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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 56 |
| AccB1I | GGYRCC | 1 cut(s) | 56 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 12 |
| AccI | GTMKAC | 1 cut(s) | 781 |
| AclWI | GGATC | 7 cut(s) | 32, 411, 432, 881, 968, 981, 1475 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 950, 1101, 1465 |
| AcuI | CTGAAG | 1 cut(s) | 600 |
| AdeI | CACNNNGTG | 2 cut(s) | 75, 689 |
| AfaI | GTAC | 6 cut(s) | 58, 149, 318, 356, 517, 1157 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 12, 335, 466, 1115 |
| AflII | CTTAAG | 1 cut(s) | 785 |
| AflIII | ACRYGT | 1 cut(s) | 43 |
| AjnI | CCWGG | 2 cut(s) | 253, 1315 |
| AluBI | AGCT | 4 cut(s) | 371, 1565, 1577, 1589 |
| AluI | AGCT | 4 cut(s) | 371, 1565, 1577, 1589 |
| Alw21I | GWGCWC | 1 cut(s) | 1406 |
| AlwI | GGATC | 7 cut(s) | 32, 411, 432, 881, 968, 981, 1475 |
| Ama87I | CYCGRG | 1 cut(s) | 1405 |
| AoxI | GGCC | 6 cut(s) | 3, 91, 501, 626, 641, 1554 |
| ApoI | RAATTY | 3 cut(s) | 950, 1101, 1465 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 564, 808, 1145 |
| Asp718I | GGTACC | 1 cut(s) | 56 |
| AspS9I | GGNCC | 6 cut(s) | 227, 502, 626, 641, 761, 1504 |
| AsuHPI | GGTGA | 4 cut(s) | 47, 193, 616, 839 |
| AvaI | CYCGRG | 1 cut(s) | 1405 |
| AvaII | GGWCC | 3 cut(s) | 227, 761, 1504 |
| AxyI | CCTNAGG | 1 cut(s) | 330 |
| BaeGI | GKGCMC | 1 cut(s) | 205 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 973 |
| BanI | GGYRCC | 1 cut(s) | 56 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 796, 828 |
| BauI | CACGAG | 1 cut(s) | 1601 |
| Bbv12I | GWGCWC | 1 cut(s) | 1406 |
| BccI | CCATC | 6 cut(s) | 26, 149, 515, 748, 962, 1028 |
| BciT130I | CCWGG | 2 cut(s) | 255, 1317 |
| BciVI | GTATCC | 3 cut(s) | 209, 243, 1182 |
| BfaI | CTAG | 5 cut(s) | 816, 978, 1059, 1176, 1349 |
| BfmI | CTRYAG | 2 cut(s) | 617, 1558 |
| BfrI | CTTAAG | 1 cut(s) | 785 |
| BfuI | GTATCC | 3 cut(s) | 209, 243, 1182 |
| BlpI | GCTNAGC | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 2 cut(s) | 255, 1317 |
| Bme18I | GGWCC | 3 cut(s) | 227, 761, 1504 |
| BmeT110I | CYCGRG | 1 cut(s) | 1405 |
| BmgT120I | GGNCC | 6 cut(s) | 227, 502, 626, 641, 761, 1504 |
| BmiI | GGNNCC | 4 cut(s) | 58, 975, 1072, 1505 |
| BmrFI | CCNGG | 2 cut(s) | 255, 1317 |
| BmrI | ACTGGG | 2 cut(s) | 208, 633 |
| BmsI | GCATC | 3 cut(s) | 286, 912, 1349 |
| BmuI | ACTGGG | 2 cut(s) | 208, 633 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 367 |
| BpuEI | CTTGAG | 1 cut(s) | 1575 |
| Bsa29I | ATCGAT | 1 cut(s) | 406 |
| BsaAI | YACGTR | 1 cut(s) | 46 |
| BsaBI | GATNNNNATC | 3 cut(s) | 36, 972, 1379 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 216, 246, 811, 841 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 12, 335, 466, 1115 |
| Bse1I | ACTGG | 8 cut(s) | 190, 203, 245, 277, 628, 629, 845, 1109 |
| Bse21I | CCTNAGG | 1 cut(s) | 330 |
| Bse8I | GATNNNNATC | 3 cut(s) | 36, 972, 1379 |
| BseBI | CCWGG | 2 cut(s) | 255, 1317 |
| BseCI | ATCGAT | 1 cut(s) | 406 |
| BseGI | GGATG | 4 cut(s) | 37, 1036, 1099, 1325 |
