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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 511, 1835 |
| AccI | GTMKAC | 1 cut(s) | 1213 |
| AciI | CCGC | 2 cut(s) | 101, 2277 |
| AclWI | GGATC | 3 cut(s) | 293, 779, 1377 |
| AcoI | YGGCCR | 1 cut(s) | 1296 |
| AcsI | RAATTY | 2 cut(s) | 724, 1333 |
| AcuI | CTGAAG | 3 cut(s) | 531, 873, 1719 |
| AfaI | GTAC | 6 cut(s) | 34, 329, 1088, 1457, 1707, 1946 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 275, 1774, 1843, 1982, 2427 |
| AflII | CTTAAG | 1 cut(s) | 1849 |
| AflIII | ACRYGT | 1 cut(s) | 164 |
| AjnI | CCWGG | 1 cut(s) | 2047 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 663, 695 |
| Alw21I | GWGCWC | 1 cut(s) | 1507 |
| Alw26I | GTCTC | 5 cut(s) | 206, 215, 913, 1775, 1882 |
| AlwI | GGATC | 3 cut(s) | 293, 779, 1377 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 695 |
| AoxI | GGCC | 7 cut(s) | 713, 1296, 1481, 2054, 2196, 2342, 2371 |
| ApoI | RAATTY | 2 cut(s) | 724, 1333 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2276, 2308 |
| AspLEI | GCGC | 1 cut(s) | 1320 |
| AspS9I | GGNCC | 6 cut(s) | 4, 608, 683, 1021, 1824, 2197 |
| AsuHPI | GGTGA | 5 cut(s) | 136, 608, 746, 1144, 1775 |
| AsuNHI | GCTAGC | 1 cut(s) | 2252 |
| AvaII | GGWCC | 5 cut(s) | 4, 608, 683, 1021, 1824 |
| BaeGI | GKGCMC | 1 cut(s) | 1691 |
| BauI | CACGAG | 1 cut(s) | 1171 |
| BbsI | GAAGAC | 3 cut(s) | 784, 879, 1917 |
| Bbv12I | GWGCWC | 1 cut(s) | 1507 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1732, 1766 |
| BciT130I | CCWGG | 1 cut(s) | 2049 |
| BclI | TGATCA | 4 cut(s) | 526, 664, 1539, 1968 |
| BcoDI | GTCTC | 5 cut(s) | 206, 215, 913, 1775, 1882 |
| BfaI | CTAG | 9 cut(s) | 36, 1187, 1584, 1698, 1709, 2001, 2040, 2226, 2253 |
| BfmI | CTRYAG | 1 cut(s) | 504 |
| BfrI | CTTAAG | 1 cut(s) | 1849 |
| BfuAI | ACCTGC | 2 cut(s) | 511, 1835 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2053 |
| BglII | AGATCT | 3 cut(s) | 110, 1102, 1903 |
| BmcAI | AGTACT | 1 cut(s) | 1707 |
| Bme1390I | CCNGG | 1 cut(s) | 2049 |
| Bme18I | GGWCC | 5 cut(s) | 4, 608, 683, 1021, 1824 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 608, 683, 1021, 1824, 2197 |
| BmiI | GGNNCC | 2 cut(s) | 964, 1290 |
| BmrFI | CCNGG | 1 cut(s) | 2049 |
| BmsI | GCATC | 4 cut(s) | 273, 2196, 2231, 2372 |
| BmtI | GCTAGC | 1 cut(s) | 2256 |
| BpiI | GAAGAC | 3 cut(s) | 784, 879, 1917 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| Bpu10I | CCTNAGC | 1 cut(s) | 441 |
| BpuEI | CTTGAG | 2 cut(s) | 258, 1238 |
| BsaI | GGTCTC | 1 cut(s) | 913 |
| BsaJI | CCNNGG | 1 cut(s) | 7 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 275, 1774, 1843, 1982, 2427 |
