 451, 526, 1105, 1276, 1310, 1352, 1376 |
| SchI | GAGTC | 5 cut(s) | 304, 386, 592, 1155, 1394 |
| ScrFI | CCNGG | 2 cut(s) | 964, 1314 |
| SduI | GDGCHC | 5 cut(s) | 389, 589, 973, 1320, 1368 |
| SfaNI | GCATC | 3 cut(s) | 172, 245, 325 |
| SfcI | CTRYAG | 3 cut(s) | 46, 321, 1056 |
| Sfr274I | CTCGAG | 1 cut(s) | 780 |
| SinI | GGWCC | 6 cut(s) | 84, 451, 526, 1105, 1276, 1310 |
| SlaI | CTCGAG | 1 cut(s) | 780 |
| SmlI | CTYRAG | 3 cut(s) | 530, 780, 916 |
| SmoI | CTYRAG | 3 cut(s) | 530, 780, 916 |
| Sse9I | AATT | 4 cut(s) | 628, 786, 1071, 1173 |
| SseBI | AGGCCT | 2 cut(s) | 44, 565 |
| SsiI | CCGC | 3 cut(s) | 11, 1250, 1260 |
| SspMI | CTAG | 6 cut(s) | 105, 186, 849, 1109, 1356, 1490 |
| SstI | GAGCTC | 2 cut(s) | 973, 1368 |
| StuI | AGGCCT | 2 cut(s) | 44, 565 |
| StyD4I | CCNGG | 2 cut(s) | 962, 1312 |
| StyI | CCWWGG | 3 cut(s) | 483, 1101, 1355 |
| TaaI | ACNGT | 3 cut(s) | 157, 322, 1226 |
| TaqI | TCGA | 3 cut(s) | 781, 941, 1264 |
| TasI | AATT | 4 cut(s) | 628, 786, 1071, 1173 |
| TauI | GCSGC | 2 cut(s) | 1253, 1262 |
| TfiI | GAWTC | 2 cut(s) | 1042, 1165 |
| Tru1I | TTAA | 9 cut(s) | 204, 246, 290, 531, 606, 645, 708, 917, 1501 |
| Tru9I | TTAA | 9 cut(s) | 204, 246, 290, 531, 606, 645, 708, 917, 1501 |
| TscAI | CASTG | 3 cut(s) | 162, 581, 1260 |
| TseFI | GTSAC | 1 cut(s) | 572 |
| Tsp45I | GTSAC | 1 cut(s) | 572 |
| TspDTI | ATGAA | 4 cut(s) | 643, 731, 764, 1187 |
| TspGWI | ACGGA | 1 cut(s) | 22 |
| TspRI | CASTG | 3 cut(s) | 162, 581, 1260 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 576, 823 |
| Vha464I | CTTAAG | 2 cut(s) | 530, 916 |
| VpaK11BI | GGWCC | 6 cut(s) | 84, 451, 526, 1105, 1276, 1310 |
| XapI | RAATTY | 1 cut(s) | 786 |
| XhoI | CTCGAG | 1 cut(s) | 780 |
| XmaJI | CCTAGG | 1 cut(s) | 1355 |
| XmiI | GTMKAC | 1 cut(s) | 141 |
| XmnI | GAANNNNTTC | 2 cut(s) | 404, 507 |
| XspI | CTAG | 6 cut(s) | 105, 186, 849, 1109, 1356, 1490 |
| Zsp2I | ATGCAT | 1 cut(s) | 652 |