| BseJI | GATNNNNATC | 3 cut(s) | 36, 972, 1379 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 12, 335, 466, 1115 |
| BseMII | CTCAG | 3 cut(s) | 321, 1017, 1221 |
| BseNI | ACTGG | 8 cut(s) | 190, 203, 245, 277, 628, 629, 845, 1109 |
| BseRI | GAGGAG | 2 cut(s) | 147, 1585 |
| BseSI | GKGCMC | 1 cut(s) | 205 |
| BshFI | GGCC | 6 cut(s) | 5, 93, 503, 628, 643, 1556 |
| BshNI | GGYRCC | 1 cut(s) | 56 |
| BshVI | ATCGAT | 1 cut(s) | 406 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1406 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1405 |
| BslFI | GGGAC | 3 cut(s) | 283, 806, 1051 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 12, 335, 466, 1115 |
| BsmFI | GGGAC | 3 cut(s) | 283, 806, 1051 |
| BsmI | GAATGC | 1 cut(s) | 1516 |
| BsnI | GGCC | 6 cut(s) | 5, 93, 503, 628, 643, 1556 |
| BsoBI | CYCGRG | 1 cut(s) | 1405 |
| Bsp1286I | GDGCHC | 2 cut(s) | 205, 1406 |
| Bsp1407I | TGTACA | 1 cut(s) | 354 |
| Bsp143I | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 367 |
| BspANI | GGCC | 6 cut(s) | 5, 93, 503, 628, 643, 1556 |
| BspCNI | CTCAG | 3 cut(s) | 322, 1018, 1220 |
| BspDI | ATCGAT | 1 cut(s) | 406 |
| BspHI | TCATGA | 1 cut(s) | 1473 |
| BspLI | GGNNCC | 4 cut(s) | 58, 975, 1072, 1505 |
| BspPI | GGATC | 7 cut(s) | 32, 411, 432, 881, 968, 981, 1475 |
| BspT107I | GGYRCC | 1 cut(s) | 56 |
| BspTI | CTTAAG | 1 cut(s) | 785 |
| BsrGI | TGTACA | 1 cut(s) | 354 |
| BsrI | ACTGG | 8 cut(s) | 190, 203, 245, 277, 628, 629, 845, 1109 |
| BssMI | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| BssSI | CACGAG | 1 cut(s) | 1601 |
| Bst2BI | CACGAG | 1 cut(s) | 1601 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 1317 |
| Bst4CI | ACNGT | 6 cut(s) | 73, 305, 321, 863, 1333, 1433 |
| Bst6I | CTCTTC | 6 cut(s) | 555, 594, 670, 764, 794, 1118 |
| BstAFI | CTTAAG | 1 cut(s) | 785 |
| BstAUI | TGTACA | 1 cut(s) | 354 |
| BstBAI | YACGTR | 1 cut(s) | 46 |
| BstDEI | CTNAG | 6 cut(s) | 220, 330, 367, 1026, 1207, 1566 |
| BstF5I | GGATG | 4 cut(s) | 37, 1036, 1099, 1325 |
| BstKTI | GATC | 7 cut(s) | 40, 406, 427, 889, 976, 1377, 1483 |
| BstMBI | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1562 |
| BstNI | CCWGG | 2 cut(s) | 255, 1317 |
| BstNSI | RCATGY | 2 cut(s) | 1168, 1241 |
| BstSCI | CCNGG | 2 cut(s) | 253, 1315 |
| BstSFI | CTRYAG | 2 cut(s) | 617, 1558 |
| BstSLI | GKGCMC | 1 cut(s) | 205 |
| BstX2I | RGATCY | 1 cut(s) | 973 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 512, 1210 |
| BstYI | RGATCY | 1 cut(s) | 973 |
| Bsu15I | ATCGAT | 1 cut(s) | 406 |
| Bsu36I | CCTNAGG | 1 cut(s) | 330 |
| BsuI | GTATCC | 3 cut(s) | 209, 243, 1182 |
| BsuRI | GGCC | 6 cut(s) | 5, 93, 503, 628, 643, 1556 |
| BsuTUI | ATCGAT | 1 cut(s) | 406 |
| BtsCI | GGATG | 4 cut(s) | 37, 1036, 1099, 1325 |
| BtsI | GCAGTG | 3 cut(s) | 829, 877, 1521 |
| BtsIMutI | CAGTG | 8 cut(s) | 69, 829, 852, 868, 877, 1215, 1429, 1521 |
| CciI | TCATGA | 1 cut(s) | 1473 |
| Cfr13I | GGNCC | 6 cut(s) | 227, 502, 626, 641, 761, 1504 |
| ClaI | ATCGAT | 1 cut(s) | 406 |
| Csp6I | GTAC | 6 cut(s) | 57, 148, 317, 355, 516, 1156 |
| CviQI | GTAC | 6 cut(s) | 57, 148, 317, 355, 516, 1156 |