| Bse118I | RCCGGY | 2 cut(s) | 29, 1975 |
| Bse1I | ACTGG | 2 cut(s) | 788, 1598 |
| Bse3DI | GCAATG | 2 cut(s) | 1152, 1677 |
| BseBI | CCWGG | 1 cut(s) | 2049 |
| BseDI | CCNNGG | 1 cut(s) | 7 |
| BseGI | GGATG | 5 cut(s) | 264, 810, 1089, 1228, 1470 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 275, 1774, 1843, 1982, 2427 |
| BseMI | GCAATG | 2 cut(s) | 1152, 1677 |
| BseMII | CTCAG | 5 cut(s) | 432, 747, 1199, 1893, 2343 |
| BseNI | ACTGG | 2 cut(s) | 788, 1598 |
| BseRI | GAGGAG | 4 cut(s) | 191, 395, 398, 1442 |
| BseSI | GKGCMC | 1 cut(s) | 1691 |
| BseYI | CCCAGC | 1 cut(s) | 232 |
| BsgI | GTGCAG | 1 cut(s) | 1813 |
| BshFI | GGCC | 7 cut(s) | 715, 1298, 1483, 2056, 2198, 2344, 2373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1507 |
| BsiSI | CCGG | 2 cut(s) | 30, 1976 |
| BslFI | GGGAC | 1 cut(s) | 1859 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 275, 1774, 1843, 1982, 2427 |
| BsmAI | GTCTC | 5 cut(s) | 206, 215, 913, 1775, 1882 |
| BsmFI | GGGAC | 1 cut(s) | 1859 |
| BsnI | GGCC | 7 cut(s) | 715, 1298, 1483, 2056, 2198, 2344, 2373 |
| Bso31I | GGTCTC | 1 cut(s) | 913 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1507, 1691 |
| Bsp1407I | TGTACA | 1 cut(s) | 1086 |
| BspACI | CCGC | 2 cut(s) | 101, 2277 |
| BspANI | GGCC | 7 cut(s) | 715, 1298, 1483, 2056, 2198, 2344, 2373 |
| BspCNI | CTCAG | 5 cut(s) | 433, 748, 1200, 1892, 2342 |
| BspLI | GGNNCC | 2 cut(s) | 964, 1290 |
| BspMAI | CTGCAG | 1 cut(s) | 508 |
| BspMI | ACCTGC | 2 cut(s) | 511, 1835 |
| BspOI | GCTAGC | 1 cut(s) | 2256 |
| BspPI | GGATC | 3 cut(s) | 293, 779, 1377 |
| BspTI | CTTAAG | 1 cut(s) | 1849 |
| BspTNI | GGTCTC | 1 cut(s) | 913 |
| BsrDI | GCAATG | 2 cut(s) | 1152, 1677 |
| BsrFI | RCCGGY | 2 cut(s) | 29, 1975 |
| BsrGI | TGTACA | 1 cut(s) | 1086 |
| BsrI | ACTGG | 2 cut(s) | 788, 1598 |
| BssAI | RCCGGY | 2 cut(s) | 29, 1975 |
| BssECI | CCNNGG | 1 cut(s) | 7 |
| BssNAI | GTATAC | 1 cut(s) | 1214 |
| BssSI | CACGAG | 1 cut(s) | 1171 |
| BssT1I | CCWWGG | 1 cut(s) | 7 |
| Bst1107I | GTATAC | 1 cut(s) | 1214 |
| Bst2BI | CACGAG | 1 cut(s) | 1171 |
| Bst2UI | CCWGG | 1 cut(s) | 2049 |
| Bst4CI | ACNGT | 2 cut(s) | 365, 1036 |
| Bst6I | CTCTTC | 3 cut(s) | 696, 1631, 2112 |
| BstAFI | CTTAAG | 1 cut(s) | 1849 |
| BstAUI | TGTACA | 1 cut(s) | 1086 |
| BstC8I | GCNNGC | 6 cut(s) | 717, 1668, 1868, 2136, 2211, 2254 |
| BstDEI | CTNAG | 6 cut(s) | 333, 441, 756, 1208, 1879, 2329 |
| BstEII | GGTNACC | 1 cut(s) | 1763 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 273 |
| BstF5I | GGATG | 5 cut(s) | 264, 810, 1089, 1228, 1470 |
| BstHHI | GCGC | 1 cut(s) | 1320 |
| BstMAI | GTCTC | 5 cut(s) | 206, 215, 913, 1775, 1882 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2053, 2219, 2276, 2312 |