| DdeI | CTNAG | 6 cut(s) | 220, 330, 367, 1026, 1207, 1566 |
| DpnI | GATC | 7 cut(s) | 39, 405, 426, 888, 975, 1376, 1482 |
| DpnII | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| DraIII | CACNNNGTG | 2 cut(s) | 75, 689 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 6 cut(s) | 555, 594, 670, 764, 794, 1118 |
| EarI | CTCTTC | 6 cut(s) | 555, 594, 670, 764, 794, 1118 |
| Eco32I | GATATC | 1 cut(s) | 1547 |
| Eco47I | GGWCC | 3 cut(s) | 227, 761, 1504 |
| Eco57I | CTGAAG | 1 cut(s) | 600 |
| Eco81I | CCTNAGG | 1 cut(s) | 330 |
| Eco88I | CYCGRG | 1 cut(s) | 1405 |
| EcoO109I | RGGNCCY | 1 cut(s) | 227 |
| EcoRII | CCWGG | 2 cut(s) | 253, 1315 |
| EcoRV | GATATC | 1 cut(s) | 1547 |
| EcoT22I | ATGCAT | 2 cut(s) | 1068, 1342 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 779, 811 |
| FaqI | GGGAC | 3 cut(s) | 283, 806, 1051 |
| FauNDI | CATATG | 1 cut(s) | 570 |
| FblI | GTMKAC | 1 cut(s) | 781 |
| FokI | GGATG | 4 cut(s) | 44, 1043, 1106, 1332 |
| FspBI | CTAG | 5 cut(s) | 816, 978, 1059, 1176, 1349 |
| HaeIII | GGCC | 6 cut(s) | 5, 93, 503, 628, 643, 1556 |
| HinfI | GANTC | 3 cut(s) | 575, 878, 1008 |
| HphI | GGTGA | 4 cut(s) | 47, 193, 616, 839 |
| Hpy166II | GTNNAC | 5 cut(s) | 148, 355, 782, 839, 1426 |
| Hpy188I | TCNGA | 9 cut(s) | 547, 580, 883, 1027, 1048, 1078, 1135, 1272, 1374 |
| Hpy188III | TCNNGA | 5 cut(s) | 1219, 1349, 1474, 1507, 1601 |
| Hpy8I | GTNNAC | 5 cut(s) | 148, 355, 782, 839, 1426 |
| Hpy99I | CGWCG | 1 cut(s) | 887 |
| HpyAV | CCTTC | 8 cut(s) | 724, 752, 798, 1135, 1249, 1282, 1413, 1493 |
| HpyCH4III | ACNGT | 6 cut(s) | 73, 305, 321, 863, 1333, 1433 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 150 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1562 |
| HpyF3I | CTNAG | 6 cut(s) | 220, 330, 367, 1026, 1207, 1566 |
| HpySE526I | ACGT | 2 cut(s) | 45, 150 |
| KpnI | GGTACC | 1 cut(s) | 60 |
| Kzo9I | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| LmnI | GCTCC | 2 cut(s) | 819, 1444 |
| LweI | GCATC | 3 cut(s) | 286, 912, 1349 |
| MaeI | CTAG | 5 cut(s) | 816, 978, 1059, 1176, 1349 |
| MaeII | ACGT | 2 cut(s) | 45, 150 |
| MaeIII | GTNAC | 4 cut(s) | 181, 236, 289, 1598 |
| MalI | GATC | 7 cut(s) | 39, 405, 426, 888, 975, 1376, 1482 |
| MboI | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| MfeI | CAATTG | 1 cut(s) | 1486 |
| MflI | RGATCY | 1 cut(s) | 973 |
| MhlI | GDGCHC | 2 cut(s) | 205, 1406 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 4 cut(s) | 381, 447, 906, 1078 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 2 cut(s) | 1068, 1342 |
| MroXI | GAANNNNTTC | 3 cut(s) | 564, 808, 1145 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 117, 344, 786, 926 |
| MslI | CAYNNNNRTG | 4 cut(s) | 48, 966, 1163, 1434 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 1 cut(s) | 785 |
| MspR9I | CCNGG | 2 cut(s) | 255, 1317 |
| MunI | CAATTG | 1 cut(s) | 1486 |
| Mva1269I | GAATGC | 1 cut(s) | 1516 |
| MvaI | CCWGG | 2 cut(s) | 255, 1317 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1562 |
| NdeI | CATATG | 1 cut(s) | 570 |