| BstNI | CCWGG | 1 cut(s) | 2049 |
| BstNSI | RCATGY | 4 cut(s) | 168, 421, 1609, 1836 |
| BstPI | GGTNACC | 1 cut(s) | 1763 |
| BstSCI | CCNGG | 1 cut(s) | 2047 |
| BstSFI | CTRYAG | 1 cut(s) | 504 |
| BstSLI | GKGCMC | 1 cut(s) | 1691 |
| BstV2I | GAAGAC | 3 cut(s) | 784, 879, 1917 |
| BstX2I | RGATCY | 4 cut(s) | 110, 298, 1102, 1903 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1494 |
| BstYI | RGATCY | 4 cut(s) | 110, 298, 1102, 1903 |
| BstZ17I | GTATAC | 1 cut(s) | 1214 |
| BsuRI | GGCC | 7 cut(s) | 715, 1298, 1483, 2056, 2198, 2344, 2373 |
| BtsCI | GGATG | 5 cut(s) | 264, 810, 1089, 1228, 1470 |
| BtsIMutI | CAGTG | 1 cut(s) | 1605 |
| BveI | ACCTGC | 2 cut(s) | 511, 1835 |
| Cac8I | GCNNGC | 6 cut(s) | 717, 1668, 1868, 2136, 2211, 2254 |
| CaiI | CAGNNNCTG | 1 cut(s) | 695 |
| CfoI | GCGC | 1 cut(s) | 1320 |
| Cfr10I | RCCGGY | 2 cut(s) | 29, 1975 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 608, 683, 1021, 1824, 2197 |
| Csp6I | GTAC | 6 cut(s) | 33, 328, 1087, 1456, 1706, 1945 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1785, 1820, 2284, 2319 |
| CviAII | CATG | 7 cut(s) | 165, 418, 883, 970, 1606, 1833, 1863 |
| CviQI | GTAC | 6 cut(s) | 33, 328, 1087, 1456, 1706, 1945 |
| DdeI | CTNAG | 6 cut(s) | 333, 441, 756, 1208, 1879, 2329 |
| EaeI | YGGCCR | 1 cut(s) | 1296 |
| Eam1104I | CTCTTC | 3 cut(s) | 696, 1631, 2112 |
| EarI | CTCTTC | 3 cut(s) | 696, 1631, 2112 |
| Eco130I | CCWWGG | 1 cut(s) | 7 |
| Eco147I | AGGCCT | 2 cut(s) | 1483, 2344 |
| Eco31I | GGTCTC | 1 cut(s) | 913 |
| Eco32I | GATATC | 1 cut(s) | 2352 |
| Eco47I | GGWCC | 5 cut(s) | 4, 608, 683, 1021, 1824 |
| Eco57I | CTGAAG | 3 cut(s) | 531, 873, 1719 |
| Eco91I | GGTNACC | 1 cut(s) | 1763 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 273 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1824 |
| EcoO65I | GGTNACC | 1 cut(s) | 1763 |
| EcoRI | GAATTC | 1 cut(s) | 724 |
| EcoRII | CCWGG | 1 cut(s) | 2047 |
| EcoRV | GATATC | 1 cut(s) | 2352 |
| EcoT14I | CCWWGG | 1 cut(s) | 7 |
| ErhI | CCWWGG | 1 cut(s) | 7 |
| FaeI | CATG | 7 cut(s) | 168, 421, 886, 973, 1609, 1836, 1866 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 930, 962 |
| FaqI | GGGAC | 1 cut(s) | 1859 |
| FatI | CATG | 7 cut(s) | 164, 417, 882, 969, 1605, 1832, 1862 |
| FauNDI | CATATG | 4 cut(s) | 97, 675, 1091, 1323 |
| FbaI | TGATCA | 4 cut(s) | 526, 664, 1539, 1968 |
| FblI | GTMKAC | 1 cut(s) | 1213 |
| FokI | GGATG | 5 cut(s) | 251, 817, 1096, 1235, 1477 |
| FspBI | CTAG | 9 cut(s) | 36, 1187, 1584, 1698, 1709, 2001, 2040, 2226, 2253 |
| GlaI | GCGC | 1 cut(s) | 1319 |
| GsaI | CCCAGC | 1 cut(s) | 236 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HaeIII | GGCC | 7 cut(s) | 715, 1298, 1483, 2056, 2198, 2344, 2373 |
| HapII | CCGG | 2 cut(s) | 30, 1976 |
| HhaI | GCGC | 1 cut(s) | 1320 |
| Hin1II | CATG | 7 cut(s) | 168, 421, 886, 973, 1609, 1836, 1866 |
| Hin6I | GCGC | 1 cut(s) | 1318 |
| HinP1I | GCGC | 1 cut(s) | 1318 |
| HincII | GTYRAC | 3 cut(s) | 1039, 1395, 1810 |
| HindII | GTYRAC | 3 cut(s) | 1039, 1395, 1810 |
| HindIII | AAGCTT | 3 cut(s) | 1064, 1558, 2110 |
| HinfI | GANTC | 6 cut(s) | 104, 692, 866, 987, 1116, 1169 |
| HpaII | CCGG | 2 cut(s) | 30, 1976 |
| HphI | GGTGA | 5 cut(s) | 136, 608, 746, 1144, 1775 |
| Hpy188I | TCNGA | 9 cut(s) | 697, 730, 892, 986, 992, 1652, 1738, 2085, 2349 |
| HpyAV | CCTTC | 8 cut(s) | 436, 1429, 1720, 1784, 2046, 2171, 2212, 2397 |
| HpyCH4III | ACNGT | 2 cut(s) | 365, 1036 |
| HpyCH4IV | ACGT | 2 cut(s) | 1872, 1943 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2053, 2219, 2276, 2312 |
| HpyF3I | CTNAG | 6 cut(s) | 333, 441, 756, 1208, 1879, 2329 |
| HpySE526I | ACGT | 2 cut(s) | 1872, 1943 |
| Hsp92II | CATG | 7 cut(s) | 168, 421, 886, 973, 1609, 1836, 1866 |
| HspAI | GCGC | 1 cut(s) | 1318 |
| Ksp22I | TGATCA | 4 cut(s) | 526, 664, 1539, 1968 |
| LmnI | GCTCC | 2 cut(s) | 141, 973 |
| LweI | GCATC | 4 cut(s) | 273, 2196, 2231, 2372 |
| MaeI | CTAG | 9 cut(s) | 36, 1187, 1584, 1698, 1709, 2001, 2040, 2226, 2253 |
| MaeII | ACGT | 2 cut(s) | 1872, 1943 |
| MaeIII | GTNAC | 2 cut(s) | 1529, 1763 |
| MflI | RGATCY | 4 cut(s) | 110, 298, 1102, 1903 |
| MhlI | GDGCHC | 2 cut(s) | 1507, 1691 |
| MluCI | AATT | 6 cut(s) | 22, 724, 1333, 1963, 2019, 2416 |
| MlyI | GAGTC | 3 cut(s) | 701, 981, 1163 |
| MmeI | TCCRAC | 4 cut(s) | 936, 1137, 1214, 2405 |
| MseI | TTAA | 9 cut(s) | 129, 585, 762, 1107, 1265, 1850, 1934, 1950, 1980 |
| MspA1I | CMGCKG | 2 cut(s) | 232, 509 |
| MspCI | CTTAAG | 1 cut(s) | 1849 |
| MspI | CCGG | 2 cut(s) | 30, 1976 |
| MspR9I | CCNGG | 1 cut(s) | 2049 |
| MvaI | CCWGG | 1 cut(s) | 2049 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2053, 2219, 2276, 2312 |
| NdeI | CATATG | 4 cut(s) | 97, 675, 1091, 1323 |
| NheI | GCTAGC | 1 cut(s) | 2252 |
| NlaIII | CATG | 7 cut(s) | 168, 421, 886, 973, 1609, 1836, 1866 |
| NlaIV | GGNNCC | 2 cut(s) | 964, 1290 |
| NmeAIII | GCCGAG | 1 cut(s) | 174 |
| NmuCI | GTSAC | 2 cut(s) | 1529, 1763 |
| NspI | RCATGY | 4 cut(s) | 168, 421, 1609, 1836 |
| PceI | AGGCCT | 2 cut(s) | 1483, 2344 |
| PciI | ACATGT | 1 cut(s) | 164 |
| PfeI | GAWTC | 3 cut(s) | 104, 866, 1116 |
| PleI | GAGTC | 3 cut(s) | 700, 981, 1163 |
| PpsI | GAGTC | 3 cut(s) | 700, 981, 1163 |
| PpuMI | RGGWCCY | 1 cut(s) | 1824 |