| NdeII | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 975, 1072, 1505 |
| NmuCI | GTSAC | 3 cut(s) | 181, 289, 1598 |
| NsiI | ATGCAT | 2 cut(s) | 1068, 1342 |
| NspI | RCATGY | 2 cut(s) | 1168, 1241 |
| PaeR7I | CTCGAG | 1 cut(s) | 1405 |
| PagI | TCATGA | 1 cut(s) | 1473 |
| PctI | GAATGC | 1 cut(s) | 1516 |
| PdmI | GAANNNNTTC | 3 cut(s) | 564, 808, 1145 |
| PfeI | GAWTC | 3 cut(s) | 575, 878, 1008 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 12 |
| PfoI | TCCNGGA | 1 cut(s) | 1315 |
| Ppu21I | YACGTR | 1 cut(s) | 46 |
| PpuMI | RGGWCCY | 1 cut(s) | 227 |
| Psp5II | RGGWCCY | 1 cut(s) | 227 |
| Psp6I | CCWGG | 2 cut(s) | 253, 1315 |
| PspGI | CCWGG | 2 cut(s) | 253, 1315 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 975, 1072, 1505 |
| PspPI | GGNCC | 6 cut(s) | 227, 502, 626, 641, 761, 1504 |
| PspPPI | RGGWCCY | 1 cut(s) | 227 |
| PspXI | VCTCGAGB | 1 cut(s) | 1405 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1054, 1086 |
| PsuI | RGATCY | 1 cut(s) | 973 |
| RsaI | GTAC | 6 cut(s) | 58, 149, 318, 356, 517, 1157 |
| RsaNI | GTAC | 6 cut(s) | 57, 148, 317, 355, 516, 1156 |
| RseI | CAYNNNNRTG | 4 cut(s) | 48, 966, 1163, 1434 |
| SaqAI | TTAA | 4 cut(s) | 117, 344, 786, 926 |
| Sau3AI | GATC | 7 cut(s) | 37, 403, 424, 886, 973, 1374, 1480 |
| Sau96I | GGNCC | 6 cut(s) | 227, 502, 626, 641, 761, 1504 |
| ScrFI | CCNGG | 2 cut(s) | 255, 1317 |
| SduI | GDGCHC | 2 cut(s) | 205, 1406 |
| SfaNI | GCATC | 3 cut(s) | 286, 912, 1349 |
| SfcI | CTRYAG | 2 cut(s) | 617, 1558 |
| Sfr274I | CTCGAG | 1 cut(s) | 1405 |
| SinI | GGWCC | 3 cut(s) | 227, 761, 1504 |
| SlaI | CTCGAG | 1 cut(s) | 1405 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 48, 966, 1163, 1434 |
| SmlI | CTYRAG | 3 cut(s) | 785, 1405, 1590 |
| SmoI | CTYRAG | 3 cut(s) | 785, 1405, 1590 |
| SspI | AATATT | 1 cut(s) | 20 |
| SspMI | CTAG | 5 cut(s) | 816, 978, 1059, 1176, 1349 |
| StyD4I | CCNGG | 2 cut(s) | 253, 1315 |
| TaaI | ACNGT | 6 cut(s) | 73, 305, 321, 863, 1333, 1433 |
| TaiI | ACGT | 2 cut(s) | 48, 153 |
| TaqI | TCGA | 3 cut(s) | 406, 987, 1406 |
| TaqII | GACCGA | 1 cut(s) | 431 |
| TatI | WGTACW | 2 cut(s) | 354, 1155 |
| TfiI | GAWTC | 3 cut(s) | 575, 878, 1008 |
| Tru1I | TTAA | 4 cut(s) | 117, 344, 786, 926 |
| Tru9I | TTAA | 4 cut(s) | 117, 344, 786, 926 |
| TscAI | CASTG | 8 cut(s) | 76, 829, 852, 868, 877, 1215, 1436, 1521 |
| TseFI | GTSAC | 3 cut(s) | 181, 289, 1598 |
| Tsp45I | GTSAC | 3 cut(s) | 181, 289, 1598 |
| TspDTI | ATGAA | 9 cut(s) | 313, 338, 432, 557, 731, 1095, 1462, 1490, 1550 |
| TspGWI | ACGGA | 1 cut(s) | 1431 |
| TspRI | CASTG | 8 cut(s) | 76, 829, 852, 868, 877, 1215, 1436, 1521 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 12 |
| Vha464I | CTTAAG | 1 cut(s) | 785 |
| VpaK11BI | GGWCC | 3 cut(s) | 227, 761, 1504 |
| XapI | RAATTY | 3 cut(s) | 950, 1101, 1465 |
| XbaI | TCTAGA | 1 cut(s) | 1348 |
| XceI | RCATGY | 2 cut(s) | 1168, 1241 |
| XhoI | CTCGAG | 1 cut(s) | 1405 |
| XmiI | GTMKAC | 1 cut(s) | 781 |
| XmnI | GAANNNNTTC | 3 cut(s) | 564, 808, 1145 |
| XspI | CTAG | 5 cut(s) | 816, 978, 1059, 1176, 1349 |
| Zsp2I | ATGCAT | 2 cut(s) | 1068, 1342 |