| PscI | ACATGT | 1 cut(s) | 164 |
| Psp5II | RGGWCCY | 1 cut(s) | 1824 |
| Psp6I | CCWGG | 1 cut(s) | 2047 |
| PspEI | GGTNACC | 1 cut(s) | 1763 |
| PspFI | CCCAGC | 1 cut(s) | 232 |
| PspGI | CCWGG | 1 cut(s) | 2047 |
| PspN4I | GGNNCC | 2 cut(s) | 964, 1290 |
| PspPI | GGNCC | 6 cut(s) | 4, 608, 683, 1021, 1824, 2197 |
| PspPPI | RGGWCCY | 1 cut(s) | 1824 |
| PstI | CTGCAG | 1 cut(s) | 508 |
| PstNI | CAGNNNCTG | 1 cut(s) | 695 |
| PsuI | RGATCY | 4 cut(s) | 110, 298, 1102, 1903 |
| PvuII | CAGCTG | 2 cut(s) | 232, 509 |
| RsaI | GTAC | 6 cut(s) | 34, 329, 1088, 1457, 1707, 1946 |
| RsaNI | GTAC | 6 cut(s) | 33, 328, 1087, 1456, 1706, 1945 |
| SaqAI | TTAA | 9 cut(s) | 129, 585, 762, 1107, 1265, 1850, 1934, 1950, 1980 |
| Sau96I | GGNCC | 6 cut(s) | 4, 608, 683, 1021, 1824, 2197 |
| ScaI | AGTACT | 1 cut(s) | 1707 |
| SchI | GAGTC | 3 cut(s) | 701, 981, 1163 |
| ScrFI | CCNGG | 1 cut(s) | 2049 |
| SduI | GDGCHC | 2 cut(s) | 1507, 1691 |
| SfaNI | GCATC | 4 cut(s) | 273, 2196, 2231, 2372 |
| SfcI | CTRYAG | 1 cut(s) | 504 |
| SinI | GGWCC | 5 cut(s) | 4, 608, 683, 1021, 1824 |
| SmlI | CTYRAG | 3 cut(s) | 273, 1217, 1849 |
| SmoI | CTYRAG | 3 cut(s) | 273, 1217, 1849 |
| Sse9I | AATT | 6 cut(s) | 22, 724, 1333, 1963, 2019, 2416 |
| SseBI | AGGCCT | 2 cut(s) | 1483, 2344 |
| SsiI | CCGC | 2 cut(s) | 101, 2277 |
| SspI | AATATT | 1 cut(s) | 2036 |
| SspMI | CTAG | 9 cut(s) | 36, 1187, 1584, 1698, 1709, 2001, 2040, 2226, 2253 |
| StuI | AGGCCT | 2 cut(s) | 1483, 2344 |
| StyD4I | CCNGG | 1 cut(s) | 2047 |
| StyI | CCWWGG | 1 cut(s) | 7 |
| TaaI | ACNGT | 2 cut(s) | 365, 1036 |
| TaiI | ACGT | 2 cut(s) | 1875, 1946 |
| TaqI | TCGA | 5 cut(s) | 107, 911, 928, 1512, 1611 |
| TasI | AATT | 6 cut(s) | 22, 724, 1333, 1963, 2019, 2416 |
| TatI | WGTACW | 2 cut(s) | 1086, 1705 |
| TauI | GCSGC | 1 cut(s) | 2279 |
| TfiI | GAWTC | 3 cut(s) | 104, 866, 1116 |
| Tru1I | TTAA | 9 cut(s) | 129, 585, 762, 1107, 1265, 1850, 1934, 1950, 1980 |
| Tru9I | TTAA | 9 cut(s) | 129, 585, 762, 1107, 1265, 1850, 1934, 1950, 1980 |
| TscAI | CASTG | 1 cut(s) | 1605 |
| TseFI | GTSAC | 2 cut(s) | 1529, 1763 |
| Tsp45I | GTSAC | 2 cut(s) | 1529, 1763 |
| TspRI | CASTG | 1 cut(s) | 1605 |
| Vha464I | CTTAAG | 1 cut(s) | 1849 |
| VpaK11BI | GGWCC | 5 cut(s) | 4, 608, 683, 1021, 1824 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 273 |
| XapI | RAATTY | 2 cut(s) | 724, 1333 |
| XbaI | TCTAGA | 3 cut(s) | 1186, 2039, 2225 |
| XceI | RCATGY | 4 cut(s) | 168, 421, 1609, 1836 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1077 |
| XmiI | GTMKAC | 1 cut(s) | 1213 |
| XspI | CTAG | 9 cut(s) | 36, 1187, 1584, 1698, 1709, 2001, 2040, 2226, 2253 |
| ZrmI | AGTACT | 1 cut(s) | 1707 |